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Unraveling the dynamic transcriptomic changes during the dimorphic transition of Talaromyces marne.
Published in:
Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.136934
By:
- Minghao Du;
- Changyu Tao;
- Xueyan Hu;
- Yun Zhang;
- Jun Kan;
- Juan Wang;
- Ence Yang
Publication type:
Article
Antimicrobial Compounds Produced by Vaginal Lactobacillus crispatus Are Able to Strongly Inhibit Candida albicans Growth, Hyphal Formation and Regulate Virulence-related Gene Expressions.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00564
By:
- Shuai Wang;
- Qiangyi Wang;
- Ence Yang;
- Ling Yan;
- Tong Li;
- Hui Zhuang
Publication type:
Article
Regulatory basis for reproductive flexibility in a meningitis-causing fungal pathogen.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35549-y
By:
- Hu, Pengjie;
- Ding, Hao;
- Liu, Huimin;
- Yang, Yulin;
- Chen, Lei;
- He, Guang-Jun;
- Ke, Weixin;
- Zhu, Ping;
- Tian, Xiuyun;
- Peng, Yan;
- Shen, Zhenghao;
- Yao, Xiaoxia;
- Tao, Changyu;
- Yang, Ence;
- Liao, Guojian;
- Liu, Xiao;
- Wang, Linqi
Publication type:
Article
Two Sequential Clinical Isolates of Candida glabrata with Multidrug-Resistance to Posaconazole and Echinocandins.
Published in:
Antibiotics (2079-6382), 2021, v. 10, n. 10, p. 1217, doi. 10.3390/antibiotics10101217
By:
- Wang, Qiqi;
- Li, Yun;
- Cai, Xuan;
- Li, Ruoyu;
- Zheng, Bo;
- Yang, Ence;
- Liang, Tianyu;
- Yang, Xinyu;
- Wan, Zhe;
- Liu, Wei
Publication type:
Article
Additive, Epistatic, and Environmental Effects Through the Lens of Expression Variability QTL in a Twin Cohort.
Published in:
Genetics, 2014, v. 196, n. 2, p. 413, doi. 10.1534/genetics.113.157503
By:
- Gang Wang;
- Ence Yang;
- Brinkmeyer-Langford, Candice L.;
- Cai, James J.
Publication type:
Article
Functional response of the fungus Hirsutella rhossiliensis to the nematode, Heterodera glycines.
Published in:
SCIENCE CHINA Life Sciences, 2015, v. 58, n. 7, p. 704, doi. 10.1007/s11427-015-4868-6
By:
- Shu, Chi;
- Lai, YiLing;
- Yang, EnCe;
- Chen, SenYu;
- Xiang, MeiChun;
- Liu, XingZhong
Publication type:
Article
A transcription‐independent mechanism determines rapid periodic fluctuations of BRCA1 expression.
Published in:
EMBO Journal, 2023, v. 42, n. 15, p. 1, doi. 10.15252/embj.2022111951
By:
- Nie, Chen;
- Zhou, Xiao Albert;
- Zhou, Jiadong;
- Liu, Zelin;
- Gu, Yangyang;
- Liu, Wanchang;
- Zhan, Jun;
- Li, Shiwei;
- Xiong, Yundong;
- Zhou, Mei;
- Shen, Qinjian;
- Wang, Weibin;
- Yang, Ence;
- Wang, Jiadong
Publication type:
Article
Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing.
Published in:
2021
By:
- Wu, Nan;
- Ranjan, Piyush;
- Tao, Changyu;
- Liu, Chao;
- Yang, Ence;
- He, Bei;
- Erb-Downward, John R.;
- Bo, Shining;
- Zheng, Jiajia;
- Guo, Chenxia;
- Liu, Beibei;
- Sun, Lina;
- Yan, Wei;
- Wang, Meng;
- Wang, Wenting;
- Wen, Jianing;
- Yang, Ping;
- Yang, Lin;
- Tian, Qiaoshan;
- Dickson, Robert P.
Publication type:
journal article
MTM: a multi-task learning framework to predict individualized tissue gene expression profiles.
Published in:
Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad363
By:
- He, Guangyi;
- Chen, Maiyue;
- Bian, Yingnan;
- Yang, Ence
Publication type:
Article
Exploiting aberrant mRNA expression in autism for gene discovery and diagnosis.
Published in:
Human Genetics, 2016, v. 135, n. 7, p. 797, doi. 10.1007/s00439-016-1673-7
By:
- Guan, Jinting;
- Yang, Ence;
- Yang, Jizhou;
- Zeng, Yong;
- Ji, Guoli;
- Cai, James
Publication type:
Article
circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.69457
By:
- Zelin Liu;
- Changyu Tao;
- Shiwei Li;
- Minghao Du;
- Yongtai Bai;
- Xueyan Hu;
- Yu Li;
- Jian Chen;
- Ence Yang
Publication type:
Article
Gene expression responses of threespine stickleback to salinity: implications for salt-sensitive hypertension.
Published in:
Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00312
By:
- Gang Wang;
- Ence Yang;
- Smith, Kerri J.;
- Yong Zeng;
- Guoli Ji;
- Connon, Richard;
- Fangue, Nann A.;
- Cai, James J.
Publication type:
Article
Population-level expression variability of mitochondrial DNA-encoded genes in humans.
Published in:
European Journal of Human Genetics, 2014, v. 22, n. 9, p. 1093, doi. 10.1038/ejhg.2013.293
By:
- Wang, Gang;
- Yang, Ence;
- Mandhan, Ishita;
- Brinkmeyer-Langford, Candice L;
- Cai, James J
Publication type:
Article
Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate cryptococcal cellular differentiation.
Published in:
Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0665-2
By:
- Lin, Jianfeng;
- Zhao, Youbao;
- Ferraro, Aileen R.;
- Yang, Ence;
- Lewis, Zachary A.;
- Lin, Xiaorong
Publication type:
Article
Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses.
Published in:
Parasites & Vectors, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13071-023-05672-w
By:
- Hu, Xueyan;
- Zhao, Jie;
- Zhao, Junhui;
- Yang, Ence;
- Jia, Mozhi
Publication type:
Article
Characterization of the Intestinal Fungal Microbiome in HIV and HCV Mono-Infected or Co-Infected Patients.
Published in:
Viruses (1999-4915), 2022, v. 14, n. 8, p. 1811, doi. 10.3390/v14081811
By:
- Yin, Yue;
- Tuohutaerbieke, Maermaer;
- Feng, Chengjie;
- Li, Xinjie;
- Zhang, Yuqi;
- Xu, Qiang;
- Tu, Jing;
- Yang, Ence;
- Zou, Qinghua;
- Shen, Tao
Publication type:
Article
The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites.
Published in:
Genome Biology, 2022, v. 23, p. 1, doi. 10.1186/s13059-022-02804-w
By:
- She, Jianqi;
- Du, Minghao;
- Xu, Zhanzhan;
- Jin, Yueqi;
- Li, Yu;
- Zhang, Daoning;
- Tao, Changyu;
- Chen, Jian;
- Wang, Jiadong;
- Yang, Ence
Publication type:
Article
MADS-Box Transcription Factor MadsA Regulates Dimorphic Transition, Conidiation, and Germination of Talaromyces marneffei.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01781
By:
- Wang, Qiangyi;
- Li, Tong;
- Zhuang, Hui;
- Du, Minghao;
- Xiao, Liming;
- Yang, Ence;
- Wang, Shuai;
- Wang, Linqi;
- Liu, Linxia
Publication type:
Article
Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action.
Published in:
Human Molecular Genetics, 2016, v. 25, n. 22, p. 4911, doi. 10.1093/hmg/ddw314
By:
- Ence Yang;
- Gang Wang;
- Jizhou Yang;
- Beiyan Zhou;
- Yanan Tian;
- Cai, James J.
Publication type:
Article
Comparative Analysis of Clinical and Environmental Strains of Exophiala spinifera by Long-Reads Sequencing and RNAseq Reveal Adaptive Strategies.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.01880
By:
- Song, Yinggai;
- Du, Minghao;
- Menezes da Silva, Nickolas;
- Yang, Ence;
- Vicente, Vania A.;
- Sybren de Hoog, G.;
- Li, Ruoyu
Publication type:
Article
CVCDAP: an integrated platform for molecular and clinical analysis of cancer virtual cohorts.
Published in:
Nucleic Acids Research, 2020, v. 48, n. W1, p. W463, doi. 10.1093/nar/gkaa423
By:
- Guan, Xiaoqing;
- Cai, Meng;
- Du, Yang;
- Yang, Ence;
- Ji, Jiafu;
- Wu, Jianmin
Publication type:
Article
The lncRNA RZE1 Controls Cryptococcal Morphological Transition.
Published in:
PLoS Genetics, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.pgen.1005692
By:
- Chacko, Nadia;
- Zhao, Youbao;
- Yang, Ence;
- Wang, Linqi;
- Cai, James J.;
- Lin, Xiaorong
Publication type:
Article
Aberrant Gene Expression in Humans.
Published in:
PLoS Genetics, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pgen.1004942
By:
- Zeng, Yong;
- Wang, Gang;
- Yang, Ence;
- Ji, Guoli;
- Brinkmeyer-Langford, Candice L.;
- Cai, James J.
Publication type:
Article
Signature Gene Expression Reveals Novel Clues to the Molecular Mechanisms of Dimorphic Transition in Penicillium marneffei.
Published in:
PLoS Genetics, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pgen.1004662
By:
- Yang, Ence;
- Chow, Wang-Ngai;
- Wang, Gang;
- Woo, Patrick C. Y.;
- Lau, Susanna K. P.;
- Yuen, Kwok-Yung;
- Lin, Xiaorong;
- Cai, James J.
Publication type:
Article
Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex.
Published in:
Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1701-8
By:
- Liu, Zelin;
- Ran, Yuan;
- Tao, Changyu;
- Li, Sichen;
- Chen, Jian;
- Yang, Ence
Publication type:
Article
A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiation.
Published in:
PLoS Genetics, 2021, p. 1, doi. 10.1371/journal.pgen.1009817
By:
- Hu, Pengjie;
- Ding, Hao;
- Shen, Lan;
- He, Guang-Jun;
- Liu, Huimin;
- Tian, Xiuyun;
- Tao, Changyu;
- Bai, Xiangzheng;
- Liang, Jingnan;
- Jin, Cheng;
- Xu, Xinping;
- Yang, Ence;
- Wang, Linqi
Publication type:
Article
Mapping and genotypic analysis of the NK-lysin gene in chicken.
Published in:
Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-43
By:
- Mi Ok Lee;
- Yang, Ence;
- Morisson, Mireille;
- Vignal, Alain;
- Yong-Zhen Huang;
- Cheng, Hans H.;
- Muir, William M.;
- Lamont, Susan J.;
- Hyun Soon Lillehoj;
- Sung Hyen Lee;
- Womack, James E.
Publication type:
Article
Th2 cells infiltrating high-grade serous ovarian cancer: a feature that may account for the poor prognosis.
Published in:
Journal of Gynecologic Oncology, 2023, v. 34, n. 4, p. 1, doi. 10.3802/jgo.2023.34.e48
By:
- Hao Su;
- Yueqi Jin;
- Changyu Tao;
- Hua Yang;
- Ence Yang;
- Wei-Guang Zhang;
- Fengzhi Feng
Publication type:
Article

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