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Sequence-structure-function relationships in the microbial protein universe.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37896-w
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- Publication type:
- Article
Exposure to the Russian Internet Research Agency foreign influence campaign on Twitter in the 2016 US election and its relationship to attitudes and voting behavior.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-022-35576-9
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- Publication type:
- Article
Correction: Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1541-z
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- Publication type:
- Article
Tweeting Beyond Tahrir: Ideological Diversity and Political Intolerance in Egyptian Twitter Networks.
- Published in:
- World Politics, 2021, v. 73, n. 2, p. 243, doi. 10.1017/S0043887120000295
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- Publication type:
- Article
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.51254
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- Publication type:
- Article
Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.08411
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- Publication type:
- Article
Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 8, p. 4315, doi. 10.1093/nar/gkx174
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- Publication type:
- Article
Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 18, p. 8714, doi. 10.1093/nar/gkw568
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- Publication type:
- Article
Robust classification of protein variation using structural modelling and large-scale data integration.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 6, p. 2501, doi. 10.1093/nar/gkw120
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- Publication type:
- Article
Masked graph modeling for molecule generation.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23415-2
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- Publication type:
- Article
Structure-based protein function prediction using graph convolutional networks.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23303-9
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- Publication type:
- Article
Translating microbiome futures.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 11, p. 1037, doi. 10.1038/nbt.4287
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- Publication type:
- Article
FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells.
- Published in:
- Nature Methods, 2014, v. 11, n. 5, p. 559, doi. 10.1038/nmeth.2885
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- Publication type:
- Article
Wisdom of crowds for robust gene network inference.
- Published in:
- Nature Methods, 2012, v. 9, n. 8, p. 796, doi. 10.1038/nmeth.2016
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- Publication type:
- Article
NetTIME: a multitask and base-pair resolution framework for improved transcription factor binding site prediction.
- Published in:
- Bioinformatics, 2022, v. 38, n. 20, p. 4762, doi. 10.1093/bioinformatics/btac569
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- Publication type:
- Article
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0.
- Published in:
- Bioinformatics, 2022, v. 38, n. 9, p. 2519, doi. 10.1093/bioinformatics/btac117
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- Publication type:
- Article
convolutional neural network for common coordinate registration of high-resolution histology images.
- Published in:
- Bioinformatics, 2021, v. 37, n. 22, p. 4216, doi. 10.1093/bioinformatics/btab447
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- Publication type:
- Article
NetQuilt: deep multispecies network-based protein function prediction using homology-informed network similarity.
- Published in:
- Bioinformatics, 2021, v. 37, n. 16, p. 2414, doi. 10.1093/bioinformatics/btab098
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- Publication type:
- Article
Disrupting Hepatocyte Cyp51 from Cholesterol Synthesis Leads to Progressive Liver Injury in the Developing Mouse and Decreases RORC Signalling.
- Published in:
- Scientific Reports, 2017, p. 40775, doi. 10.1038/srep40775
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- Publication type:
- Article
The coat morphogenetic protein SpoVID is necessary for spore encasement in Bacillus subtilis.
- Published in:
- Molecular Microbiology, 2009, v. 74, n. 3, p. 634, doi. 10.1111/j.1365-2958.2009.06886.x
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- Publication type:
- Article
The Critical Periphery in the Growth of Social Protests.
- Published in:
- PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143611
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- Publication type:
- Article
Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design.
- Published in:
- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0067051
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- Publication type:
- Article
Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)
- Published in:
- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063906
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- Publication type:
- Article
Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design.
- Published in:
- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032637
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- Publication type:
- Article
Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction.
- Published in:
- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0023947
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- Publication type:
- Article
The 2010 Rosetta Developers Meeting: Macromolecular Prediction and Design Meets Reproducible Publishing.
- Published in:
- 2011
- By:
- Publication type:
- Proceeding
DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models.
- Published in:
- PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013397
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- Publication type:
- Article
DREAM3: Network Inference Using Dynamic Context Likelihood of Relatedness and the Inferelator.
- Published in:
- PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009803
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- Publication type:
- Article
Diurnally Entrained Anticipatory Behavior in Archaea.
- Published in:
- PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005485
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- Publication type:
- Article
Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability.
- Published in:
- Proteins, 2016, v. 84, n. 1, p. 60, doi. 10.1002/prot.24955
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- Publication type:
- Article
Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27.
- Published in:
- Proteins, 2013, v. 81, n. 12, p. 2201, doi. 10.1002/prot.24425
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- Publication type:
- Article
An improved protein decoy set for testing energy functions for protein structure prediction.
- Published in:
- Proteins, 2003, v. 53, n. 1, p. 76, doi. 10.1002/prot.10454
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- Publication type:
- Article
Automated prediction of CASP-5 structures using the Robetta server.
- Published in:
- Proteins, 2003, v. 53, n. S6, p. 524, doi. 10.1002/prot.10529
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- Publication type:
- Article
Distributions of beta sheets in proteins with application to structure prediction.
- Published in:
- Proteins, 2002, v. 48, n. 1, p. 85, doi. 10.1002/prot.10123
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- Publication type:
- Article
Rosetta in CASP4: Progress in ab initio protein structure prediction.
- Published in:
- Proteins, 2001, v. 45, n. S5, p. 119, doi. 10.1002/prot.1170
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- Publication type:
- Article
Improving the performance of rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.
- Published in:
- Proteins, 2001, v. 43, n. 1, p. 1, doi. 10.1002/1097-0134(20010401)43:1<1::AID-PROT1012>3.0.CO;2-A
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- Publication type:
- Article
Airway Microbiota Is Associated with Upregulation of the PI3K Pathway in Lung Cancer.
- Published in:
- 2018
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- Publication type:
- journal article
Quantitative proteomic analysis of the budding yeast cell cycle using acid-cleavable isotope-coded affinity tag reagents.
- Published in:
- Proteomics, 2006, v. 6, n. 23, p. 6146, doi. 10.1002/pmic.200600159
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- Publication type:
- Article
Computational Design of Phosphotriesterase Improves V‐Agent Degradation Efficiency.
- Published in:
- ChemistryOpen, 2024, v. 13, n. 7, p. 1, doi. 10.1002/open.202300263
- By:
- Publication type:
- Article
SlrA/SinR/SlrR inhibits motility gene expression upstream of a hypersensitive and hysteretic switch at the level of σ<sup>D</sup> in Bacillus subtilis.
- Published in:
- Molecular Microbiology, 2012, v. 83, n. 6, p. 1210, doi. 10.1111/j.1365-2958.2012.08003.x
- By:
- Publication type:
- Article
NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12811-4
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- Publication type:
- Article
Design of Peptoid-peptide Macrocycles to Inhibit the β-catenin TCF Interaction in Prostate Cancer.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06845-3
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- Publication type:
- Article
Viewing the US presidential electoral map through the lens of public health.
- Published in:
- PLoS ONE, 2021, v. 16, n. 7, p. 1, doi. 10.1371/journal.pone.0254001
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- Publication type:
- Article
BioNetBuilder2.0: bringing systems biology to chicken and other model organisms.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S6
- By:
- Publication type:
- Article
The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 176, doi. 10.1186/1471-2105-7-176
- By:
- Publication type:
- Article
PPII Helical Peptidomimetics Templated by Cation-π Interactions.
- Published in:
- ChemBioChem, 2016, v. 17, n. 19, p. 1824, doi. 10.1002/cbic.201600248
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- Publication type:
- Article
Improved Stability and Half-Life of Fluorinated Phosphotriesterase Using Rosetta.
- Published in:
- ChemBioChem, 2014, v. 15, n. 12, p. 1761, doi. 10.1002/cbic.201402062
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- Publication type:
- Article
For Whom the Bot Tolls: A Neural Networks Approach to Measuring Political Orientation of Twitter Bots in Russia.
- Published in:
- SAGE Open, 2019, v. 9, n. 2, p. N.PAG, doi. 10.1177/2158244019827715
- By:
- Publication type:
- Article
EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments.
- Published in:
- Plant Cell, 2016, v. 28, n. 10, p. 2365, doi. 10.1105/tpc.16.00158
- By:
- Publication type:
- Article