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Successful ATAC-Seq From Snap-Frozen Equine Tissues.
Published in:
Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.641788
By:
- Peng, Sichong;
- Bellone, Rebecca;
- Petersen, Jessica L.;
- Kalbfleisch, Theodore S.;
- Finno, Carrie J.
Publication type:
Article
Transcriptional and Histochemical Signatures of Bone Marrow Mononuclear Cell-Mediated Resolution of Synovitis.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.734322
By:
- Menarim, Bruno C.;
- El-Sheikh Ali, Hossam;
- Loux, Shavahn C.;
- Scoggin, Kirsten E.;
- Kalbfleisch, Theodore S.;
- MacLeod, James N.;
- Dahlgren, Linda A.
Publication type:
Article
Ovine reference materials and assays for prion genetic testing.
Published in:
BMC Veterinary Research, 2010, v. 6, p. 23, doi. 10.1186/1746-6148-6-23
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Kalbfleisch, Theodore S.;
- Freking, Brad A.;
- Smith, Timothy P. L.;
- Clawson, Michael L.;
- Laegreid, William W.
Publication type:
Article
Prevalence of the prion protein gene E211K variant in U.S. cattle.
Published in:
BMC Veterinary Research, 2008, v. 4, p. 1, doi. 10.1186/1746-6148-4-25
By:
- Heaton, Michael P.;
- Keele, John W.;
- Harhay, Gregory P.;
- Richt, Jürgen A.;
- Koohmaraie, Mohammad;
- Wheeler, Tommy L.;
- Shackelford, Steven D.;
- Casas, Eduardo;
- King, D. Andy;
- Sonstegard, Tad S.;
- Van Tassell, Curtis P.;
- Neibergs, Holly L.;
- Chase Jr., Chad C.;
- Kalbfleisch, Theodore S.;
- Smith, Timothy PL;
- Clawson, Michael L.;
- Laegreid, William W.
Publication type:
Article
Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 6, p. 565, doi. 10.1093/jhered/esab039
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
A Reference Genome Assembly of American Bison, Bison bison bison.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 174, doi. 10.1093/jhered/esab003
By:
- Oppenheimer, Jonas;
- Rosen, Benjamin D;
- Heaton, Michael P;
- Ley, Brian L Vander;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- Kuehn, Larry A;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Bickhart, Derek M;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Smith, Timothy P L
Publication type:
Article
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.
Published in:
Journal of Heredity, 2021, v. 112, n. 2, p. 184, doi. 10.1093/jhered/esab002
By:
- Heaton, Michael P;
- Smith, Timothy P L;
- Bickhart, Derek M;
- Ley, Brian L Vander;
- Kuehn, Larry A;
- Oppenheimer, Jonas;
- Shafer, Wade R;
- Schuetze, Fred T;
- Stroud, Brad;
- McClure, Jennifer C;
- Barfield, Jennifer P;
- Blackburn, Harvey D;
- Kalbfleisch, Theodore S;
- Davenport, Kimberly M;
- Kuhn, Kristen L;
- Green, Richard E;
- Shapiro, Beth;
- Rosen, Benjamin D
Publication type:
Article
MC1R and KIT Haplotypes Associate With Pigmentation Phenotypes of North American Yak (Bos grunniens).
Published in:
Journal of Heredity, 2020, v. 111, n. 2, p. 182, doi. 10.1093/jhered/esz070
By:
- Petersen, Jessica L;
- Kalbfleisch, Theodore S;
- Parris, Morgan;
- Tietze, Shauna M;
- Cruickshank, Jenifer
Publication type:
Article
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.
Published in:
GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa029
By:
- Rice, Edward S;
- Koren, Sergey;
- Rhie, Arang;
- Heaton, Michael P;
- Kalbfleisch, Theodore S;
- Hardy, Timothy;
- Hackett, Peter H;
- Bickhart, Derek M;
- Rosen, Benjamin D;
- Ley, Brian Vander;
- Maurer, Nicholas W;
- Green, Richard E;
- Phillippy, Adam M;
- Petersen, Jessica L;
- Smith, Timothy P L
Publication type:
Article
Ruling out BGN variants as simple X‐linked causative mutations for bilateral corneal stromal loss in Friesian horses.
Published in:
Animal Genetics, 2018, v. 49, n. 6, p. 656, doi. 10.1111/age.12726
By:
- Alberi, Coral;
- Hisey, Erin;
- Lassaline, Mary;
- Atilano, Alyssa;
- Kalbfleisch, Theodore;
- Stoppini, Riccardo;
- Hermans, Hanneke;
- Back, Willem;
- Mienaltowski, Michael J.;
- Bellone, Rebecca R.
Publication type:
Article
Annotation of the Protein Coding Regions of the Equine Genome.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0124375
By:
- Hestand, Matthew S.;
- Kalbfleisch, Theodore S.;
- Coleman, Stephen J.;
- Zeng, Zheng;
- Liu, Jinze;
- Orlando, Ludovic;
- MacLeod, James N.
Publication type:
Article
SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094851
By:
- Heaton, Michael P.;
- Leymaster, Kreg A.;
- Kalbfleisch, Theodore S.;
- Kijas, James W.;
- Clarke, Shannon M.;
- McEwan, John;
- Maddox, Jillian F.;
- Basnayake, Veronica;
- Petrik, Dustin T.;
- Simpson, Barry;
- Smith, Timothy P. L.;
- Chitko-McKown, Carol G.
Publication type:
Article
Genetic Testing for TMEM154 Mutations Associated with Lentivirus Susceptibility in Sheep.
Published in:
PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055490
By:
- Heaton, Michael P.;
- Kalbfleisch, Theodore S.;
- Petrik, Dustin T.;
- Simpson, Barry;
- Kijas, James W.;
- Clawson, Michael L.;
- Chitko-McKown, Carol G.;
- Harhay, Gregory P.;
- Leymaster, Kreg A.
Publication type:
Article
Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies.
Published in:
PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021400
By:
- Florea, Liliana;
- Souvorov, Alexander;
- Kalbfleisch, Theodore S.;
- Salzberg, Steven L.
Publication type:
Article
Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3316-8
By:
- Clawson, Michael L.;
- Murray, Robert W.;
- Sweeney, Michael T.;
- Apley, Michael D.;
- DeDonder, Keith D.;
- Capik, Sarah F.;
- Larson, Robert L.;
- Lubbers, Brian V.;
- White, Brad J.;
- Kalbfleisch, Theodore S.;
- Schuller, Gennie;
- Dickey, Aaron M.;
- Harhay, Gregory P.;
- Heaton, Michael P.;
- Chitko-McKown, Carol G.;
- Brichta-Harhay, Dayna M.;
- Bono, James L.;
- Smith, Timothy P. L.
Publication type:
Article
Comprehensive characterization of an individual's LINE-1 insertion profile using next generation sequencing data.
Published in:
2012
By:
- Kemper, Alexander;
- Hindi, Musa;
- Ramos, Kenneth S.;
- Kalbfleisch, Theodore S.
Publication type:
Abstract
Interaction between smoking history and gene expression levels impacts survival of breast cancer patients.
Published in:
Breast Cancer Research & Treatment, 2015, v. 152, n. 3, p. 545, doi. 10.1007/s10549-015-3507-z
By:
- Andres, Sarah;
- Bickett, Katie;
- Alatoum, Mohammad;
- Kalbfleisch, Theodore;
- Brock, Guy;
- Wittliff, James
Publication type:
Article
Transcriptomic analysis of equine chorioallantois reveals immune networks and molecular mechanisms involved in nocardioform placentitis.
Published in:
Veterinary Research, 2021, v. 52, n. 1, p. 1, doi. 10.1186/s13567-021-00972-4
By:
- El-Sheikh Ali, Hossam;
- Loux, Shavahn C.;
- Kennedy, Laura;
- Scoggin, Kirsten E.;
- Dini, Pouya;
- Fedorka, Carleigh E.;
- Kalbfleisch, Theodore S.;
- Esteller-Vico, Alejandro;
- Horohov, David W.;
- Erol, Erdal;
- Carter, Craig N.;
- Smith, Jackie L.;
- Ball, Barry A.
Publication type:
Article
Characterization of the placental transcriptome through mid to late gestation in the mare.
Published in:
PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224497
By:
- Loux, Shavahn C.;
- Dini, Pouya;
- El-Sheikh Ali, Hossam;
- Kalbfleisch, Theodore;
- Ball, Barry A.
Publication type:
Article
Inflamed synovial fluid induces a homeostatic response in bone marrow mononuclear cells in vitro: Implications for joint therapy.
Published in:
FASEB Journal, 2020, v. 34, n. 3, p. 4430, doi. 10.1096/fj.201902698R
By:
- Menarim, Bruno C.;
- Gillis, Kiersten H.;
- Oliver, Andrea;
- Mason, Caitlin;
- Werre, Stephen R.;
- Luo, Xin;
- Byron, Christopher R.;
- Kalbfleisch, Theodore S.;
- MacLeod, James N.;
- Dahlgren, Linda A.
Publication type:
Article
Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer.
Published in:
Archives of Toxicology, 2021, v. 95, n. 7, p. 2351, doi. 10.1007/s00204-021-03084-2
By:
- Banerjee, Mayukh;
- Ferragut Cardoso, Ana;
- Al-Eryani, Laila;
- Pan, Jianmin;
- Kalbfleisch, Theodore S.;
- Srivastava, Sudhir;
- Rai, Shesh N.;
- States, J. Christopher
Publication type:
Article
Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.
Published in:
2019
By:
- Kalbfleisch, Theodore S.;
- Rice, Edward S.;
- DePriest, Michael S.;
- Walenz, Brian P.;
- Hestand, Matthew S.;
- Vermeesch, Joris R.;
- O'Connell, Brendan L.;
- Fiddes, Ian T.;
- Vershinina, Alisa O.;
- Saremi, Nedda F.;
- Petersen, Jessica L.;
- Finno, Carrie J.;
- Bellone, Rebecca R.;
- McCue, Molly E.;
- Brooks, Samantha A.;
- Bailey, Ernest;
- Orlando, Ludovic;
- Green, Richard E.;
- Miller, Donald C.;
- Antczak, Douglas F.
Publication type:
Correction Notice
Improved reference genome for the domestic horse increases assembly contiguity and composition.
Published in:
Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z
By:
- Kalbfleisch, Theodore S.;
- Rice, Edward S.;
- DePriest, Michael S.;
- Walenz, Brian P.;
- Hestand, Matthew S.;
- Vermeesch, Joris R.;
- O′Connell, Brendan L.;
- Fiddes, Ian T.;
- Vershinina, Alisa O.;
- Saremi, Nedda F.;
- Petersen, Jessica L.;
- Finno, Carrie J.;
- Bellone, Rebecca R.;
- McCue, Molly E.;
- Brooks, Samantha A.;
- Bailey, Ernest;
- Orlando, Ludovic;
- Green, Richard E.;
- Miller, Donald C.;
- Antczak, Douglas F.
Publication type:
Article
Improved reference genome for the domestic horse increases assembly contiguity and composition.
Published in:
Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z
By:
- Kalbfleisch, Theodore S.;
- Rice, Edward S.;
- DePriest, Michael S.;
- Walenz, Brian P.;
- Hestand, Matthew S.;
- Vermeesch, Joris R.;
- O′Connell, Brendan L.;
- Fiddes, Ian T.;
- Vershinina, Alisa O.;
- Saremi, Nedda F.;
- Petersen, Jessica L.;
- Finno, Carrie J.;
- Bellone, Rebecca R.;
- McCue, Molly E.;
- Brooks, Samantha A.;
- Bailey, Ernest;
- Orlando, Ludovic;
- Green, Richard E.;
- Miller, Donald C.;
- Antczak, Douglas F.
Publication type:
Article
Long non-coding RNA ZFAS1 is a major regulator of epithelial-mesenchymal transition through miR-200/ZEB1/E-cadherin, vimentin signaling in colon adenocarcinoma.
Published in:
Cell Death Discovery, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41420-021-00427-x
By:
- O'Brien, Stephen J.;
- Fiechter, Casey;
- Burton, James;
- Hallion, Jacob;
- Paas, Mason;
- Patel, Ankur;
- Patel, Ajay;
- Rochet, Andre;
- Scheurlen, Katharina;
- Gardner, Sarah;
- Eichenberger, Maurice;
- Sarojini, Harshini;
- Srivastava, Sudhir;
- Rai, Shesh;
- Kalbfleisch, Theodore;
- Polk, Hiram C.;
- Galandiuk, Susan
Publication type:
Article
Using whole genome sequence to compare variant callers and breed differences of US sheep.
Published in:
Frontiers in Genetics, 2023, v. 13, p. 1, doi. 10.3389/fgene.2022.1060882
By:
- Stegemiller, Morgan R.;
- Redden, Reid R.;
- Notter, David R.;
- Taylor, Todd;
- Taylor, J. Bret;
- Cockett, Noelle E.;
- Heaton, Michael P.;
- Kalbfleisch, Theodore S.;
- Murdoch, Brenda M.
Publication type:
Article
Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations.
Published in:
PLoS Genetics, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pgen.1002467
By:
- Heaton, Michael P.;
- Clawson, Michael L.;
- Chitko-Mckown, Carol G.;
- Leymaster, Kreg A.;
- Smith, Timothy P. L.;
- Harhay, Gregory P.;
- White, Stephen N.;
- Herrmann-Hoesing, Lynn M.;
- Mousel, Michelle R.;
- Lewis, Gregory S.;
- Kalbfleisch, Theodore S.;
- Keen, James E.;
- Laegreid, William W.
Publication type:
Article
Article Comparison of Poly-A+ Selection and rRNA Depletion in Detection of lncRNA in Two Equine Tissues Using RNA-seq.
Published in:
Non-Coding RNA, 2020, v. 6, n. 3, p. 1, doi. 10.3390/ncrna6030032
By:
- Dahlgren, Anna R.;
- Scott, Erica Y.;
- Mansour, Tamer;
- Hales, Erin N.;
- Ross, Pablo J.;
- Kalbfleisch, Theodore S.;
- MacLeod, James N.;
- Petersen, Jessica L.;
- Bellone, Rebecca R.;
- Finno, Carrie J.
Publication type:
Article
Landscape of Overlapping Gene Expression in The Equine Placenta.
Published in:
Genes, 2019, v. 10, n. 7, p. 503, doi. 10.3390/genes10070503
By:
- Dini, Pouya;
- Norris, Jamie;
- El-Sheikh Ali, Hossam;
- Loux, Shavahn C.;
- Carossino, Mariano;
- Esteller-Vico, Alejandro;
- Bailey, Ernest;
- Kalbfleisch, Theodore;
- Daels, Peter;
- Ball, Barry A.
Publication type:
Article
Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis.
Published in:
PLoS Pathogens, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.ppat.1007950
By:
- Carossino, Mariano;
- Dini, Pouya;
- Kalbfleisch, Theodore S.;
- Loynachan, Alan T.;
- Canisso, Igor F.;
- Cook, R. Frank;
- Timoney, Peter J.;
- Balasuriya, Udeni B. R.
Publication type:
Article
Delineating the Effects of Passaging and Exposure in a Longitudinal Study of Arsenic-Induced Squamous Cell Carcinoma in a HaCaT Cell Line Model.
Published in:
Toxicological Sciences, 2022, v. 185, n. 2, p. 184, doi. 10.1093/toxsci/kfab129
By:
- Banerjee, Mayukh;
- Al-Eryani, Laila;
- Srivastava, Sudhir;
- Rai, Shesh N;
- Pan, Jianmin;
- Kalbfleisch, Theodore S;
- States, J Christopher
Publication type:
Article
Genetic diversity and connectivity of moose (Alces americanus americanus) in eastern North America.
Published in:
Conservation Genetics, 2023, v. 24, n. 2, p. 235, doi. 10.1007/s10592-022-01496-w
By:
- Rosenblatt, Elias;
- Gieder, Katherina;
- Donovan, Therese;
- Murdoch, James;
- Smith, Timothy P.L.;
- Heaton, Michael P.;
- Kalbfleisch, Theodore S.;
- Murdoch, Brenda M.;
- Bhattarai, Suraj;
- Pacht, Emory;
- Verbist, Emma;
- Basnayake, Veronica;
- McKay, Stephanie
Publication type:
Article
Trio-binning of a hinny refines the comparative organization of the horse and donkey X chromosomes and reveals novel species-specific features.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-47583-x
By:
- Jevit, Matthew J.;
- Castaneda, Caitlin;
- Paria, Nandina;
- Das, Pranab J.;
- Miller, Donald;
- Antczak, Douglas F.;
- Kalbfleisch, Theodore S.;
- Davis, Brian W.;
- Raudsepp, Terje
Publication type:
Article

Found: 33

Successful ATAC-Seq From Snap-Frozen Equine Tissues.

Transcriptional and Histochemical Signatures of Bone Marrow Mononuclear Cell-Mediated Resolution of Synovitis.

Ovine reference materials and assays for prion genetic testing.

Prevalence of the prion protein gene E211K variant in U.S. cattle.

Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.

A Reference Genome Assembly of American Bison, Bison bison bison.

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.

MC1R and KIT Haplotypes Associate With Pigmentation Phenotypes of North American Yak (Bos grunniens).

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.

Ruling out BGN variants as simple X‐linked causative mutations for bilateral corneal stromal loss in Friesian horses.

Annotation of the Protein Coding Regions of the Equine Genome.

SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep.

Genetic Testing for <i>TMEM154</i> Mutations Associated with Lentivirus Susceptibility in Sheep.

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies.

Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.

Comprehensive characterization of an individual's LINE-1 insertion profile using next generation sequencing data.

Interaction between smoking history and gene expression levels impacts survival of breast cancer patients.

Transcriptomic analysis of equine chorioallantois reveals immune networks and molecular mechanisms involved in nocardioform placentitis.

Characterization of the placental transcriptome through mid to late gestation in the mare.

Inflamed synovial fluid induces a homeostatic response in bone marrow mononuclear cells in vitro: Implications for joint therapy.

Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer.

Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Long non-coding RNA ZFAS1 is a major regulator of epithelial-mesenchymal transition through miR-200/ZEB1/E-cadherin, vimentin signaling in colon adenocarcinoma.

Using whole genome sequence to compare variant callers and breed differences of US sheep.

Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations.

Article Comparison of Poly-A<sup>+</sup> Selection and rRNA Depletion in Detection of lncRNA in Two Equine Tissues Using RNA-seq.

Landscape of Overlapping Gene Expression in The Equine Placenta.

Equine arteritis virus long-term persistence is orchestrated by CD8<sup>+</sup> T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis.

Delineating the Effects of Passaging and Exposure in a Longitudinal Study of Arsenic-Induced Squamous Cell Carcinoma in a HaCaT Cell Line Model.

Genetic diversity and connectivity of moose (Alces americanus americanus) in eastern North America.

Trio-binning of a hinny refines the comparative organization of the horse and donkey X chromosomes and reveals novel species-specific features.