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- Title
Glycoside hydrolases reveals their differential role in response to drought and salt stress in potato (Solanum tuberosum).
- Authors
Aiana; Chauhan, Hanny; Singh, Kashmir
- Abstract
Glycoside hydrolases (GHs) are important in metabolic processes involving diverse carbohydrate-based substances found inside plant tissues. Potatoes (Solanum tuberosum) are rich in starchy carbohydrates, suggesting the role of GHs in their metabolic pathways. In this study, we examine the GH superfamily in potato where 366 potential GHs were identified using a similarity search method. Genes were subjected to further characterisation to gain insights into their structural composition, functional properties and distribution patterns across tissue types. Several in silico methodologies were also employed to investigate the physicochemical features, conserved motifs, chromosomal mapping, duplication events, syntenic links with tomato (Solanum lycopersicum), subcellular localisations, secondary structures and phylogenetic relationships. Cis -elements in StGHs revealed that the promoters of StGHs contain cis -elements that are responsive to phytohormones that are involved in plant growth and development, and are associated with stress responses. RNA-seq data identified significant changes in expression levels of GH16, GH17 , GH18 , GH19 and GH28 members under stress conditions. Expression patterns of several GHs were confirmed using real time quantitative PCR in response to stress. StGH16.24 expression increased after 3 days of drought stress, whereas StGH16.30 continuously increased under salt stress. Potential interactions between potato miRNAs and StGH revealed 393 and 627 interactions under drought and salt stress, respectively. Our findings offer insights into specific functions of GHs in diverse developmental stages and stress-related challenges in potato and other plants. Glycoside hydrolases (GHs) are involved in plant defence, cell wall metabolism and stress response. A total of 366 GH superfamily genes were identified in potato (Solanum tuberosum). Differential expression analysis indicated the involvement of GHs in various tissues, abiotic stress and biotic stresses, with specific genes showing significant changes in expression levels under drought and salt stress. Real time qPCR analysis revealed that StGH16.24 expression increased significantly after 3 days of drought stress, validating the presence of ABRE, MYB and MYC cis -regulatory elements. This article belongs to the Collection Functional Genomics for Developing Climate Resilient Crops.
- Publication
Functional Plant Biology, 2024, Vol 51, Issue 9, p1
- ISSN
1445-4408
- Publication type
Article
- DOI
10.1071/FP24114