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Inhibition of Urease, a Ni‐Enzyme: The Reactivity of a Key Thiol With Mono‐ and Di‐Substituted Catechols Elucidated by Kinetic, Structural, and Theoretical Studies.
- Published in:
- Angewandte Chemie, 2021, v. 133, n. 11, p. 6094, doi. 10.1002/ange.202014706
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- Publication type:
- Article
Design, Pharmacological Characterization, and Molecular Docking of Minimalist Peptidomimetic Antagonists of α 4 β 1 Integrin.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 11, p. 9588, doi. 10.3390/ijms24119588
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- Publication type:
- Article
Computational Study of Helicase from SARS-CoV-2 in RNA-Free and Engaged Form.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 14721, doi. 10.3390/ijms232314721
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- Article
Definition of the Binding Architecture to a Target Promoter of HP1043, the Essential Master Regulator of Helicobacter pylori.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 15, p. 7848, doi. 10.3390/ijms22157848
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- Publication type:
- Article
Characterization and 1.57 Å resolution structure of the key fire blight phosphatase AmsI from Erwinia amylovora.
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- Acta Crystallographica: Section F, Structural Biology Communications, 2016, v. 72, n. 12, p. 903, doi. 10.1107/S2053230X16018781
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- Publication type:
- Article
FeON-FeOFF: the Helicobacter pylori Fur regulator commutates iron-responsive transcription by discriminative readout of opposed DNA grooves.
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- Nucleic Acids Research, 2014, v. 42, n. 5, p. 3138, doi. 10.1093/nar/gkt1258
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- Publication type:
- Article
Dynamic characterization and substrate binding of cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase—an enzyme used in bioremediation.
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- Journal of Molecular Modeling, 2014, v. 20, n. 12, p. 1, doi. 10.1007/s00894-014-2531-y
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- Publication type:
- Article
Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing.
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- Plant Genome, 2022, v. 15, n. 2, p. 1, doi. 10.1002/tpg2.20187
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- Publication type:
- Article
GOMoDo: A GPCRs Online Modeling and Docking Webserver.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074092
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- Publication type:
- Article
Zn<sup>2+</sup>-linked dimerization of UreG from Helicobacter pylori, a chaperone involved in nickel trafficking and urease activation.
- Published in:
- Proteins, 2009, v. 74, n. 1, p. 222, doi. 10.1002/prot.22205
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- Publication type:
- Article
A model-based proposal for the role of UreF as a GTPase-activating protein in the urease active site biosynthesis.
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- Proteins, 2007, v. 68, n. 3, p. 749, doi. 10.1002/prot.21472
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- Publication type:
- Article
Application of Molecular Dynamics to the Investigation of Metalloproteins Involved in Metal Homeostasis.
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- European Journal of Inorganic Chemistry, 2018, v. 2018, n. 43, p. 4661, doi. 10.1002/ejic.201800602
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- Publication type:
- Article
Biochemical and structural studies on native and recombinant Glycine max UreG: a detailed characterization of a plant urease accessory protein.
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- Plant Molecular Biology, 2012, v. 78, n. 4-5, p. 461, doi. 10.1007/s11103-012-9878-1
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- Publication type:
- Article
Transient Interactions of a Cytosolic Protein with Macromolecular and Vesicular Cosolutes: Unspecific and Specific Effects.
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- ChemBioChem, 2015, v. 16, n. 18, p. 2633, doi. 10.1002/cbic.201500451
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- Publication type:
- Article
Determination and Kinetic Characterization of a New Potential Inhibitor for AmsI Protein Tyrosine Phosphatase from the Apple Pathogen Erwinia amylovora.
- Published in:
- Molecules, 2023, v. 28, n. 23, p. 7774, doi. 10.3390/molecules28237774
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- Publication type:
- Article
PacDOCK: A Web Server for Positional Distance-Based and Interaction-Based Analysis of Docking Results.
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- Molecules, 2022, v. 27, n. 20, p. 6884, doi. 10.3390/molecules27206884
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- Publication type:
- Article
New Insights on Rotenone Resistance of Complex I Induced by the m.11778G>A/ MT-ND4 Mutation Associated with Leber's Hereditary Optic Neuropathy.
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- Molecules, 2022, v. 27, n. 4, p. 1341, doi. 10.3390/molecules27041341
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- Publication type:
- Article
Structural and biochemical characterization of Arabidopsis alcohol dehydrogenases reveals distinct functional properties but similar redox sensitivity.
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- Plant Journal, 2024, v. 118, n. 4, p. 1054, doi. 10.1111/tpj.16651
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- Publication type:
- Article
Pliable natural biocide: Jaburetox is an intrinsically disordered insecticidal and fungicidal polypeptide derived from jack bean urease.
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- FEBS Journal, 2015, v. 282, n. 6, p. 1043, doi. 10.1111/febs.13201
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- Publication type:
- Article
A Solvent‐Exposed Cysteine Forms a Peculiar Ni<sup>II</sup>‐Binding Site in the Metallochaperone CooT from Rhodospirillum rubrum.
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- Chemistry - A European Journal, 2019, v. 25, n. 67, p. 15351, doi. 10.1002/chem.201903492
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- Publication type:
- Article
The structure of the high-affinity nickel-binding site in the Ni,Zn-HypA•UreE<sub>2</sub> complex.
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- Metallomics, 2023, v. 15, n. 3, p. 1, doi. 10.1093/mtomcs/mfad003
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- Publication type:
- Article
Structure, dynamics, and function of SrnR, a transcription factor for nickel-dependent gene expression.
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- Metallomics, 2021, v. 13, n. 12, p. 1, doi. 10.1093/mtomcs/mfab069
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- Publication type:
- Article
Nickel import and export in the human pathogen Helicobacter pylori, perspectives from molecular modelling.
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- Metallomics, 2021, v. 13, n. 12, p. 1, doi. 10.1093/mtomcs/mfab066
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- Publication type:
- Article
Nickel-responsive transcriptional regulators.
- Published in:
- Metallomics, 2015, v. 7, n. 9, p. 1305, doi. 10.1039/c5mt00072f
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- Publication type:
- Article
Inhibition of Urease, a Ni‐Enzyme: The Reactivity of a Key Thiol With Mono‐ and Di‐Substituted Catechols Elucidated by Kinetic, Structural, and Theoretical Studies.
- Published in:
- Angewandte Chemie International Edition, 2021, v. 60, n. 11, p. 6029, doi. 10.1002/anie.202014706
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- Publication type:
- Article
DNMT1 mutations leading to neurodegeneration paradoxically reflect on mitochondrial metabolism.
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- Human Molecular Genetics, 2020, v. 29, n. 11, p. 1864, doi. 10.1093/hmg/ddaa014
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- Publication type:
- Article
New insights into idebenone therapy in relation to NQO1.
- Published in:
- 2024
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- Publication type:
- Abstract
Conformational Equilibria in Monomeric -Synuclein at the Single-Molecule Level.
- Published in:
- PLoS Biology, 2008, v. 6, n. 1, p. e6, doi. 10.1371/journal.pbio.0060006
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- Publication type:
- Article
Relevance of ARID1A Mutations in Endometrial Carcinomas.
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- Diagnostics (2075-4418), 2022, v. 12, n. 3, p. 592, doi. 10.3390/diagnostics12030592
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- Publication type:
- Article
<italic>Pseudomonas pseudoalcaligenes </italic>KF707 grown with biphenyl expresses a cytochrome <italic>caa</italic><sub>3</sub> oxidase that uses cytochrome <italic>c</italic><sub>4</sub> as electron donor.
- Published in:
- FEBS Letters, 2018, v. 592, n. 6, p. 901, doi. 10.1002/1873-3468.13001
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- Publication type:
- Article
Zincbindpredict—Prediction of Zinc Binding Sites in Proteins.
- Published in:
- Molecules, 2021, v. 26, n. 4, p. 966, doi. 10.3390/molecules26040966
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- Publication type:
- Article
Combining Different Docking Engines and Consensus Strategies to Design and Validate Optimized Virtual Screening Protocols for the SARS-CoV-2 3CL Protease.
- Published in:
- Molecules, 2021, v. 26, n. 4, p. 797, doi. 10.3390/molecules26040797
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- Publication type:
- Article
Assessing the Direct Binding of Ark-Like E3 RING Ligases to Ubiquitin and Its Implication on Their Protein Interaction Network.
- Published in:
- Molecules, 2020, v. 25, n. 20, p. 4787, doi. 10.3390/molecules25204787
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- Publication type:
- Article
Bioinformatics of Metalloproteins and Metalloproteomes.
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- Molecules, 2020, v. 25, n. 15, p. 3366, doi. 10.3390/molecules25153366
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- Publication type:
- Article
Targeting the Protein Tunnels of the Urease Accessory Complex: A Theoretical Investigation.
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- Molecules, 2020, v. 25, n. 12, p. 2911, doi. 10.3390/molecules25122911
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- Publication type:
- Article
Polymer-Mediated Delivery of siRNAs to Hepatocellular Carcinoma: Variables Affecting Specificity and Effectiveness.
- Published in:
- Molecules, 2018, v. 23, n. 4, p. 777, doi. 10.3390/molecules23040777
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- Publication type:
- Article
Evolution of Macromolecular Docking Techniques: The Case Study of Nickel and Iron Metabolism in Pathogenic Bacteria.
- Published in:
- Molecules, 2015, v. 20, n. 8, p. 14265, doi. 10.3390/molecules200814265
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- Publication type:
- Article
Polysaccharides for the Delivery of Antitumor Drugs.
- Published in:
- Materials (1996-1944), 2015, v. 8, n. 5, p. 2569, doi. 10.3390/ma8052569
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- Publication type:
- Article
Conformational response to ligand binding of TMPRSS2, a protease involved in SARS‐CoV‐2 infection: Insights through computational modeling.
- Published in:
- Proteins, 2023, v. 91, n. 9, p. 1288, doi. 10.1002/prot.26548
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- Publication type:
- Article
Variants in Human ATP Synthase Mitochondrial Genes: Biochemical Dysfunctions, Associated Diseases, and Therapies.
- Published in:
- International Journal of Molecular Sciences, 2024, v. 25, n. 4, p. 2239, doi. 10.3390/ijms25042239
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- Publication type:
- Article
Correction to: The model structure of the copper-dependent ammonia Monooxygenase.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Correction to: The structure-based reaction mechanism of urease, a nickel dependent enzyme: tale of a long debate.
- Published in:
- 2021
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- Publication type:
- Correction Notice
The model structure of the copper-dependent ammonia monooxygenase.
- Published in:
- Journal of Biological Inorganic Chemistry (JBIC), 2020, v. 25, n. 7, p. 995, doi. 10.1007/s00775-020-01820-0
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- Publication type:
- Article
The structure-based reaction mechanism of urease, a nickel dependent enzyme: tale of a long debate.
- Published in:
- Journal of Biological Inorganic Chemistry (JBIC), 2020, v. 25, n. 6, p. 829, doi. 10.1007/s00775-020-01808-w
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- Publication type:
- Article
Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools.
- Published in:
- Journal of Biological Inorganic Chemistry (JBIC), 2018, v. 23, n. 8, p. 1309, doi. 10.1007/s00775-018-1616-y
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- Publication type:
- Article
On the interaction of Helicobacter pylori NikR, a Ni(II)-responsive transcription factor, with the urease operator: in solution and in silico studies.
- Published in:
- Journal of Biological Inorganic Chemistry (JBIC), 2015, v. 20, n. 6, p. 1021, doi. 10.1007/s00775-015-1284-0
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- Publication type:
- Article
Nickel binding properties of Helicobacter pylori UreF, an accessory protein in the nickel-based activation of urease.
- Published in:
- Journal of Biological Inorganic Chemistry (JBIC), 2014, v. 19, n. 3, p. 319, doi. 10.1007/s00775-013-1068-3
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- Publication type:
- Article
Structure of the UreD-UreF-UreG-UreE complex in Helicobacter pylori: a model study.
- Published in:
- Journal of Biological Inorganic Chemistry (JBIC), 2013, v. 18, n. 5, p. 571, doi. 10.1007/s00775-013-1002-8
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- Publication type:
- Article
Unraveling the Helicobacter pylori UreG zinc binding site using X-ray absorption spectroscopy (XAS) and structural modeling.
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- Journal of Biological Inorganic Chemistry (JBIC), 2012, v. 17, n. 3, p. 353, doi. 10.1007/s00775-011-0857-9
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- Publication type:
- Article
Molecular Modelling of the Ni(II)-Responsive Synechocystis PCC 6803 Transcriptional Regulator InrS in the Metal Bound Form.
- Published in:
- Inorganics, 2019, v. 7, n. 6, p. 76, doi. 10.3390/inorganics7060076
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- Publication type:
- Article