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Right Ventricle-to-Left Ventricle Diameter Ratio Measurement Seems to Have No Role in Low-Risk Patients with Pulmonary Embolism Treated at Home Triaged by Hestia Criteria.
- Published in:
- 2020
- By:
- Publication type:
- Letter
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-140
- By:
- Publication type:
- Article
Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-132
- By:
- Publication type:
- Article
Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6229, doi. 10.3390/ijms24076229
- By:
- Publication type:
- Article
Uncertain Value of High‐sensitive Troponin T for Selecting Patients With Acute Pulmonary Embolism for Outpatient Treatment by Hestia Criteria.
- Published in:
- Academic Emergency Medicine, 2020, v. 27, n. 10, p. 1043, doi. 10.1111/acem.13943
- By:
- Publication type:
- Article
TransSynW: A single‐cell RNA‐sequencing based web application to guide cell conversion experiments.
- Published in:
- Stem Cells Translational Medicine, 2021, v. 10, n. 2, p. 230, doi. 10.1002/sctm.20-0227
- By:
- Publication type:
- Article
Author Correction: SeesawPred: a web application for predicting cell-fate determinants in cell differentiation.
- Published in:
- 2022
- By:
- Publication type:
- Correction Notice
Identification of large-scale genomic variation in cancer genomes using in silico reference models.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. e5, doi. 10.1093/nar/gkv828
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- Publication type:
- Article
The RNA helicase DDX6 regulates cell-fate specification in neural stem cells via miRNAs.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 5, p. 2638, doi. 10.1093/nar/gkv138
- By:
- Publication type:
- Article
Predicting missing expression values in gene regulatory networks using a discrete logic modeling optimization guided by network stable states.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 1, p. e8, doi. 10.1093/nar/gks785
- By:
- Publication type:
- Article
A 3D system to model human pancreas development and its reference single-cell transcriptome atlas identify signaling pathways required for progenitor expansion.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23295-6
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- Publication type:
- Article
A computer-guided design tool to increase the efficiency of cellular conversions.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21801-4
- By:
- Publication type:
- Article
A general strategy for cellular reprogramming: The importance of transcription factor cross-repression.
- Published in:
- Stem Cells, 2013, v. 31, n. 10, p. 2127, doi. 10.1002/stem.1473
- By:
- Publication type:
- Article
TRIM32 modulates pluripotency entry and exit by directly regulating Oct4 stability.
- Published in:
- Scientific Reports, 2015, p. 13456, doi. 10.1038/srep13456
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- Publication type:
- Article
Discrete Logic Modelling Optimization to Contextualize Prior Knowledge Networks Using PRUNET.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0127216
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- Publication type:
- Article
Stemness of the hybrid Epithelial/Mesenchymal State in Breast Cancer and Its Association with Poor Survival.
- Published in:
- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126522
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- Publication type:
- Article
The HAS-BLED Score Identifies Patients with Acute Venous Thromboembolism at High Risk of Major Bleeding Complications during the First Six Months of Anticoagulant Treatment.
- Published in:
- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122520
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- Publication type:
- Article
Efficacy and Safety of Vitamin K-Antagonists (VKA) for Atrial Fibrillation in Non-Dialysis Dependent Chronic Kidney Disease.
- Published in:
- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0094420
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- Publication type:
- Article
Evolutionary Conservation and Network Structure Characterize Genes of Phenotypic Relevance for Mitosis in Human.
- Published in:
- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036488
- By:
- Publication type:
- Article
A Novel Network Integrating a miRNA-203/SNAI1 Feedback Loop which Regulates Epithelial to Mesenchymal Transition.
- Published in:
- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035440
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- Publication type:
- Article
Small-world network approach to identify key residues in protein-protein interaction.
- Published in:
- Proteins, 2005, v. 58, n. 3, p. 672, doi. 10.1002/prot.20348
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- Publication type:
- Article
Energetic determinants of protein binding specificity: Insights into protein interaction networks.
- Published in:
- Proteomics, 2009, v. 9, n. 7, p. 1744, doi. 10.1002/pmic.200800425
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- Publication type:
- Article
Synapse alterations precede neuronal damage and storage pathology in a human cerebral organoid model of CLN3-juvenile neuronal ceroid lipofuscinosis.
- Published in:
- Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40478-019-0871-7
- By:
- Publication type:
- Article
Integrative and perturbation-based analysis of the transcriptional dynamics of TGFβ/BMP system components in transition from embryonic stem cells to neural progenitors.
- Published in:
- Stem Cells, 2020, v. 38, n. 2, p. 202, doi. 10.1002/stem.3111
- By:
- Publication type:
- Article
Prox1 Is Required for Oligodendrocyte Cell Identity in Adult Neural Stem Cells of the Subventricular Zone.
- Published in:
- Stem Cells, 2016, v. 34, n. 8, p. 2115, doi. 10.1002/stem.2374
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- Publication type:
- Article
FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-149
- By:
- Publication type:
- Article
Computational modelling of stem cell–niche interactions facilitates discovery of strategies to enhance tissue regeneration and counteract ageing.
- Published in:
- FEBS Journal, 2022, v. 289, n. 6, p. 1486, doi. 10.1111/febs.15832
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- Publication type:
- Article
TreeDet: a web server to explore sequence space.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w110, doi. 10.1093/nar/gkl203
- By:
- Publication type:
- Article
Gene regulatory network analysis reveals differences in site-specific cell fate determination in mammalian brain.
- Published in:
- Frontiers in Cellular Neuroscience, 2014, v. 8, p. 1, doi. 10.3389/fncel.2014.00437
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- Publication type:
- Article
PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells.
- Published in:
- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.56
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- Publication type:
- Article
Residues crucial for maintaining short paths in network communication mediate signaling in proteins.
- Published in:
- Molecular Systems Biology, 2006, v. 2, n. 1, p. E1, doi. 10.1038/msb4100063
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- Publication type:
- Article
The Modular Organization of Domain Structures: Insights into ProteinProtein Binding.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 12, p. e239, doi. 10.1371/journal.pcbi.0030239
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- Publication type:
- Article
Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 6, p. e117, doi. 10.1371/journal.pcbi.0030117
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- Publication type:
- Article
Identification of amino acid residues crucial for chemokine receptor dimerization.
- Published in:
- Nature Immunology, 2004, v. 5, n. 2, p. 216, doi. 10.1038/ni1027
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- Publication type:
- Article
Corrigendum to: FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbab018
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- Publication type:
- Article
FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa283
- By:
- Publication type:
- Article
A Catalogus Immune Muris of the mouse immune responses to diverse pathogens.
- Published in:
- Cell Death & Disease, 2021, v. 12, n. 9, p. 1, doi. 10.1038/s41419-021-04075-y
- By:
- Publication type:
- Article
Gene Regulatory Network Inference of Immunoresponsive Gene 1 (IRG1) Identifies Interferon Regulatory Factor 1 (IRF1) as Its Transcriptional Regulator in Mammalian Macrophages.
- Published in:
- PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149050
- By:
- Publication type:
- Article
A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors.
- Published in:
- Bioinformatics, 2005, v. 21, p. ii13, doi. 10.1093/bioinformatics/bti1101
- By:
- Publication type:
- Article
Topology of small-world networks of protein–protein complex structures.
- Published in:
- Bioinformatics, 2005, v. 21, n. 8, p. 1311, doi. 10.1093/bioinformatics/bti167
- By:
- Publication type:
- Article
Transcriptional and Chromatin Accessibility Profiling of Neural Stem Cells Differentiating into Astrocytes Reveal Dynamic Signatures Affected under Inflammatory Conditions.
- Published in:
- Cells (2073-4409), 2023, v. 12, n. 6, p. 948, doi. 10.3390/cells12060948
- By:
- Publication type:
- Article
ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. D1, p. D877, doi. 10.1093/nar/gkac862
- By:
- Publication type:
- Article
integrative method to predict signalling perturbations for cellular transitions.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 12, p. e72, doi. 10.1093/nar/gkz232
- By:
- Publication type:
- Article
A general computational approach to predicting synergistic transcriptional cores that determine cell subpopulation identities.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 7, p. 3333, doi. 10.1093/nar/gkz147
- By:
- Publication type:
- Article
Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05016-8
- By:
- Publication type:
- Article
Ordering Problems in Fermionic Relativistic Quantum Mechanics.
- Published in:
- International Journal of Modern Physics A: Particles & Fields; Gravitation; Cosmology; Nuclear Physics, 1997, v. 12, n. 1, p. 243, doi. 10.1142/S0217751X97000359
- By:
- Publication type:
- Article
SeesawPred: A Web Application for Predicting Cell-fate Determinants in Cell Differentiation.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31688-9
- By:
- Publication type:
- Article
Modeling heterogeneity in the pluripotent state: A promising strategy for improving the efficiency and fidelity of stem cell differentiation.
- Published in:
- BioEssays, 2016, v. 38, n. 8, p. 758, doi. 10.1002/bies.201600103
- By:
- Publication type:
- Article
Residue centrality, functionally important residues, and active site shape: Analysis of enzyme and non-enzyme families.
- Published in:
- Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 9, p. 2120, doi. 10.1110/ps.062249106
- By:
- Publication type:
- Article
SigHotSpotter: scRNA-seq-based computational tool to control cell subpopulation phenotypes for cellular rejuvenation strategies.
- Published in:
- Bioinformatics, 2020, v. 36, n. 6, p. 1963, doi. 10.1093/bioinformatics/btz827
- By:
- Publication type:
- Article