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- Title
Pedimap: Software for the Visualization of Genetic and Phenotypic Data in Pedigrees.
- Authors
Voorrips, Roeland E.; Bink, Marco C. A. M.; van de Weg, W. Eric
- Abstract
Pedimap is a user-friendly software tool for visualizing phenotypic and genotypic data for related individuals linked in pedigrees. Genetic data can include marker scores, Identity-by-Descent probabilities, and marker linkage map positions, allowing the visualization of haplotypes through lineages. The pedigrees can accommodate all types of inheritance, including selfing, cloning, and repeated backcrossing, and all ploidy levels are supported. Visual association of the genetic data with phenotypic data simplifies the exploration of large data sets, thereby improving breeding decision making. Data are imported from text files; in addition data exchange with other software packages (FlexQTLTM and GenomeStudioTM) is possible. Instructions for use and an executable version compatible with the Windows platform are available for free from http://www.plantbreeding.wur.nl/UK/software_pedimap.html.
- Subjects
COMPUTER software; DATA visualization; GENE mapping; COMPUTERS in genetics; GENEALOGY software
- Publication
Journal of Heredity, 2012, Vol 103, Issue 6, p903
- ISSN
0022-1503
- Publication type
Article
- DOI
10.1093/jhered/ess060