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Bio-entity network for analysis of protein-protein interaction networks.
- Published in:
- Asian Journal of Control, 2011, v. 13, n. 5, p. 726, doi. 10.1002/asjc.395
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- Article
A semianalytic method for computing the concentration distribution in enzyme-substrate fast reaction systems.
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- Journal of Computational Chemistry, 1981, v. 2, n. 3, p. 273, doi. 10.1002/jcc.540020309
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- Article
iHyd-PseAAC: Predicting Hydroxyproline and Hydroxylysine in Proteins by Incorporating Dipeptide Position-Specific Propensity into Pseudo Amino Acid Composition.
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- International Journal of Molecular Sciences, 2014, v. 15, n. 5, p. 7594, doi. 10.3390/ijms15057594
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- Article
iNR-Drug: Predicting the Interaction of Drugs with Nuclear Receptors in Cellular Networking.
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- International Journal of Molecular Sciences, 2014, v. 15, n. 3, p. 4915, doi. 10.3390/ijms15034915
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- Article
iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components.
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- International Journal of Molecular Sciences, 2014, v. 15, n. 2, p. 1746, doi. 10.3390/ijms15021746
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- Article
Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences.
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- Nucleic Acids Research, 2015, v. 43, n. W1, p. W65, doi. 10.1093/nar/gkv458
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- Article
iPro54-PseKNC: a sequence-based predictor for identifying sigma-54 promoters in prokaryote with pseudo k-tuple nucleotide composition.
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- Nucleic Acids Research, 2014, v. 42, n. 21, p. 12961, doi. 10.1093/nar/gku1019
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- Article
iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition.
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- Nucleic Acids Research, 2013, v. 41, n. 6, p. e68, doi. 10.1093/nar/gks1450
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- Article
DNAPred_Prot: Identification of DNA-Binding Proteins Using Composition- and Position-Based Features.
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- Applied Bionics & Biomechanics, 2022, p. 1, doi. 10.1155/2022/5483115
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- Article
Some illuminating remarks on molecular genetics and genomics as well as drug development.
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- Molecular Genetics & Genomics, 2020, v. 295, n. 2, p. 261, doi. 10.1007/s00438-019-01634-z
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- Article
repRNA: a web server for generating various feature vectors of RNA sequences.
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- Molecular Genetics & Genomics, 2016, v. 291, n. 1, p. 473, doi. 10.1007/s00438-015-1078-7
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- Article
In-depth comparison of somatic point mutation callers based on different tumor next-generation sequencing depth data.
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- Scientific Reports, 2016, p. 36540, doi. 10.1038/srep36540
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- Article
dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation.
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- Scientific Reports, 2016, p. 32333, doi. 10.1038/srep32333
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- Article
Identification of Real MicroRNA Precursors with a Pseudo Structure Status Composition Approach.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0121501
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- Article
iDNA-Prot|dis: Identifying DNA-Binding Proteins by Incorporating Amino Acid Distance-Pairs and Reduced Alphabet Profile into the General Pseudo Amino Acid Composition.
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- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106691
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- Article
iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition.
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- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105018
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- Article
iGPCR-Drug: A Web Server for Predicting Interaction between GPCRs and Drugs in Cellular Networking.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072234
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- Article
iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition.
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- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055844
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- Article
Predicting Secretory Proteins of Malaria Parasite by Incorporating Sequence Evolution Information into Pseudo Amino Acid Composition via Grey System Model.
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- PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049040
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- Article
iNuc-PhysChem: A Sequence-Based Predictor for Identifying Nucleosomes via Physicochemical Properties.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047843
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- Article
A Comparison of Computational Methods for Identifying Virulence Factors.
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- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042517
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- Article
Prediction of Protein Domain with mRMR Feature Selection and Analysis.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039308
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- Article
Design Novel Dual Agonists for Treating Type-2 Diabetes by Targeting Peroxisome Proliferator-Activated Receptors with Core Hopping Approach.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038546
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- Article
Predicting Anatomical Therapeutic Chemical (ATC) Classification of Drugs by Integrating Chemical-Chemical Interactions and Similarities.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035254
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- Article
Hepatitis C Virus Network Based Classification of Hepatocellular Cirrhosis and Carcinoma.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034460
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- Article
Identification of Colorectal Cancer Related Genes with mRMR and Shortest Path in Protein-Protein Interaction Network.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0033393
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- Article
iNR-PhysChem: A Sequence-Based Predictor for Identifying Nuclear Receptors and Their Subfamilies via Physical-Chemical Property Matrix.
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- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030869
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- Article
Insights into the Mutation-Induced HHH Syndrome from Modeling Human Mitochondrial Ornithine Transporter-1.
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- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0031048
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- Article
Predicting Biological Functions of Compounds Based on Chemical-Chemical Interactions.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0029491
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- Article
Novel Inhibitor Design for Hemagglutinin against H1N1 Influenza Virus by Core Hopping Method.
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- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0028111
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- Article
Classification and Analysis of Regulatory Pathways Using Graph Property, Biochemical and Physicochemical Property, and Functional Property.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0025297
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- Article
iDNA-Prot: Identification of DNA Binding Proteins Using Random Forest with Grey Model.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024756
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- Article
NR-2L: A Two-Level Predictor for Identifying Nuclear Receptor Subfamilies Based on Sequence-Derived Features.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023505
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- Article
Predicting Transcriptional Activity of Multiple Site p53 Mutants Based on Hybrid Properties.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022940
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- Article
Prediction of Body Fluids where Proteins are Secreted into Based on Protein Interaction Network.
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- PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022989
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- Article
Remote Data Retrieval for Bioinformatics Applications: An Agent Migration Approach.
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- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020949
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- Article
A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites.
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- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020592
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- Article
An Allosteric Mechanism Inferred from Molecular Dynamics Simulations on Phospholamban Pentamer in Lipid Membranes.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018587
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- Article
Prediction of Antimicrobial Peptides Based on Sequence Alignment and Feature Selection Methods.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018476
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- Article
Insights from Modeling the 3D Structure of New Delhi Metallo-β-Lactamse and Its Binding Interactions with Antibiotic Drugs.
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- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018414
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- Article
iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0018258
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- Article
Predicting Functions of Proteins in Mouse Based on Weighted Protein-Protein Interaction Network and Protein Hybrid Properties.
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- PLoS ONE, 2011, v. 6, n. 1, p. 1, doi. 10.1371/journal.pone.0014556
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- Article
Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization.
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- PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011335
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Analysis and Prediction of the Metabolic Stability of Proteins Based on Their Sequential Features, Subcellular Locations and Interaction Networks.
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- PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0010972
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- Article
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0.
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- PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0009931
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- Article
Predicting Drug-Target Interaction Networks Based on Functional Groups and Biological Features.
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- PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009603
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- Article
Designing Inhibitors of M2 Proton Channel against H1N1 Swine Influenza Virus.
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- PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0009388
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- Article
Predicting protein quaternary structure by pseudo amino acid composition.
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- Proteins, 2004, v. 55, n. 3, p. 781, doi. 10.1002/prot.20186
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- Article
A novel approach to predict active sites of enzyme molecules.
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- Proteins, 2004, v. 55, n. 1, p. 77, doi. 10.1002/prot.10622
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- Article
Predicting protein quaternary structure by pseudo amino acid composition.
- Published in:
- Proteins, 2003, v. 53, n. 2, p. 282, doi. 10.1002/prot.10500
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- Article