OpenURL Connection Search

Select item for more details and to access through your institution.

Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1225207
By:
- Lindsey, Rebecca L.;
- Gladney, Lori M.;
- Huang, Andrew D.;
- Griswold, Taylor;
- Katz, Lee S.;
- Dinsmore, Blake A.;
- Im, Monica S.;
- Kucerova, Zuzana;
- Smith, Peyton A.;
- Lane, Charlotte;
- Carleton, Heather A.
Publication type:
Article
A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00375
By:
- Katz, Lee S.;
- Griswold, Taylor;
- Williams-Newkirk, Amanda J.;
- Wagner, Darlene;
- Petkau, Aaron;
- Sieffert, Cameron;
- Van Domselaar, Gary;
- Xiangyu Deng;
- Carleton, Heather A.
Publication type:
Article
Reoccurring Escherichia coli O157:H7 Strain Linked to Leafy Greens–Associated Outbreaks, 2016–2019.
Published in:
Emerging Infectious Diseases, 2023, v. 29, n. 9, p. 1895, doi. 10.3201/eid2909.230069
By:
- Chen, Jessica C.;
- Patel, Kane;
- Smith, Peyton A.;
- Vidyaprakash, Eshaw;
- Snyder, Caroline;
- Tagg, Kaitlin A.;
- Webb, Hattie E.;
- Schroeder, Morgan N.;
- Katz, Lee S.;
- Rowe, Lori A.;
- Howard, Dakota;
- Griswold, Taylor;
- Lindsey, Rebecca L.;
- Carleton, Heather A.
Publication type:
Article
Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment -- United States, 2021 and 2022.
Published in:
MMWR: Morbidity & Mortality Weekly Report, 2023, v. 72, n. 9, p. 223, doi. 10.15585/mmwr.mm7209a2
By:
- Haston, Julia C.;
- Miko, Shanna;
- Cope, Jennifer R.;
- McKeel, Haley;
- Walters, Cynney;
- Joseph, Lavin A.;
- Griswold, Taylor;
- Katz, Lee S.;
- Andújar, Ashley A.;
- Tourdot, Laura;
- Rounds, Joshua;
- Vagnone, Paula;
- Medus, Carlota;
- Harris, JoAnn;
- Geist, Robert;
- Neises, Daniel;
- Wiggington, Ashley;
- Smith, Trey;
- Im, Monica S.;
- Wheeler, Courtney
Publication type:
Article
Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data.
Published in:
Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W606, doi. 10.1093/nar/gkp288
By:
- Katz, Lee S.;
- Bolen, Chris R.;
- Harcourt, Brian H.;
- Schmink, Susanna;
- Wang, Xin;
- Kislyuk, Andrey;
- Taylor, Robert T.;
- Mayer, Leonard W.;
- Jordan, I. King
Publication type:
Article
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Published in:
GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac003
By:
- Griffiths, Emma J;
- Timme, Ruth E;
- Mendes, Catarina Inês;
- Page, Andrew J;
- Alikhan, Nabil-Fareed;
- Fornika, Dan;
- Maguire, Finlay;
- Campos, Josefina;
- Park, Daniel;
- Olawoye, Idowu B;
- Oluniyi, Paul E;
- Anderson, Dominique;
- Christoffels, Alan;
- da Silva, Anders Gonçalves;
- Cameron, Rhiannon;
- Dooley, Damion;
- Katz, Lee S;
- Black, Allison;
- Karsch-Mizrachi, Ilene;
- Barrett, Tanya
Publication type:
Article
Neisseria Base: a comparative genomics database for Neisseria meningitidis.
Published in:
Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar035
By:
- Katz, Lee S.;
- Humphrey, Jay C.;
- Conley, Andrew B.;
- Nelakuditi, Viswateja;
- Kislyuk, Andrey O.;
- Agrawal, Sonia;
- Jayaraman, Pushkala;
- Harcourt, Brian H.;
- Olsen-Rasmussen, Melissa A.;
- Frace, Michael;
- Sharma, Nitya V.;
- Mayer, Leonard W.;
- Jordan, I. King
Publication type:
Article
Clinical and Laboratory Findings in Patients With Potential Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reinfection, May–July 2020.
Published in:
Clinical Infectious Diseases, 2021, v. 73, n. 12, p. 2217, doi. 10.1093/cid/ciab148
By:
- Lee, James T;
- Hesse, Elisabeth M;
- Paulin, Heather N;
- Datta, Deblina;
- Katz, Lee S;
- Talwar, Amish;
- Chang, Gregory;
- Galang, Romeo R;
- Harcourt, Jennifer L;
- Tamin, Azaibi;
- Thornburg, Natalie J;
- Wong, Karen K;
- Stevens, Valerie;
- Kim, Kaylee;
- Tong, Suxiang;
- Zhou, Bin;
- Queen, Krista;
- Drobeniuc, Jan;
- Folster, Jennifer M;
- Sexton, D Joseph
Publication type:
Article
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Published in:
Clinical Infectious Diseases, 2016, v. 63, n. 3, p. 380, doi. 10.1093/cid/ciw242
By:
- Jackson, Brendan R.;
- Tarr, Cheryl;
- Strain, Errol;
- Jackson, Kelly A.;
- Conrad, Amanda;
- Carleton, Heather;
- Katz, Lee S.;
- Stroika, Steven;
- Gould, L. Hannah;
- Mody, Rajal K.;
- Silk, Benjamin J.;
- Beal, Jennifer;
- Yi Chen;
- Timme, Ruth;
- Doyle, Matthew;
- Fields, Angela;
- Wise, Matthew;
- Tillman, Glenn;
- Defibaugh-Chavez, Stephanie;
- Kucerova, Zuzana
Publication type:
Article
Environmental Surveillance for Toxigenic Vibrio cholerae in Surface Waters of Haiti.
Published in:
American Journal of Tropical Medicine & Hygiene, 2015, v. 92, n. 1, p. 118, doi. 10.4269/ajtmh.13-0601
By:
- Kahler, Amy M.;
- Haley, Bradd J.;
- Chen, Arlene;
- Mull, Bonnie J.;
- Tarr, Cheryl L.;
- Turnsek, Maryann;
- Katz, Lee S.;
- Humphrys, Michael S.;
- Derado, Gordana;
- Freeman, Nicole;
- Boncy, Jacques;
- Colwell, Rita R.;
- Huq, Anwar;
- Hill, Vincent R.
Publication type:
Article
Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.12446
By:
- Wagner, Darlene D.;
- Carleton, Heather A.;
- Trees, Eija;
- Katz, Lee S.
Publication type:
Article
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Published in:
PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0208735
By:
- Pattabiraman, Vaishnavi;
- Katz, Lee S.;
- Chen, Jessica C.;
- McCullough, Andre E.;
- Trees, Eija
Publication type:
Article
A computational genomics pipeline for prokaryotic sequencing projects.
Published in:
Bioinformatics, 2010, v. 26, n. 15, p. 1819, doi. 10.1093/bioinformatics/btq284
By:
- Kislyuk, Andrey O.;
- Katz, Lee S.;
- Agrawal, Sonia;
- Hagen, Matthew S.;
- Conley, Andrew B.;
- Jayaraman, Pushkala;
- Nelakuditi, Viswateja;
- Humphrey, Jay C.;
- Sammons, Scott A.;
- Govil, Dhwani;
- Mair, Raydel D.;
- Tatti, Kathleen M.;
- Tondella, Maria L.;
- Harcourt, Brian H.;
- Mayer, Leonard W.;
- Jordan, I. King
Publication type:
Article
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Published in:
PLoS Neglected Tropical Diseases, 2022, v. 16, n. 8, p. 1, doi. 10.1371/journal.pntd.0010704
By:
- Ochieng, Caroline;
- Chen, Jessica C.;
- Osita, Mike Powel;
- Katz, Lee S.;
- Griswold, Taylor;
- Omballa, Victor;
- Ng'eno, Eric.;
- Ouma, Alice;
- Wamola, Newton;
- Opiyo, Christine;
- Achieng, Loicer;
- Munywoki, Patrick K.;
- Hendriksen, Rene S.;
- Freeman, Molly;
- Mikoleit, Matthew;
- Juma, Bonventure;
- Bigogo, Godfrey;
- Mintz, Eric;
- Verani, Jennifer R.;
- Hunsperger, Elizabeth
Publication type:
Article

Found: 14