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POSMM: an efficient alignment-free metagenomic profiler that complements alignment-based profiling.
- Published in:
- Environmental Microbiome, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s40793-023-00476-y
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- Article
novel predictor of ACE2-binding ability among betacoronaviruses.
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- Evolution, Medicine & Public Health, 2021, v. 2021, n. 1, p. 360, doi. 10.1093/emph/eoab032
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- Article
Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering.
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- Frontiers in Microbiology, 2016, p. 25, doi. 10.3389/fmicb.2016.01210
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- Article
The evolution of reactive oxygen species metabolism.
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- Journal of Experimental Botany, 2016, v. 67, n. 21, p. 5933, doi. 10.1093/jxb/erw382
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- Article
Identification of Novel Antimicrobial Resistance Genes Using Machine Learning, Homology Modeling, and Molecular Docking.
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- Micromachines, 2022, v. 13, n. 11, p. 2102, doi. 10.3390/microorganisms10112102
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Silicon versus Superbug: Assessing Machine Learning's Role in the Fight against Antimicrobial Resistance.
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- Antibiotics (2079-6382), 2023, v. 12, n. 11, p. 1604, doi. 10.3390/antibiotics12111604
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Molecular signatures in the progression of COVID-19 severity.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-26657-2
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Interpreting genomic data via entropic dissection.
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- Nucleic Acids Research, 2013, v. 41, n. 1, p. e23, doi. 10.1093/nar/gks917
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Towards more robust methods of alien gene detection.
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- Nucleic Acids Research, 2011, v. 39, n. 9, p. e56, doi. 10.1093/nar/gkr059
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- Article
Detection of genomic islands via segmental genome heterogeneity.
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- Nucleic Acids Research, 2009, v. 37, n. 16, p. 5255, doi. 10.1093/nar/gkp576
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- Article
Detecting laterally transferred genes: use of entropic clustering methods and genome position.
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- Nucleic Acids Research, 2007, v. 35, n. 14, p. 4629, doi. 10.1093/nar/gkm204
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- Article
Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory.
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- Briefings in Bioinformatics, 2004, v. 5, n. 2, p. 118, doi. 10.1093/bib/5.2.118
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- Article
Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates.
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- Scientific Reports, 2017, p. 42571, doi. 10.1038/srep42571
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- Article
Expression of a dominant‐negative AtNEET‐H89C protein disrupts iron–sulfur metabolism and iron homeostasis in Arabidopsis.
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- Plant Journal, 2020, v. 101, n. 5, p. 1152, doi. 10.1111/tpj.14581
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- Article
Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light.
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- Plant Journal, 2019, v. 98, n. 1, p. 126, doi. 10.1111/tpj.14205
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- Article
Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants.
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- Plant Journal, 2015, v. 84, n. 4, p. 760, doi. 10.1111/tpj.13039
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- Article
Generalization of Entropy Based Divergence Measures for Symbolic Sequence Analysis.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093532
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- Article
Rapid identification of causative insertions underlying Medicago truncatula Tnt1 mutants defective in symbiotic nitrogen fixation from a forward genetic screen by whole genome sequencing.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2452-5
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- Article
DiseaseNet: a transfer learning approach to noncommunicable disease classification.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05734-5
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- Article
Tissue-specific differences in metabolites and transcripts contribute to the heterogeneity of ricinoleic acid accumulation in Ricinus communis L. (castor) seeds.
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- Metabolomics, 2019, v. 15, n. 1, p. 1, doi. 10.1007/s11306-018-1464-3
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- Article
L-Asparaginase-Induced Reversible Posterior Leukoencephalopathy Syndrome in a Child with Acute Lymphoblastic Leukemia.
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- Pediatric Neurosurgery, 2002, v. 37, n. 4, p. 203, doi. 10.1159/000065395
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- Article
An Analysis of Combined Molecular Weight and Hydrophobicity Similarity between the Amino Acid Sequences of Spike Protein Receptor Binding Domains of Betacoronaviruses and Functionally Similar Sequences from Other Virus Families.
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- Microorganisms, 2024, v. 12, n. 10, p. 2021, doi. 10.3390/microorganisms12102021
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Deciphering Microbial Shifts in the Gut and Lung Microbiomes of COVID-19 Patients.
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- Microorganisms, 2024, v. 12, n. 6, p. 1058, doi. 10.3390/microorganisms12061058
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- Article
Using Machine Learning to Predict Genes Underlying Differentiation of Multipartite and Unipartite Traits in Bacteria.
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- Microorganisms, 2023, v. 11, n. 11, p. 2756, doi. 10.3390/microorganisms11112756
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- Article
Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data.
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- Microorganisms, 2023, v. 11, n. 10, p. 2478, doi. 10.3390/microorganisms11102478
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- Article
Identification of Novel Antimicrobial Resistance Genes Using Machine Learning, Homology Modeling, and Molecular Docking.
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- Microorganisms, 2022, v. 10, n. 11, p. 2102, doi. 10.3390/microorganisms10112102
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- Article
The impact of water deficit and heat stress combination on the molecular response, physiology, and seed production of soybean.
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- Physiologia Plantarum, 2021, v. 172, n. 1, p. 41, doi. 10.1111/ppl.13269
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- Article
The OsTIL1 lipocalin protects cell membranes from reactive oxygen species damage and maintains the 18:3‐containing glycerolipid biosynthesis under cold stress in rice.
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- Plant Journal, 2024, v. 117, n. 1, p. 72, doi. 10.1111/tpj.16470
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- Article
IslandCafe: Compositional Anomaly and Feature Enrichment Assessment for Delineation of Genomic Islands.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3273, doi. 10.1534/g3.119.400562
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- Article
Glucose or Altered Ceramide Biosynthesis Mediate Oxygen Deprivation Sensitivity Through Novel Pathways Revealed by Transcriptome Analysis in Caenorhabditis elegans.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 10, p. 3149, doi. 10.1534/g3.116.031583
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- Article
Use of Artificial Genomes in Assessing Methods for Atypical Gene Detection.
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- PLoS Computational Biology, 2005, v. 1, n. 6, p. 461, doi. 10.1371/journal.pcbi.0010056
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- Article
Analysis of multipartite bacterial genomes using alignment free and alignment-based pipelines.
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- Archives of Microbiology, 2023, v. 205, n. 1, p. 1, doi. 10.1007/s00203-022-03354-2
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- Article
Discovery of mosaic genomic islands in Pseudomonas spp.
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- Archives of Microbiology, 2021, v. 203, n. 5, p. 2735, doi. 10.1007/s00203-021-02253-2
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- Article
Rapid Accumulation of Glutathione During Light Stress in Arabidopsis.
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- Plant & Cell Physiology, 2018, v. 59, n. 9, p. 1817, doi. 10.1093/pcp/pcy101
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- Article
machine learning framework to predict antibiotic resistance traits and yet unknown genes underlying resistance to specific antibiotics in bacterial strains.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab179
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- Article
SSG-LUGIA: Single Sequence based Genome Level Unsupervised Genomic Island Prediction Algorithm.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab116
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Metabolomics technology and bioinformatics for precision medicine.
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- Briefings in Bioinformatics, 2019, v. 20, n. 6, p. 1957, doi. 10.1093/bib/bbx170
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- Article
Using complementary approaches to identify trans-domain nuclear gene transfers in the extremophile Galdieria sulphuraria (Rhodophyta).
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- Journal of Phycology, 2017, v. 53, n. 1, p. 7, doi. 10.1111/jpy.12466
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- Article
Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula.
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- Frontiers in Plant Science, 2016, v. 7, p. 1, doi. 10.3389/fpls.2016.01857
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- Article
Detecting Evolutionary Strata on the Human X Chromosome in the Absence of Gametologous Y-Linked Sequences.
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- Genome Biology & Evolution, 2013, v. 5, n. 10, p. 1863, doi. 10.1093/gbe/evt139
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- Article
The Evolutionary Origin of Xanthomonadales Genomes and the Nature of the Horizontal Gene Transfer Process.
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- Molecular Biology & Evolution, 2006, v. 23, n. 11, p. 2049, doi. 10.1093/molbev/msl075
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- Article
Age-group-targeted testing for COVID-19 as a new prevention strategy.
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- Nonlinear Dynamics, 2020, v. 101, n. 3, p. 1921, doi. 10.1007/s11071-020-05879-x
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- Article
Environmental vibrios represent a source of antagonistic compounds that inhibit pathogenic Vibrio cholerae and Vibrio parahaemolyticus strains.
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- MicrobiologyOpen, 2017, v. 6, n. 5, p. n/a, doi. 10.1002/mbo3.504
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- Article
Phytochrome B regulates reactive oxygen signaling during abiotic and biotic stress in plants.
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- New Phytologist, 2023, v. 237, n. 5, p. 1711, doi. 10.1111/nph.18626
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The impact of multifactorial stress combination on plant growth and survival.
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- New Phytologist, 2021, v. 230, n. 3, p. 1034, doi. 10.1111/nph.17232
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ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress.
- Published in:
- PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0147625
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- Article
Effects of choice of DNA sequence model structure on gene identification accuracy.
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- Bioinformatics, 2004, v. 20, n. 7, p. 993, doi. 10.1093/bioinformatics/bth028
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- Publication type:
- Article
Glucose Induces Sensitivity to Oxygen Deprivation and Modulates Insulin/IGF-1 Signaling and Lipid Biosynthesis in Caenorhabditis elegans.
- Published in:
- Genetics, 2015, v. 200, n. 1, p. 167, doi. 10.1534/genetics.115.174631
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- Article
Analysis of transcribed sequences from young and mature zebrafish thrombocytes.
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- PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0264776
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- Article
MYB30 Orchestrates Systemic Reactive Oxygen Signaling and Plant Acclimation.
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- Plant Physiology, 2020, v. 184, n. 2, p. 666, doi. 10.1104/pp.20.00859
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- Article