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Eight soybean reference genome resources from varying latitudes and agronomic traits.
Published in:
Scientific Data, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41597-021-00947-2
By:
- Chu, Jeffrey Shih-Chieh;
- Peng, Bo;
- Tang, Kuanqiang;
- Yi, Xingxing;
- Zhou, Huangkai;
- Wang, Huan;
- Li, Guang;
- Leng, Jiantian;
- Chen, Nansheng;
- Feng, Xianzhong
Publication type:
Article
Comparative Genomics and Adaptive Selection of the ATP-Binding-Cassette Gene Family in Caenorhabditis Species.
Published in:
Genetics, 2007, v. 175, n. 3, p. 1407, doi. 10.1534/genetics.106.066720
By:
- Zhongying Zhao;
- Thomas, James H.;
- Nansheng Chen;
- Sheps, Jonathan A.;
- Baillie, David L.
Publication type:
Article
Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 1, p. 53, doi. 10.1093/nar/gkr690
By:
- Chu, Jeffery S. C.;
- Tarailo-Graovac, Maja;
- Di Zhang;
- Wang, Jun;
- Uyar, Bora;
- Tu, Domena;
- Trinh, Joanne;
- Baillie, David L.;
- Nansheng Chen
Publication type:
Article
WormBase: new content and better access.
Published in:
Nucleic Acids Research, 2007, v. 35, p. d506, doi. 10.1093/nar/gkl818
By:
- Bieri, Tamberlyn;
- Blasiar, Darin;
- Ozersky, Philip;
- Antoshechkin, Igor;
- Bastiani, Carol;
- Canaran, Payan;
- Chan, Juancarlos;
- Chen, Nansheng;
- Chen, Wen J.;
- Davis, Paul;
- Fiedler, Tristan J.;
- Girard, Lisa;
- Han, Michael;
- Harris, Todd W.;
- Kishore, Ranjana;
- Lee, Raymond;
- McKay, Sheldon;
- Müller, Hans-Michael;
- Nakamura, Cecilia;
- Petcherski, Andrei
Publication type:
Article
Element geochemical characteristics of the Cretaceous dinosaur eggshell fossils and their implications for palaeoenvironment.
Published in:
Chinese Journal of Geochemistry, 1996, v. 15, n. 2, p. 147, doi. 10.1007/BF02843352
By:
- Weidong, Yang;
- Mingqing, Wu;
- Nansheng, Chen;
- Junya, Nan;
- Hongjun, Tian;
- Arakel, Aro
Publication type:
Article
Geochemical characteristics of Jinwozi gold deposit, Xinjiang.
Published in:
Chinese Journal of Geochemistry, 1991, v. 10, n. 2, p. 99, doi. 10.1007/BF02837710
By:
- Zhengen, Zhang;
- Nansheng, Chen
Publication type:
Article
Lower Cambrian black rock series and associated stratiform deposits in Southern China.
Published in:
Chinese Journal of Geochemistry, 1990, v. 9, n. 3, p. 244, doi. 10.1007/BF02837688
By:
- Nansheng, Chen;
- Xiuzhen, Yang;
- Dehan, Liu;
- Xuejun, Xiao;
- Delian, Fan;
- Lianfang, Wang
Publication type:
Article
Genomics insights into different cellobiose hydrolysis activities in two Trichoderma hamatum strains.
Published in:
Microbial Cell Factories, 2017, v. 16, p. 1, doi. 10.1186/s12934-017-0680-2
By:
- Peng Cheng;
- Bo Liu;
- Yi Su;
- Yao Hu;
- Yahui Hong;
- Xinxin Yi;
- Lei Chen;
- Shengying Su;
- S. C. Chu, Jeffrey;
- Nansheng Chen;
- Xingyao Xiong
Publication type:
Article
Identifying novel genes in C. elegans using SAGE tags.
Published in:
BMC Molecular Biology, 2010, v. 11, p. 96, doi. 10.1186/1471-2199-11-96
By:
- Nesbitt, Matthew J.;
- Moerman, Donald G.;
- Nansheng Chen
Publication type:
Article
Characterization of the octamer, a cis-regulatory element that modulates excretory cell gene-expression in Caenorhabditis elegans.
Published in:
BMC Molecular Biology, 2010, v. 11, p. 19, doi. 10.1186/1471-2199-11-19
By:
- Mah, Allan K.;
- Tu, Domena K.;
- Johnsen, Robert C.;
- Chu, Jeffrey S.;
- Chen, Nansheng;
- Baillie, David L.
Publication type:
Article
Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07999-z
By:
- Liu, Shuya;
- Wang, Yichao;
- Xu, Qing;
- Zhang, Mengjia;
- Chen, Nansheng
Publication type:
Article
Metabolic analyses by metatranscriptomics highlight plasticity in phosphorus acquisition during monospecific and multispecies algal blooms.
Published in:
Hydrobiologia, 2020, v. 847, n. 4, p. 1071, doi. 10.1007/s10750-019-04169-x
By:
- Xu, Xin;
- Yu, Zhiming;
- He, Liyan;
- Cao, Xihua;
- Chen, Nansheng;
- Song, Xiuxian
Publication type:
Article
Chromosome-level genome assembly of the Pacific geoduck Panopea generosa reveals major inter- and intrachromosomal rearrangements and substantial expansion of the copine gene family.
Published in:
GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad105
By:
- Wang, Jing;
- Xu, Qing;
- Chen, Min;
- Chen, Yang;
- Wang, Chunde;
- Chen, Nansheng
Publication type:
Article
A chromosomal-level genome assembly for the insect vector for Chagas disease, Triatoma rubrofasciata.
Published in:
GigaScience, 2019, v. 8, n. 8, p. N.PAG, doi. 10.1093/gigascience/giz089
By:
- Liu, Qin;
- Guo, Yunhai;
- Zhang, Yi;
- Hu, Wei;
- Li, Yuanyuan;
- Zhu, Dan;
- Zhou, Zhengbin;
- Wu, Jiatong;
- Chen, Nansheng;
- Zhou, Xiao-Nong
Publication type:
Article
A draft genome assembly of the Chinese sillago (Sillago sinica), the first reference genome for Sillaginidae fishes.
Published in:
GigaScience, 2018, v. 7, n. 9, p. N.PAG, doi. 10.1093/gigascience/giy108
By:
- Xu, Shengyong;
- Xiao, Shijun;
- Zhu, Shilin;
- Zeng, Xiaofei;
- Luo, Jing;
- Liu, Jiaqi;
- Gao, Tianxiang;
- Chen, Nansheng
Publication type:
Article
Comparative Analysis of Chloroplast Genomes of Seven Chaetoceros Species Revealed Variation Hotspots and Speciation Time.
Published in:
Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.742554
By:
- Xu, Qing;
- Cui, Zongmei;
- Chen, Nansheng
Publication type:
Article
Mos1-Mediated Transgenesis to Probe Consequences of Single Gene Mutations in Variation-Rich Isolates of Caenorhabditis elegans.
Published in:
PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0048762
By:
- Tarailo-Graovac, Maja;
- Chen, Nansheng
Publication type:
Article
Quantitative Trait Locus (QTL) Mapping Reveals a Role for Unstudied Genes in Aspergillus Virulence.
Published in:
PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019325
By:
- Christians, Julian K.;
- Cheema, Manjinder S.;
- Vergara, Ismael A.;
- Watt, Cortney A.;
- Pinto, Linda J.;
- Nansheng Chen;
- Moore, Margo M.
Publication type:
Article
Genome-Wide Comparative Gene Family Classification.
Published in:
PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013409
By:
- Frech, Christian;
- Nansheng Chen
Publication type:
Article
Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks.
Published in:
PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013348
By:
- Colak, Recep;
- Moser, Flavia;
- Shih-Chieh Chu, Jeffrey;
- Schönhuth, Alexander;
- Nansheng Chen;
- Ester, Martin
Publication type:
Article
Comparative Analysis of Bacillariophyceae Chloroplast Genomes Uncovers Extensive Genome Rearrangements Associated with Speciation.
Published in:
International Journal of Environmental Research & Public Health, 2022, v. 19, n. 16, p. 10024, doi. 10.3390/ijerph191610024
By:
- Wang, Yichao;
- Wang, Jing;
- Chen, Yang;
- Liu, Shuya;
- Zhao, Yongfang;
- Chen, Nansheng
Publication type:
Article
Biodiversity and Spatial-Temporal Dynamics of Margalefidinium Species in Jiaozhou Bay, China.
Published in:
International Journal of Environmental Research & Public Health, 2021, v. 18, n. 21, p. 11637, doi. 10.3390/ijerph182111637
By:
- Liu, Shuya;
- Zhang, Mengjia;
- Zhao, Yongfang;
- Chen, Nansheng
Publication type:
Article
Metabarcoding Analysis of Harmful Algal Bloom Species in the Western Pacific Seamount Regions.
Published in:
International Journal of Environmental Research & Public Health, 2021, v. 18, n. 21, p. 11470, doi. 10.3390/ijerph182111470
By:
- Xu, Qing;
- Wang, Chunzhi;
- Xu, Kuidong;
- Chen, Nansheng
Publication type:
Article
Single-molecule real-time transcript sequencing facilitates common wheat genome annotation and grain transcriptome research.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2257-y
By:
- Lingli Dong;
- Hongfang Liu;
- Juncheng Zhang;
- Shuangjuan Yang;
- Guanyi Kong;
- Chu, Jeffrey S. C.;
- Nansheng Chen;
- Daowen Wang
Publication type:
Article
Preliminary conclusions of the Royal Society and Academia Sinica 1985 geotraverse of Tibet.
Published in:
Nature, 1986, v. 323, n. 6088, p. 501, doi. 10.1038/323501a0
By:
- Chengfa, Chang;
- Nansheng, Chen;
- Coward, M. P.;
- Wanming, Deng;
- Dewey, J. F.;
- Gansser, A.;
- Harris, N. B. W.;
- Chengwei, Jin;
- Kidd, W. S. F.;
- Leeder, M. R.;
- Huan, Li;
- Jinlu, Lin;
- Chengjie, Liu;
- Houjun, Mei;
- Molnar, P.;
- Yun, Pan;
- Yusheng, Pan;
- Pearce, J. A.;
- Shackleton, R. M.;
- Smith, A. B.
Publication type:
Article
Chromosome-level genome assembly of marine diatom Skeletonema tropicum.
Published in:
Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03238-8
By:
- Liu, Shuya;
- Chen, Nansheng
Publication type:
Article
Evolutionary dynamics of plastomes in coscinodiscophycean diatoms revealed by comparative genomics.
Published in:
Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1203780
By:
- Feng Liu;
- Yichao Wang;
- Hailong Huang;
- Nansheng Chen
Publication type:
Article
GExplore: a web server for integrated queries of protein domains, gene expression and mutant phenotypes.
Published in:
BMC Genomics, 2009, v. 10, p. 529, doi. 10.1186/1471-2164-10-529
By:
- Hutter, Harald;
- Man-Ping Ng;
- Nansheng Chen
Publication type:
Article
Polymorphic segmental duplication in the nematode Caenorhabditis elegans.
Published in:
BMC Genomics, 2009, v. 10, p. 329, doi. 10.1186/1471-2164-10-329
By:
- Vergara, Ismael A.;
- Mah, Allan K.;
- Huang, Jim C.;
- Tarailo-Graovac, Maja;
- Johnsen, Robert C.;
- Baillie, David L.;
- Nansheng Chen
Publication type:
Article
Genetic Diversity and Geographical Distribution of the Red Tide Species Coscinodiscus granii Revealed Using a High-Resolution Molecular Marker.
Published in:
Microorganisms, 2022, v. 10, n. 10, p. 2028, doi. 10.3390/microorganisms10102028
By:
- Huang, Hailong;
- Xu, Qing;
- Song, Huiyin;
- Chen, Nansheng
Publication type:
Article
Genetic Analysis of a Large-Scale Phaeocystis globosa Bloom Offshore Qingdao, China.
Published in:
Microorganisms, 2022, v. 10, n. 9, p. 1723, doi. 10.3390/microorganisms10091723
By:
- Song, Huiyin;
- Wang, Yiqi;
- Ding, Xiangxiang;
- Chen, Nansheng
Publication type:
Article
Diatom Biodiversity and Speciation Revealed by Comparative Analysis of Mitochondrial Genomes.
Published in:
Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.749982
By:
- Wang, Yichao;
- Liu, Shuya;
- Wang, Jing;
- Yao, Yanxin;
- Chen, Yang;
- Xu, Qing;
- Zhao, Zengxia;
- Chen, Nansheng
Publication type:
Article
Chloroplast Genomes for Five Skeletonema Species: Comparative and Phylogenetic Analysis.
Published in:
Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.774617
By:
- Liu, Shuya;
- Xu, Qing;
- Liu, Kuiyan;
- Zhao, Yongfang;
- Chen, Nansheng
Publication type:
Article
WormBase: better software, richer content.
Published in:
Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d475, doi. 10.1093/nar/gkj061
By:
- Schwarz, Erich M.;
- Antoshechkin, Igor;
- Bastiani, Carol;
- Bieri, Tamberlyn;
- Blasiar, Darin;
- Canaran, Payan;
- Chan, Juancarlos;
- Chen, Nansheng;
- Chen, Wen J.;
- Davis, Paul;
- Fiedler, Tristan J.;
- Girard, Lisa;
- Harris, Todd W.;
- Kenny, Eimear E.;
- Kishore, Ranjana;
- Lawson, Dan;
- Lee, Raymond;
- Müller, Hans-Michael;
- Nakamura, Cecilia;
- Ozersky, Phil
Publication type:
Article
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
Published in:
Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d383
By:
- Chen, Nansheng;
- Harris, Todd W.;
- Antoshechkin, Igor;
- Bastiani, Carol;
- Bieri, Tamberlyn;
- Blasiar, Darin;
- Bradnam, Keith;
- Canaran, Payan;
- Chan, Juancarlos;
- Chen, Chao-Kung;
- Chen, Wen J.;
- Cunningham, Fiona;
- Davis, Paul;
- Kenny, Eimear;
- Kishore, Ranjana;
- Lawson, Daniel;
- Lee, Raymond;
- Muller, Hans-Michael;
- Nakamura, Cecilia;
- Pai, Shraddha
Publication type:
Article
WormBase: a multi‐species resource for nematode biology and genomics.
Published in:
Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d411
By:
- Harris, Todd W.;
- Chen, Nansheng;
- Cunningham, Fiona;
- Tello‐Ruiz, Marcela;
- Antoshechkin, Igor;
- Bastiani, Carol;
- Bieri, Tamberlyn;
- Blasiar, Darin;
- Bradnam, Keith;
- Chan, Juancarlos;
- Chen, Chao‐Kung;
- Chen, Wen J.;
- Davis, Paul;
- Kenny, Eimear;
- Kishore, Ranjana;
- Lawson, Daniel;
- Lee, Raymond;
- Muller, Hans‐Michael;
- Nakamura, Cecilia;
- Ozersky, Philip
Publication type:
Article
Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics.
Published in:
G3: Genes | Genomes | Genetics, 2022, v. 12, n. 4, p. 1, doi. 10.1093/g3journal/jkac017
By:
- Xinxin Yi;
- Jing Liu;
- Shengcai Chen;
- Hao Wu;
- Min Liu;
- Qing Xu;
- Lingshan Lei;
- Seunghee Lee;
- Bao Zhang;
- Kudrna, Dave;
- Wei Fan;
- Wing, Rod A.;
- Xuelu Wang;
- Mengchen Zhang;
- Jianwei Zhang;
- Chunyan Yang;
- Nansheng Chen
Publication type:
Article
Genomic Identification and Functional Characterization of Essential Genes in Caenorhabditis elegans.
Published in:
G3: Genes | Genomes | Genetics, 2018, v. 8, n. 3, p. 981, doi. 10.1534/g3.117.300338
By:
- Zhaozhao Qin;
- Johnsen, Robert;
- Shicheng Yu;
- Shih-Chieh Chu, Jeffrey;
- Baillie, David L.;
- Nansheng Chen
Publication type:
Article
CooVar: Co-occurring variant analyzer.
Published in:
BMC Research Notes, 2012, v. 5, n. 1, p. 615, doi. 10.1186/1756-0500-5-615
By:
- Vergara, Ismael A.;
- Frech, Christian;
- Nansheng Chen
Publication type:
Article
Genome Comparison of Human and Non-Human Malaria Parasites Reveals Species Subset-Specific Genes Potentially Linked to Human Disease.
Published in:
PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002320
By:
- Frech, Christian;
- Nansheng Chen
Publication type:
Article
Differential ecological adaptation of diverse Chaetoceros species revealed by metabarcoding analysis.
Published in:
Environmental DNA, 2023, v. 5, n. 6, p. 1332, doi. 10.1002/edn3.455
By:
- Cui, Zongmei;
- Liu, Shuya;
- Xu, Qing;
- Zhao, Yongfang;
- Chen, Nansheng
Publication type:
Article
Acquisition and evolution of the neurotoxin domoic acid biosynthesis gene cluster in Pseudo-nitzschia species.
Published in:
Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07068-7
By:
- He, Ziyan;
- Xu, Qing;
- Chen, Yang;
- Liu, Shuya;
- Song, Huiyin;
- Wang, Hui;
- Leaw, Chui Pin;
- Chen, Nansheng
Publication type:
Article
Novel insights into chloroplast genome evolution in the green macroalgal genus Ulva (Ulvophyceae, Chlorophyta).
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1126175
By:
- Feng Liu;
- Nansheng Chen;
- Hongshu Wang;
- Jiamin Li;
- Jing Wang;
- Fan Qu
Publication type:
Article
Mutational landscape of intrahepatic cholangiocarcinoma.
Published in:
Nature Communications, 2014, v. 5, n. 12, p. 5696, doi. 10.1038/ncomms6696
By:
- Zou, Shanshan;
- Li, Jiarui;
- Zhou, Huabang;
- Frech, Christian;
- Jiang, Xiaolan;
- Chu, Jeffrey S. C.;
- Zhao, Xinyin;
- Li, Yuqiong;
- Li, Qiaomei;
- Wang, Hui;
- Hu, Jingyi;
- Kong, Guanyi;
- Wu, Mengchao;
- Ding, Chuanfan;
- Chen, Nansheng;
- Hu, Heping
Publication type:
Article
MKS and NPHP modules cooperate to establish basal body/transition zone membrane associations and ciliary gate function during ciliogenesis.
Published in:
Journal of Cell Biology, 2011, v. 192, n. 6, p. 1023, doi. 10.1083/jcb.201012116
By:
- Williams, Corey L.;
- Chunmei Li;
- Kida, Katarzyna;
- Inglis, Peter N.;
- Mohan, Swetha;
- Semenec, Lucie;
- Bialas, Nathan J.;
- Stupay, Rachel M.;
- Nansheng Chen;
- Blacque, Oliver E.;
- Yoder, Bradley K.;
- Leroux, Michel R.
Publication type:
Article
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
Published in:
PLoS Biology, 2003, v. 1, n. 11, p. 1, doi. 10.1371/journal.pbio.0000045
By:
- Stein, Lincoln D;
- Bao, Zhirong;
- Blasiar, Darin;
- Blumenthal, Thomas;
- Brent, Michael R;
- Chen, Nansheng;
- Chinwalla, Asif;
- Clarke, Laura;
- Clee, Chris;
- Coghlan, Avril;
- Coulson, Alan;
- D'Eustachio, Peter;
- Fitch, David H. A;
- Fulton, Lucinda A;
- Fulton, Robert E;
- Griffiths-Jones, Sam;
- Harris, Todd W;
- Hillier, LaDeana W;
- Kamath, Ravi;
- Kuwabara, Patricia E
Publication type:
Article
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics.
Published in:
PLoS Biology, 2003, v. 1, n. 2, p. 166, doi. 10.1371/journal.pbio.0000045
By:
- Stein, Lincoln D.;
- Bao, Zhirong;
- Blasiar, Darin;
- Blumenthal, Thomas;
- Brent, Michael R.;
- Nansheng Chen, Michael R.;
- Chinwalla, Asif;
- Clarke, Laura;
- Clee, Chris;
- Coghlan, Avril;
- Coulson, Alan;
- D'Eustachio, Peter;
- Fitch, David H. A.;
- Fulton, Lucinda A.;
- Fulton, Robert E.;
- Griffiths-Jones, Sam;
- Harris, Todd W.;
- Hillier, LaDeana W.;
- Kamath, Ravi;
- Kuwabara, Patricia E.
Publication type:
Article
Dinoflagellate Tripos species composition and seasonal dynamics in Jiaozhou Bay revealed through 18S rDNA V4-based metabarcoding analysis.
Published in:
Journal of Applied Phycology, 2024, v. 36, n. 4, p. 1939, doi. 10.1007/s10811-024-03239-5
By:
- Huang, Xianliang;
- Liu, Kuiyan;
- Ding, Xiangxiang;
- Liu, Shuya;
- Cui, Zhongmei;
- Zhao, Yongfang;
- Chen, Nansheng
Publication type:
Article
Diversity and distribution characteristics of phytoplankton in typical mariculture bays in northern China.
Published in:
Journal of Applied Phycology, 2024, v. 36, n. 3, p. 1363, doi. 10.1007/s10811-024-03185-2
By:
- Li, Jiamin;
- Liu, Feng;
- Yan, Tian;
- Chen, Nansheng;
- Liu, Liang
Publication type:
Article
Metabarcoding analysis of the composition and spatial–temporal dynamics of Pseudo-nitzschia species in Jiaozhou Bay, China.
Published in:
Journal of Applied Phycology, 2024, v. 36, n. 1, p. 259, doi. 10.1007/s10811-023-03127-4
By:
- He, Ziyan;
- Liu, Shuya;
- Cui, Zongmei;
- Zhao, Yongfang;
- Chen, Nansheng
Publication type:
Article

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