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Supervised learning of enhancer–promoter specificity based on genome-wide perturbation studies highlights areas for improvement in learning.
Published in:
Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae367
By:
- Barth, Dylan;
- Van, Richard;
- Cardwell, Jonathan;
- Han, Mira V
Publication type:
Article
Variability in MUC5B Expression Is Dependent on Genotype and Endotype in Idiopathic Pulmonary Fibrosis.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2023, v. 207, n. 10, p. 1401, doi. 10.1164/rccm.202209-1835LE
By:
- Ghosh, Auyon J.;
- Moll, Matthew;
- Hobbs, Brian D.;
- Cardwell, Jonathan;
- Saferali, Aabida;
- Castaldi, Peter J.;
- Cho, Michael H.;
- Silverman, Edwin K.;
- Yang, Ivana V.;
- Hersh, Craig P.
Publication type:
Article
Idiopathic Pulmonary Fibrosis Is Associated with Common Genetic Variants and Limited Rare Variants.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2023, v. 207, n. 9, p. 1194, doi. 10.1164/rccm.202207-1331OC
By:
- Peljto, Anna L.;
- Blumhagen, Rachel Z.;
- Walts, Avram D.;
- Cardwell, Jonathan;
- Powers, Julia;
- Corte, Tamera J.;
- Dickinson, Joanne L.;
- Glaspole, Ian;
- Moodley, Yuben P.;
- Vasakova, Martina Koziar;
- Bendstrup, Elisabeth;
- Davidsen, Jesper R.;
- Borie, Raphael;
- Crestani, Bruno;
- Dieude, Philippe;
- Bonella, Francesco;
- Costabel, Ulrich;
- Gudmundsson, Gunnar;
- Donnelly, Seamas C.;
- Egan, Jim
Publication type:
Article
Colocalization of Gene Expression and DNA Methylation with Genetic Risk Variants Supports Functional Roles of and in Idiopathic Pulmonary Fibrosis.
Published in:
2022
By:
- Borie, Raphael;
- Cardwell, Jonathan;
- Konigsberg, Iain R.;
- Moore, Camille M.;
- Weiming Zhang;
- Sasse, Sarah K.;
- Gally, Fabienne;
- Dobrinskikh, Evgenia;
- Walts, Avram;
- Powers, Julie;
- Brancato, Janna;
- Rojas, Mauricio;
- Wolters, Paul J.;
- Brown, Kevin K.;
- Blackwell, Timothy S.;
- Tomoko Nakanishi;
- Richards, J. Brent;
- Gerber, Anthony N.;
- Fingerlin, Tasha E.;
- Sachs, Norman
Publication type:
journal article
Preclinical Pulmonary Fibrosis Circulating Protein Biomarkers.
Published in:
2020
By:
- Mathai, Susan K.;
- Cardwell, Jonathan;
- Metzger, Fabian;
- Powers, Julia;
- Walts, Avram D.;
- Kropski, Jonathan A.;
- Eickelberg, Oliver;
- Hauck, Stefanie M.;
- Yang, Ivana V.;
- Schwartz, David A.
Publication type:
Letter
Chronic Hypersensitivity Pneumonitis, an Interstitial Lung Disease with Distinct Molecular Signatures.
Published in:
2020
By:
- Haruhiko Furusawa;
- Cardwell, Jonathan H.;
- Tsukasa Okamoto;
- Walts, Avram D.;
- Konigsberg, Iain R.;
- Kurche, Jonathan S.;
- Bang, Tami J.;
- Schwarz, Marvin I.;
- Brown, Kevin K.;
- Kropski, Jonathan A.;
- Rojas, Mauricio;
- Cool, Carlyne D.;
- Lee, Joyce S.;
- Wolters, Paul J.;
- Yang, Ivana V.;
- Schwartz, David A.;
- Furusawa, Haruhiko;
- Okamoto, Tsukasa
Publication type:
journal article
Resequencing Study Confirms That Host Defense and Cell Senescence Gene Variants Contribute to the Risk of Idiopathic Pulmonary Fibrosis.
Published in:
2019
By:
- Moore, Camille;
- Blumhagen, Rachel Z;
- Yang, Ivana V;
- Walts, Avram;
- Powers, Julie;
- Walker, Tarik;
- Bishop, Makenna;
- Russell, Pamela;
- Vestal, Brian;
- Cardwell, Jonathan;
- Markin, Cheryl R;
- Mathai, Susan K;
- Schwarz, Marvin I;
- Steele, Mark P;
- Lee, Joyce;
- Brown, Kevin K;
- Loyd, James E;
- Crapo, James D;
- Silverman, Edwin K;
- Cho, Michael H
Publication type:
journal article
Epithelial Endoplasmic Reticulum Stress Enhances the Risk of Muc5b-associated Lung Fibrosis.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2023, v. 68, n. 1, p. 62, doi. 10.1165/rcmb.2022-0252OC
By:
- Dobrinskikh, Evgenia;
- Hennessy, Corinne E.;
- Kurche, Jonathan S.;
- Kim, Eunjoo;
- Estrella, Alani M.;
- Cardwell, Jonathan;
- Yang, Ivana V.;
- Schwartz, David A.
Publication type:
Article
Epithelial ER stress enhances the risk of Muc5b associated lung fibrosis.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2023, v. 68, n. 1, p. E1, doi. 10.1165/rcmb.2022-0252oc
By:
- Dobrinskikh, Evgenia;
- Hennessy, Corinne E.;
- Kurche, Jonathan S.;
- Kim, Eunjoo;
- Estrella, Alani M.;
- Cardwell, Jonathan;
- Yang, Ivana V.;
- Schwartz, David A.
Publication type:
Article
Aberrant Multiciliogenesis in Idiopathic Pulmonary Fibrosis.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2022, v. 67, n. 2, p. 188, doi. 10.1165/rcmb.2021-0554OC
By:
- Eunjoo Kim;
- Mathai, Susan K.;
- Stancil, Ian T.;
- Xiaoqian Ma;
- Hernandez-Gutierrez, Ashley;
- Becerra, Jessica N.;
- Marrero-Torres, Emilette;
- Hennessy, Corinne E.;
- Hatakka, Kristina;
- Wartchow, Eric P.;
- Estrella, Alani;
- Huber, Jonathan P.;
- Cardwell, Jonathan H.;
- Burnham, Ellen L.;
- Yingze Zhang;
- Evans, Christopher M.;
- Vladar, Eszter K.;
- Schwartz, David A.;
- Dobrinskikh, Evgenia;
- Yang, Ivana V.
Publication type:
Article
Molecular Signatures of Idiopathic Pulmonary Fibrosis.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2021, v. 65, n. 4, p. 430, doi. 10.1165/rcmb.2020-0546OC
By:
- Konigsberg, Iain R.;
- Borie, Raphael;
- Walts, Avram D.;
- Cardwell, Jonathan;
- Rojas, Mauricio;
- Metzger, Fabian;
- Hauck, Stefanie M.;
- Fingerlin, Tasha E.;
- Yang, Ivana V.;
- Schwartz, David A.
Publication type:
Article
A2ML1 and otitis media: novel variants, differential expression, and relevant pathways.
Published in:
Human Mutation, 2019, v. 40, n. 8, p. 1156, doi. 10.1002/humu.23769
By:
- Larson, Eric D.;
- Magno, Jose Pedrito M.;
- Steritz, Matthew J.;
- Llanes, Erasmo Gonzalo d.V.;
- Cardwell, Jonathan;
- Pedro, Melquiadesa;
- Roberts, Tori Bootpetch;
- Einarsdottir, Elisabet;
- Rosanes, Rose Anne Q.;
- Greenlee, Christopher;
- Santos, Rachel Ann P.;
- Yousaf, Ayesha;
- Streubel, Sven‐Olrik;
- Santos, Aileen Trinidad R.;
- Ruiz, Amanda G.;
- Lagrana‐Villagracia, Sheryl Mae;
- Ray, Dylan;
- Yarza, Talitha Karisse L.;
- Scholes, Melissa A.;
- Anderson, Catherine B.
Publication type:
Article

Found: 12