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Translational Proteomics Analysis of Anthracycline-Induced Cardiotoxicity From Cardiac Microtissues to Human Heart Biopsies.
- Published in:
- Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.695625
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- Article
Tlr4 Deletion Modulates Cytokine and Extracellular Matrix Expression in Chronic Spinal Cord Injury, Leading to Improved Secondary Damage and Functional Recovery.
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- Journal of Neuroscience, 2024, v. 44, n. 6, p. 1, doi. 10.1523/JNEUROSCI.0778-23.2023
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- Article
SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1104-8
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- Article
TGFβ directs gene expression of activated microglia to an anti-inflammatory phenotype strongly focusing on chemokine genes and cell migratory genes.
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- Glia, 2003, v. 44, n. 3, p. 219, doi. 10.1002/glia.10286
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- Article
Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.
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- Nucleic Acids Research, 2018, v. 46, n. 17, p. 8953, doi. 10.1093/nar/gky726
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- Article
New insights into the performance of human whole-exome capture platforms.
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- Nucleic Acids Research, 2015, v. 43, n. 11, p. 1, doi. 10.1093/nar/gkv216
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- Article
Preferred analysis methods for single genomic regions in RNA sequencing revealed by processing the shape of coverage.
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- Nucleic Acids Research, 2012, v. 40, n. 9, p. e63, doi. 10.1093/nar/gkr1249
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- Article
MAGMA: analysis of two-channel microarrays made easy.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W86, doi. 10.1093/nar/gkm302
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- Article
PhosphoPep—a database of protein phosphorylation sites in model organisms.
- Published in:
- Nature Biotechnology, 2008, v. 26, n. 12, p. 1339, doi. 10.1038/nbt1208-1339
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- Article
A high-quality catalog of the Drosophila melanogaster proteome.
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- Nature Biotechnology, 2007, v. 25, n. 5, p. 576, doi. 10.1038/nbt1300
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- Article
An integrated proteomics approach for studying the molecular pathogenesis of Dupuytren's disease.
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- Journal of Pathology, 2009, v. 217, n. 4, p. 524, doi. 10.1002/path.2483
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- Article
Environmental marine pathogen isolation using mesocosm culture of sharpsnout seabream: striking genomic and morphological features of novel Endozoicomonas sp.
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- Scientific Reports, 2015, p. 17609, doi. 10.1038/srep17609
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- Article
The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features.
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- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac028
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- Article
Genome-wide analysis of transcriptional hierarchy and feedback regulation in the flagellar system of Helicobacter pylori.
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- Molecular Microbiology, 2004, v. 52, n. 4, p. 947, doi. 10.1111/j.1365-2958.2004.04006.x
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- Article
Targeted proteomics coming of age - SRM, PRM and DIA performance evaluated from a core facility perspective.
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- Proteomics, 2016, v. 16, n. 15/16, p. 2183, doi. 10.1002/pmic.201500502
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- Publication type:
- Article
PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.
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- Proteomics, 2013, v. 13, n. 15, p. 2251, doi. 10.1002/pmic.201300036
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- Article
Identification and relative quantification of membrane proteins by surface biotinylation and two-dimensional peptide mapping.
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- Proteomics, 2005, v. 5, n. 11, p. 2718, doi. 10.1002/pmic.200401163
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- Article
One step ahead.
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- EMBO Reports, 2019, v. 20, n. 4, p. N.PAG, doi. 10.15252/embr.201948017
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- Article
Institutional core facilities: prerequisite for breakthroughs in the life sciences.
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- EMBO Reports, 2016, v. 17, n. 8, p. 1088, doi. 10.15252/embr.201642857
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- Article
Substrate Architecture and Functionality.
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- PharmaGenomics, 2004, v. 4, p. 32
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- Article
Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-370
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- Article
Spatial Genomics: Mapping Spatial Genetic Landscapes in Tissue Sections through Microscale Integration of Sampling Methodology into Genomic Workflows (Small 23/2021).
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- Small, 2021, v. 17, n. 23, p. 1, doi. 10.1002/smll.202170112
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- Publication type:
- Article
Mapping Spatial Genetic Landscapes in Tissue Sections through Microscale Integration of Sampling Methodology into Genomic Workflows.
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- Small, 2021, v. 17, n. 23, p. 1, doi. 10.1002/smll.202007901
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- Publication type:
- Article
PhosphoPep—a phosphoproteome resource for systems biology research in Drosophila Kc167 cells.
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- Molecular Systems Biology, 2007, v. 3, n. 1, p. 1, doi. 10.1038/msb4100182
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- Article
A preliminary investigation demonstrating the effect of quercetin on the expression of genes related to cell-cycle arrest, apoptosis and xenobiotic metabolism in human CO115 colon-adenocarcinoma cells using DNA microarray.
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- Biotechnology & Applied Biochemistry, 2006, v. 045, n. 1, p. 29
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- Article
Development and experimental validation of a nifH oligonucleotide microarray to study diazotrophic communities in a glacier forefield.
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- Environmental Microbiology, 2009, v. 11, n. 8, p. 2179, doi. 10.1111/j.1462-2920.2009.01945.x
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- Article
iTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections.
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- International Journal of Proteomics, 2013, p. 1, doi. 10.1155/2013/581862
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- Article
The draft genome of Primula veris yields insights into the molecular basis of heterostyly.
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- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0567-z
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- Article
Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity.
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- Genome Biology & Evolution, 2018, v. 10, n. 6, p. 1363, doi. 10.1093/gbe/evy092
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- Article
Host-Associated Genomic Features of the Novel Uncultured Intracellular Pathogen Ca. Ichthyocystis Revealed by Direct Sequencing of Epitheliocysts.
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- Genome Biology & Evolution, 2016, v. 8, n. 6, p. 1672, doi. 10.1093/gbe/evw111
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- Article
Phosphorylated serine and threonine residues promote site-specific fragmentation of singly charged, arginine-containing peptide ions.
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- Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 10, p. 1435, doi. 10.1002/rcm.4019
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- Article
A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing.
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- PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146687
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- Article
A model-based assay design to reproduce in vivo patterns of acute drug-induced toxicity.
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- 2018
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- Publication type:
- Letter
Mining co-regulated gene profiles for the detection of functional associations in gene expression data.
- Published in:
- Bioinformatics, 2007, v. 23, n. 15, p. 1927, doi. 10.1093/bioinformatics/btm276
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- Article
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00249-5
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- Article
Prognostic value of cross-omics screening for kidney clear cell renal cancer survival.
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- Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0170-1
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- Article
Gain and Loss of Multiple Genes During the Evolution of Helicobacter pylori.
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- PLoS Genetics, 2005, v. 1, n. 4, p. 419, doi. 10.1371/journal.pgen.0010043
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- Article
Dependence of Fluorescence Quenching of CY3 Oligonucleotide Conjugates on the Oxidation Potential of the Stacking Base Pair.
- Published in:
- Molecules, 2020, v. 25, n. 22, p. 5369, doi. 10.3390/molecules25225369
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- Article
Gene Expression Profiles of Different Breast Cancer Cells Compared with their Responsiveness to Fermentedn Mistletoe (Viscum album L.) Extracts Iscador from Oak (Quercus), Pine (Pinus), White Fir (Abies) and Apple Tree (Malus) in vitro.
- Published in:
- Drug Research / Arzneimittel-Forschung (Editio Cantor Verlag fur Medizin und Naturwissenschaften), 2006, v. 56, n. 6, p. 483
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- Article
Long fragments achieve lower base quality in Illumina paired-end sequencing.
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- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39076-7
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- Article
Mass Spectrometry in Proteomics: Technologies, Methods, and Research Applications for the Life Sciences.
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- Chimia, 2022, v. 76, n. 1/2, p. 73, doi. 10.2533/chimia.2022.73
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- Article
Single-Molecule Analytics of Reaction Products of Guanine Oxidation in Oligonucleotides.
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- Chimia, 2021, v. 75, n. 3, p. 210, doi. 10.2533/chimia.2021.210
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- Article
Pain-Associated Transcriptome Changes in Synovium of Knee Osteoarthritis Patients.
- Published in:
- Genes, 2018, v. 9, n. 7, p. 338, doi. 10.3390/genes9070338
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- Article
Unraveling the proteomic changes involved in the resistance response of Cajanus platycarpus to herbivory by Helicoverpa armigera.
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- Applied Microbiology & Biotechnology, 2020, v. 104, n. 17, p. 7603, doi. 10.1007/s00253-020-10787-6
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- Article
specL—an R/Bioconductor package to prepare peptide spectrum matches for use in targeted proteomics.
- Published in:
- Bioinformatics, 2015, v. 31, n. 13, p. 2228, doi. 10.1093/bioinformatics/btv105
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- Article
PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays.
- Published in:
- Bioinformatics, 2008, v. 24, n. 16, p. i83, doi. 10.1093/bioinformatics/btn269
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- Article
TGF-β induces the expression of the FLICE-inhibitory protein and inhibits Fas-mediated apoptosis of microglia.
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- European Journal of Immunology, 2000, v. 30, n. 12, p. 3680, doi. 10.1002/1521-4141(200012)30:12<3680::AID-IMMU3680>3.0.CO;2-L
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- Publication type:
- Article
Involvement of the N-methyl-.
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- European Journal of Immunology, 1999, v. 29, n. 10, p. 3053, doi. 10.1002/(SICI)1521-4141(199910)29:10<3053::AID-IMMU3053>3.0.CO;2-I
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- Publication type:
- Article
TNF-α and IFN-γ render microglia sensitive to Fas ligand-induced apoptosis by induction of Fas expression and down-regulation of Bcl-2 and Bcl-xL.
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- European Journal of Immunology, 1998, v. 28, n. 12, p. 4398, doi. 10.1002/(SICI)1521-4141(199812)28:12<4398::AID-IMMU4398>3.0.CO;2-Y
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- Article
Drop drying on surfaces determines chemical reactivity - the specific case of immobilization of oligonucleotides on microarrays.
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- BMC Biophysics, 2013, v. 6, n. 1, p. 1, doi. 10.1186/2046-1682-6-8
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- Article