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Specific and Novel microRNAs Are Regulated as Response to Fungal Infection in Human Dendritic Cells.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00270
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- Article
Differential Biphasic Transcriptional Host Response Associated with Coevolution of Hemagglutinin Quasispecies of Influenza A Virus.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01167
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- Article
Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00570
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- Article
Candida albicans infection leads to barrier breakdown and a MAPK/NF-κB mediated stress response in the intestinal epithelial cell line C2BBe1.
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- Cellular Microbiology, 2016, v. 18, n. 7, p. 889, doi. 10.1111/cmi.12566
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- Article
Global epithelial cell transcriptional responses reveal Streptococcus pyogenes Fas regulator activity association with bacterial aggressiveness.
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- Cellular Microbiology, 2005, v. 7, n. 9, p. 1237, doi. 10.1111/j.1462-5822.2005.00548.x
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- Article
Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-124
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- Article
Inference of dynamical gene-regulatory networks based on time-resolved multi-stimuli multi-experiment data applying NetGenerator V2.0.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-1
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- Article
The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-147
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- Article
Regulatory network modelling of iron acquisition by a fungal pathogen in contact with epithelial cells.
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- BMC Systems Biology, 2010, v. 4, p. 148, doi. 10.1186/1752-0509-4-148
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- Article
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis.
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- BMC Systems Biology, 2010, v. 4, p. 116, doi. 10.1186/1752-0509-4-116
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- Article
Similarities in Gene Expression Profiles during In Vitro Aging of Primary Human Embryonic Lung and Foreskin Fibroblasts.
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- BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/731938
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- Article
Defining the transcriptomic landscape of Candida glabrata by RNA-Seq.
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- Nucleic Acids Research, 2015, v. 43, n. 3, p. 1392, doi. 10.1093/nar/gku1357
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- Article
Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus.
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- PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0136932
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- Article
Regulatory Networks Controlling Nitrogen Sensing and Uptake in <i>Candida albicans</i>.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092734
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- Article
Extension of Life Span by Impaired Glucose Metabolism in <i>Caenorhabditis elegans</i> Is Accompanied by Structural Rearrangements of the Transcriptomic Network.
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- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077776
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- Article
Automated Image Analysis of the Host-Pathogen Interaction between Phagocytes and Aspergillus fumigatus.
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- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019591
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- Article
Missing values in gel-based proteomics.
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- Proteomics, 2010, v. 10, n. 6, p. 1202, doi. 10.1002/pmic.200800576
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- Article
Two-dimensional proteome reference maps for the human pathogenic filamentous fungus Aspergillus fumigatus.
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- Proteomics, 2009, v. 9, n. 5, p. 1407, doi. 10.1002/pmic.200800394
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- Article
Computing the various pathways of penicillin synthesis and their molar yields.
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- Biotechnology & Bioengineering, 2016, v. 113, n. 1, p. 173, doi. 10.1002/bit.25694
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- Article
The novel globin protein fungoglobin is involved in low oxygen adaptation of A spergillus fumigatus.
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- Molecular Microbiology, 2014, v. 93, n. 3, p. 539, doi. 10.1111/mmi.12679
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- Article
DeltaMS: a tool to track isotopologues in GC- and LC-MS data.
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- Metabolomics, 2018, v. 14, n. 4, p. 1, doi. 10.1007/s11306-018-1336-x
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- Article
Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation.
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- Arthritis Research & Therapy, 2014, v. 16, n. 2, p. 84, doi. 10.1186/ar4526
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- Article
Novel application of multi-stimuli network inference to synovial fibroblasts of rheumatoid arthritis patients.
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- BMC Medical Genomics, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1755-8794-7-40
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- Article
Batch correction of microarray data substantially improves the identification of genes differentially expressed in Rheumatoid Arthritis and Osteoarthritis.
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- BMC Medical Genomics, 2012, v. 5, n. 1, p. 23, doi. 10.1186/1755-8794-5-23
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- Article
Hormetic effect of rotenone in primary human fibroblasts.
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- Immunity & Ageing, 2015, v. 12, n. 1, p. 1, doi. 10.1186/s12979-015-0038-8
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- Article
Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs.
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- Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.46
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- Article
In Silico Evidence for Gluconeogenesis from Fatty Acids in Humans.
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- PLoS Computational Biology, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.pcbi.1002116
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- Article
Rheumatoid arthritis, a complex multifactorial disease: On the way toward individualized medicine.
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- Medicinal Research Reviews, 2006, v. 26, n. 1, p. 63, doi. 10.1002/med.20045
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- Article
Branched-chain amino acid catabolism is a conserved regulator of physiological ageing.
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- Nature Communications, 2015, v. 6, n. 12, p. 10043, doi. 10.1038/ncomms10043
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- Article
D-Glucosamine supplementation extends life span of nematodes and of ageing mice.
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- Nature Communications, 2014, v. 5, n. 4, p. 3563, doi. 10.1038/ncomms4563
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- Article
DATA- AND KNOWLEDGE-BASED MODELING OF GENE REGULATORY NETWORKS: AN UPDATE.
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- EXCLI Journal, 2015, v. 14, p. 346, doi. 10.17179/excli2015-168
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- Article
Cross-hybridizations - corrupting and enhancing microarray probe designs.
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- Biomedical Engineering / Biomedizinische Technik, 2012, v. 57, n. S1, p. 1, doi. 10.1515/bmt-2012-4226
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- Article
Dietary.
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- Molecular Nutrition & Food Research, 2011, v. 55, n. 3, p. 419, doi. 10.1002/mnfr.201000293
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- Article
4-Hydroxyphenylglycine biosynthesis in Herpetosiphon aurantiacus: a case of gene duplication and catalytic divergence.
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- Archives of Microbiology, 2012, v. 194, n. 6, p. 557, doi. 10.1007/s00203-012-0789-y
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- Article
Verticillium dahliae-Arabidopsis Interaction Causes Changes in Gene Expression Profiles and Jasmonate Levels on Different Time Scales.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00217
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- Article
Inflammation-associated suppression of metabolic gene networks in acute and chronic liver disease.
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- Archives of Toxicology, 2020, v. 94, n. 1, p. 205, doi. 10.1007/s00204-019-02630-3
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- Article
Cadmium, cobalt and lead cause stress response, cell cycle deregulation and increased steroid as well as xenobiotic metabolism in primary normal human bronchial epithelial cells which is coordinated by at least nine transcription factors.
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- Archives of Toxicology, 2008, v. 82, n. 8, p. 513, doi. 10.1007/s00204-008-0331-9
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Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection.
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- Bioinformatics, 2005, v. 21, n. 8, p. 1626, doi. 10.1093/bioinformatics/bti226
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- Article
Increased Expression of RUNX1 in Liver Correlates with NASH Activity Score in Patients with Non-Alcoholic Steatohepatitis (NASH).
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- Cells (2073-4409), 2019, v. 8, n. 10, p. 1277, doi. 10.3390/cells8101277
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Heterogeneous expression of suppressor of cytokine signalling 2 (SOCS-2) in liver tissue.
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- Journal of Anatomy, 2009, v. 215, n. 2, p. 176, doi. 10.1111/j.1469-7580.2009.01085.x
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- Article
Microevolution of Candida albicans in Macrophages Restores Filamentation in a Nonfilamentous Mutant.
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- PLoS Genetics, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pgen.1004824
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How to Predict Molecular Interactions between Species?
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00442
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- Article
Genome-Wide Expression Profiling Reveals S100B as Biomarker for Invasive Aspergillosis.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00320
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Editorial: Computational Systems Biology of Pathogen-Host Interactions.
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- 2016
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- Editorial
A review on computational systems biology of pathogen-host interactions.
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- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00235
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- Article
Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study.
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- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.00171
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- Article
Computational prediction of molecular pathogen-host interactions based on dual transcriptome data.
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- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.00065
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Facing the challenges of multiscale modelling of bacterial and fungal pathogen-host interactions.
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- Briefings in Functional Genomics, 2017, v. 16, n. 2, p. 57, doi. 10.1093/bfgp/elv064
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- Article
Role of sirtuins in lifespan regulation is linked to methylation of nicotinamide.
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- Nature Chemical Biology, 2013, v. 9, n. 11, p. 693, doi. 10.1038/nchembio.1352
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Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression.
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- BMC Genomics, 2012, v. 13, n. 1, p. 519, doi. 10.1186/1471-2164-13-519
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- Article