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Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.
Published in:
Nature Biotechnology, 2021, v. 39, n. 2, p. 165, doi. 10.1038/s41587-020-0660-7
By:
- Martino, Cameron;
- Shenhav, Liat;
- Marotz, Clarisse A.;
- Armstrong, George;
- McDonald, Daniel;
- Vázquez-Baeza, Yoshiki;
- Morton, James T.;
- Jiang, Lingjing;
- Dominguez-Bello, Maria Gloria;
- Swafford, Austin D.;
- Halperin, Eran;
- Knight, Rob
Publication type:
Article
Establishing microbial composition measurement standards with reference frames.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10656-5
By:
- Morton, James T.;
- Marotz, Clarisse;
- Washburne, Alex;
- Silverman, Justin;
- Zaramela, Livia S.;
- Edlund, Anna;
- Zengler, Karsten;
- Knight, Rob
Publication type:
Article
Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS.
Published in:
NPJ Biofilms & Microbiomes, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41522-022-00289-w
By:
- Marotz, Clarisse;
- Molinsky, Rebecca;
- Martino, Cameron;
- Bohn, Bruno;
- Roy, Sumith;
- Rosenbaum, Michael;
- Desvarieux, Moïse;
- Yuzefpolskaya, Melana;
- Paster, Bruce J.;
- Jacobs, David R.;
- Colombo, Paolo C.;
- Papapanou, Panos N.;
- Knight, Rob;
- Demmer, Ryan T.
Publication type:
Article
Nitrite Generating and Depleting Capacity of the Oral Microbiome and Cardiometabolic Risk: Results from ORIGINS.
Published in:
2022
By:
- Goh, Charlene E.;
- Bohn, Bruno;
- Marotz, Clarisse;
- Molinsky, Rebecca;
- Roy, Sumith;
- Paster, Bruce J.;
- Ching-Yuan;
- Rosenbaum, Michael;
- Yuzefpolskaya, Melana;
- Colombo, Paolo C.;
- Desvarieux, Moïse;
- Papapanou, Panos N.;
- Jacobs, David R.;
- Knight, Rob;
- Demmer, Ryan T.;
- Chen, Ching-Yuan;
- Jacobs, David R Jr
Publication type:
journal article
Improving saliva shotgun metagenomics by chemical host DNA depletion.
Published in:
Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-018-0426-3
By:
- Marotz, Clarisse A.;
- Sanders, Jon G.;
- Zuniga, Cristal;
- Zaramela, Livia S.;
- Knight, Rob;
- Zengler, Karsten
Publication type:
Article
Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism.
Published in:
Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05336-9
By:
- Zarrinpar, Amir;
- Chaix, Amandine;
- Xu, Zhenjiang Z.;
- Chang, Max W.;
- Marotz, Clarisse A.;
- Saghatelian, Alan;
- Knight, Rob;
- Panda, Satchidananda
Publication type:
Article
Effects of rumen-native microbial feed supplementation on milk yield, composition, and feed effciency in lactating dairy cows.
Published in:
Journal of Animal Science, 2022, v. 100, n. 10, p. 1, doi. 10.1093/jas/skac275
By:
- Valldecabres, Ainhoa;
- Gilmore, Sean P.;
- Embree, Jordan J.;
- Zhelev, Ivan Z.;
- Gaffney, James R.;
- Marotz, Clarisse A.;
- Fan Yang;
- Izzo, Andrew S.;
- Embree, Mallory M.;
- Lago, Alfonso
Publication type:
Article
Linking metabolic phenotypes to pathogenic traits among "Candidatus Liberibacter asiaticus" and its hosts.
Published in:
NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41540-020-00142-w
By:
- Zuñiga, Cristal;
- Peacock, Beth;
- Liang, Bo;
- McCollum, Greg;
- Irigoyen, Sonia C.;
- Tec-Campos, Diego;
- Marotz, Clarisse;
- Weng, Nien-Chen;
- Zepeda, Alejandro;
- Vidalakis, Georgios;
- Mandadi, Kranthi K.;
- Borneman, James;
- Zengler, Karsten
Publication type:
Article
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01083-0
By:
- Marotz, Clarisse;
- Belda-Ferre, Pedro;
- Ali, Farhana;
- Das, Promi;
- Huang, Shi;
- Cantrell, Kalen;
- Jiang, Lingjing;
- Martino, Cameron;
- Diner, Rachel E.;
- Rahman, Gibraan;
- McDonald, Daniel;
- Armstrong, George;
- Kodera, Sho;
- Donato, Sonya;
- Ecklu-Mensah, Gertrude;
- Gottel, Neil;
- Salas Garcia, Mariana C.;
- Chiang, Leslie Y.;
- Salido, Rodolfo A.;
- Shaffer, Justin P.
Publication type:
Article
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-020-00960-4
By:
- Minich, Jeremiah J.;
- Ali, Farhana;
- Marotz, Clarisse;
- Belda-Ferre, Pedro;
- Chiang, Leslie;
- Shaffer, Justin P.;
- Carpenter, Carolina S.;
- McDonald, Daniel;
- Gilbert, Jack;
- Allard, Sarah M.;
- Allen, Eric E.;
- Knight, Rob;
- Sweeney, Daniel A.;
- Swafford, Austin D.
Publication type:
Article
Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-020-00960-4
By:
- Minich, Jeremiah J.;
- Ali, Farhana;
- Marotz, Clarisse;
- Belda-Ferre, Pedro;
- Chiang, Leslie;
- Shaffer, Justin P.;
- Carpenter, Carolina S.;
- McDonald, Daniel;
- Gilbert, Jack;
- Allard, Sarah M.;
- Allen, Eric E.;
- Knight, Rob;
- Sweeney, Daniel A.;
- Swafford, Austin D.
Publication type:
Article

Found: 11