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Microbial species delineation using whole genome sequences.
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- Nucleic Acids Research, 2015, v. 43, n. 14, p. 6761, doi. 10.1093/nar/gkv657
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IMG 4 version of the integrated microbial genomes comparative analysis system.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D560, doi. 10.1093/nar/gkt963
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IMG/M 4 version of the integrated metagenome comparative analysis system.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919
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IMG/M: the integrated metagenome data management and comparative analysis system.
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- Nucleic Acids Research, 2012, p. D123, doi. 10.1093/nar/gkr975
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Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.
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- Nucleic Acids Research, 2009, v. 37, n. 7, p. 2096, doi. 10.1093/nar/gkp075
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CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining.
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- Nucleic Acids Research, 2008, v. 36, p. D69
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Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
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- Nature Biotechnology, 2018, v. 36, n. 4, p. 368, doi. 10.1038/nbt0418-368c
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1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
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- Nature Biotechnology, 2017, v. 35, n. 7, p. 676, doi. 10.1038/nbt.3886
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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.
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- Nature Methods, 2010, v. 7, n. 6, p. 455, doi. 10.1038/nmeth.1457
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The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).
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- Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
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High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0119-5
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Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0115-9
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Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0097-7
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High-quality draft genome sequence of Gracilimonas tropica CL-CB462 (DSM 19535), isolated from a Synechococcus culture.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0088-8
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y
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High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
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High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0073-2
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Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0078-x
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Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0080-3
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High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0048-3
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High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
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High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0049-2
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High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395<sup>T</sup> (DSM 45146<sup>T</sup>).
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7
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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0018-9
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High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0006-0
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High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0007-z
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High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-13
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Large-scale contamination of microbial isolate genomes by Illumina PhiX control.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-18
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
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Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.
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- Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
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Genome sequence of Ensifer arboris strain LMG 14919; a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 473, doi. 10.4056/sigs.4828625
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Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271).
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 462, doi. 10.4056/sigs.4458283
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Genome sequence of Burkholderia mimosarum strain LMG 23256, a Mimosa pigra microsymbiont from Anso, Taiwan.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 484, doi. 10.4056/sigs.4848627
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Genome sequence of Ensifer medicae strain WSM1115; an acid-tolerant Medicago-nodulating microsymbiont from Samothraki, Greece.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 514, doi. 10.4056/sigs.4938652
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Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 527, doi. 10.4056/sigs.4988693
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Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 551, doi. 10.4056/sigs.5008793
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Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 602, doi. 10.4056/sigs.4929626
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Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824
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High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6), a diphenol degrader with genes involved in the catechol pathway.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 783, doi. 10.4056/sigs.5088950
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1020, doi. 10.4056/sigs.5449586
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Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
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The complete genome sequence of Clostridium indolis DSM 755.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1089, doi. 10.4056/sigs.5281010
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Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
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Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2232 from Karijini National Park, Australia.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1168, doi. 10.4056/sigs.5018795
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Genome sequence of Microvirga lupini strain LUT6, a novel Lupinus alphaproteobacterial microsymbiont from Texas.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1159, doi. 10.4056/sigs.5249382
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Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016
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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565.
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- Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 220, doi. 10.4056/sigs.4468250
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Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075.
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- Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 294, doi. 10.4056/sigs.4538264
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Genome sequence of Ensifer sp. TW10; a Tephrosia wallichii (Biyani) microsymbiont native to the Indian Thar Desert.
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- Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 304, doi. 10.4056/sigs.4598281
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- Article