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Inferring transmission fitness advantage of SARSCoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021.
Published in:
Eurosurveillance (15607917), 2022, v. 27, n. 10, p. 1, doi. 10.2807/1560-7917.ES.2022.27.10.2100806
By:
- Caduff, Lea;
- Dreifuss, David;
- Schindler, Tobias;
- Devaux, Alexander J.;
- Ganesanandamoorthy, Pravin;
- Kull, Anina;
- Stachler, Elyse;
- Fernandez-Cassi, Xavier;
- Beerenwinkel, Niko;
- Kohn, Tamar;
- Ort, Christoph;
- Julian, Timothy R.
Publication type:
Article
Portable BLAST-like algorithm library and its implementations for command line, Python, and R.
Published in:
PLoS ONE, 2023, v. 18, n. 11, p. 1, doi. 10.1371/journal.pone.0289693
By:
- Schmid, Steven;
- Jeevannavar, Aditya;
- Julian, Timothy R.;
- Tamminen, Manu
Publication type:
Article
Legionnaires' disease in Switzerland: rationale and study protocol of a prospective national case–control and molecular source attribution study (SwissLEGIO).
Published in:
Infection, 2023, v. 51, n. 5, p. 1467, doi. 10.1007/s15010-023-02014-x
By:
- Fischer, Fabienne B.;
- Bigler, Melina;
- Mäusezahl, Daniel;
- Hattendorf, Jan;
- Egli, Adrian;
- Julian, Timothy R.;
- Rölli, Franziska;
- Gaia, Valeria;
- Wymann, Monica;
- Fridez, Françoise;
- Bertschi, Stefanie;
- The SwissLEGIO Hospital Network;
- Akers, Isabel;
- Albrich, Werner C.;
- Bandeira, Diane;
- Bernasconi, Enos;
- Berthod, Delphine;
- Boesing, Maria;
- Calligaris-Maibach, Romana;
- Clerc, Olivier
Publication type:
Article
Identifying the Sources of Intestinal Colonization With Extended-Spectrum β-Lactamase-Producing Escherichia coli in Healthy Infants in the Community.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.803043
By:
- Amin, Mohammed Badrul;
- Hoque, Kazi Injamamul;
- Roy, Subarna;
- Saha, Sumita Rani;
- Islam, Md. Rayhanul;
- Julian, Timothy R.;
- Islam, Mohammad Aminul
Publication type:
Article
A Pilot Study on Integrating Videography and Environmental Microbial Sampling to Model Fecal Bacterial Exposures in Peri-Urban Tanzania.
Published in:
PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136158
By:
- Julian, Timothy R.;
- Pickering, Amy J.
Publication type:
Article
Drinking Water Chlorination Impact on Fecal Carriage of Extended-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in Bangladeshi Children in a Double-Blind, Cluster-Randomized Controlled Trial.
Published in:
Environmental Health Perspectives, 2022, v. 130, n. 11, p. 117702-1, doi. 10.1289/EHP11359
By:
- Montealegre, Maria Camila;
- Greenwood, Esther E.;
- Teichmann, Lisa;
- Nadimpalli, Maya L.;
- Caduff, Lea;
- Swarthout, Jenna M.;
- Nydegger, Tabea;
- Sultana, Sonia;
- Islam, Mohammad Aminul;
- Lanza, Val F.;
- Luby, Stephen P.;
- Pickering, Amy J.;
- Julian, Timothy R.
Publication type:
Article
Wastewater-Based Estimation of the Effective Reproductive Number of SARS-CoV-2.
Published in:
Environmental Health Perspectives, 2022, v. 130, n. 5, p. 057011-1, doi. 10.1289/EHP10050
By:
- Huisman, Jana S.;
- Scire, Jérémie;
- Caduff, Lea;
- Fernandez-Cassi, Xavier;
- Ganesanandamoorthy, Pravin;
- Kull, Anina;
- Scheidegger, Andreas;
- Stachler, Elyse;
- Boehm, Alexandria B.;
- Hughes, Bridgette;
- Knudson, Alisha;
- Topol, Aaron;
- Wigginton, Krista R.;
- Wolfe, Marlene K.;
- Kohn, Tamar;
- Ort, Christoph;
- Stadler, Tanja;
- Julian, Timothy R.
Publication type:
Article
Digital multiplex ligation assay for highly multiplexed screening of β-lactamase-encoding genes in bacterial isolates.
Published in:
Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-0980-7
By:
- Tamminen, Manu;
- Spaak, Jenny;
- Caduff, Lea;
- Schiff, Hanna;
- Lang, Ramon;
- Schmid, Steven;
- Montealegre, Maria Camila;
- Julian, Timothy R.
Publication type:
Article
Retention of E. coli and water on the skin after liquid contact.
Published in:
PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0238998
By:
- Pitol, Ana K.;
- Kohn, Tamar;
- Julian, Timothy R.
Publication type:
Article
Reusing Treated Wastewater: Consideration of the Safety Aspects Associated with Antibiotic-Resistant Bacteria and Antibiotic Resistance Genes.
Published in:
Water (20734441), 2018, v. 10, n. 3, p. 244, doi. 10.3390/w10030244
By:
- Hong, Pei-Ying;
- Julian, Timothy R.;
- Pype, Marie-Laure;
- Jiang, Sunny C.;
- Nelson, Kara L.;
- Graham, David;
- Pruden, Amy;
- Manaia, Célia M.
Publication type:
Article
Quantifying human-environment interactions using videography in the context of infectious disease transmission.
Published in:
Geospatial Health, 2018, v. 13, n. 1, p. 195, doi. 10.4081/gh.2018.631
By:
- Julian, Timothy R.;
- Bustos, Carla;
- Kwong, Laura H.;
- Badilla, Alejandro D.;
- Lee, Julia;
- Bischel, Heather N.;
- Canales, Robert A.
Publication type:
Article
Using Geographic Information Systems and Spatial Analysis Methods to Assess Household Water Access and Sanitation Coverage in the SHINE Trial.
Published in:
Clinical Infectious Diseases, 2015, v. 61, p. S716, doi. 10.1093/cid/civ847
By:
- Ntozini, Robert;
- Marks, Sara J.;
- Mangwadu, Goldberg;
- Mbuya, Mduduzi N. N.;
- Gerema, Grace;
- Mutasa, Batsirai;
- Julian, Timothy R.;
- Schwab, Kellogg J.;
- Humphrey, Jean H.;
- Zungu, Lindiwe I.
Publication type:
Article
Applications of Quantitative Microbial Risk Assessment to Respiratory Pathogens and Implications for Uptake in Policy: A State-of-the-Science Review.
Published in:
Environmental Health Perspectives, 2024, v. 132, n. 5, p. 056001-1, doi. 10.1289/EHP12695
By:
- Lizhan Tang;
- Rhoads, William J.;
- Eichelberg, Antonia;
- Hamilton, Kerry A.;
- Julian, Timothy R.
Publication type:
Article
Fecal Contamination in Child Play Spaces and on Child Hands Are Associated with Subsequent Adverse Child Developmental Outcomes in Rural Democratic Republic of the Congo: REDUCE Prospective Cohort Study.
Published in:
American Journal of Tropical Medicine & Hygiene, 2022, v. 106, n. 4, p. 1141, doi. 10.4269/ajtmh.21-0706
By:
- George, Christine Marie;
- Birindwa, Alves;
- Beck, Sara;
- Julian, Timothy R.;
- Kuhl, Jennifer;
- Williams, Camille;
- Coglianese, Nicole;
- Thomas, Elizabeth D.;
- Bauler, Sarah;
- François, Ruthly;
- Ng, Angela;
- Presence, Amani Sanvura;
- Claude, Bisimwa Rusanga Jean;
- Tofail, Fahmida;
- Perin, Jamie;
- Mirindi, Patrick;
- Cirhuza, Lucien Bisimwa
Publication type:
Article
Escherichia coli Contamination across Multiple Environmental Compartments (Soil, Hands, Drinking Water, and Handwashing Water) in Urban Harare: Correlations and Risk Factors.
Published in:
American Journal of Tropical Medicine & Hygiene, 2018, v. 98, n. 3, p. 803, doi. 10.4269/ajtmh.17-0521
By:
- Navab-Daneshmand, Tala;
- Friedrich, Max N. D.;
- Gächter, Marja;
- Camila Montealegre, Maria;
- Mlambo, Linn S.;
- Nhiwatiwa, Tamuka;
- Mosler, Hans-Joachim;
- Julian, Timothy R.
Publication type:
Article
Short Report: Fecal Indicator Bacteria Contamination of Fomites and Household Demand for Surface Disinfection Products: A Case Study from Peru.
Published in:
American Journal of Tropical Medicine & Hygiene, 2013, v. 89, n. 5, p. 869, doi. 10.4269/ajtmh.12-0425
By:
- Julian, Timothy R.;
- MacDonald, Luke H.;
- Guo, Yayi;
- Marks, Sara J.;
- Kosek, Margaret;
- Yori, Pablo P.;
- Pinedo, Silvia Rengifo;
- Schwab, Kellogg J.
Publication type:
Article
Bacterial hand contamination among Tanzanian mothers varies temporally and following household activities.
Published in:
Tropical Medicine & International Health, 2011, v. 16, n. 2, p. 233, doi. 10.1111/j.1365-3156.2010.02677.x
By:
- Pickering, Amy J.;
- Julian, Timothy R.;
- Mamuya, Simon;
- Boehm, Alexandria B.;
- Davis, Jennifer
Publication type:
Article
Prider: multiplexed primer design using linearly scaling approximation of set coverage.
Published in:
BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04710-1
By:
- Smolander, Niina;
- Julian, Timothy R.;
- Tamminen, Manu
Publication type:
Article
Silica nanoparticles with encapsulated DNA (SPED) – a novel surrogate tracer for microbial transmission in healthcare.
Published in:
Antimicrobial Resistance & Infection Control, 2020, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13756-020-00813-7
By:
- Scotoni, Manuela;
- Koch, Julian;
- Julian, Timothy R.;
- Clack, Lauren;
- Pitol, Ana K.;
- Wolfensberger, Aline;
- Grass, Robert N.;
- Sax, Hugo
Publication type:
Article
Fecal Colonization With Multidrug-Resistant E. coli Among Healthy Infants in Rural Bangladesh.
Published in:
Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00640
By:
- Islam, Mohammad Aminul;
- Amin, Mohammed Badrul;
- Roy, Subarna;
- Asaduzzaman, Muhammad;
- Islam, Md. Rayhanul;
- Navab-Daneshmand, Tala;
- Mattioli, Mia Catharine;
- Kile, Molly L.;
- Levy, Karen;
- Julian, Timothy R.
Publication type:
Article
A Model of Exposure to Rotavirus from Nondietary Ingestion Iterated by Simulated Intermittent Contacts.
Published in:
Risk Analysis: An International Journal, 2009, v. 29, n. 5, p. 617, doi. 10.1111/j.1539-6924.2008.01193.x
By:
- Julian, Timothy R.;
- Canales, Robert A.;
- Leckie, James O.;
- Boehm, Alexandria B.
Publication type:
Article
Correction: Effects of chronic exposure to arsenic on the fecal carriage of antibiotic-resistant Escherichia coli among people in rural Bangladesh.
Published in:
2023
By:
- Amin, Mohammed Badrul;
- Talukdar, Prabhat Kumar;
- Asaduzzaman, Muhammad;
- Roy, Subarna;
- Flatgard, Brandon M.;
- Islam, Md. Rayhanul;
- Saha, Sumita Rani;
- Sharker, Yushuf;
- Mahmud, Zahid Hayat;
- Navab-Daneshmand, Tala;
- Kile, Molly L.;
- Levy, Karen;
- Julian, Timothy R.;
- Islam, Mohammad Aminul
Publication type:
Correction Notice
Effects of chronic exposure to arsenic on the fecal carriage of antibiotic-resistant Escherichia coli among people in rural Bangladesh.
Published in:
PLoS Pathogens, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.ppat.1010952
By:
- Amin, Mohammed Badrul;
- Talukdar, Prabhat Kumar;
- Asaduzzaman, Muhammad;
- Roy, Subarna;
- Flatgard, Brandon M.;
- Islam, Md. Rayhanul;
- Saha, Sumita Rani;
- Mahmud, Zahid Hayat;
- Navab-Daneshmand, Tala;
- Kile, Molly L.;
- Levy, Karen;
- Julian, Timothy R.;
- Islam, Mohammad Aminul
Publication type:
Article

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