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- Title
MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions.
- Authors
Loubaton, Rodolphe; Champagnat, Nicolas; Vallois, Pierre; Vallat, Laurent
- Abstract
Motivation The dynamic transcriptional mechanisms that govern eukaryotic cell function can now be analyzed by RNA sequencing. However, the packages currently available for the analysis of raw sequencing data do not provide automatic analysis of complex experimental designs with multiple biological conditions and multiple analysis time-points. Results The MultiRNAflow suite combines several packages in a unified framework allowing exploratory and supervised statistical analyses of temporal data for multiple biological conditions. Availability and implementation The R package MultiRNAflow is freely available on Bioconductor (https://bioconductor.org/packages/MultiRNAflow/), and the latest version of the source code is available on a GitHub repository (https://github.com/loubator/MultiRNAflow).
- Subjects
RNA sequencing; SOURCE code; EUKARYOTIC cells; CELL physiology; SEQUENCE analysis
- Publication
Bioinformatics, 2024, Vol 40, Issue 5, p1
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btae315