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- Title
Metagenome sequencing and 768 microbial genomes from cold seep in South China Sea.
- Authors
Zhang, Huan; Wang, Minxiao; Wang, Hao; Chen, Hao; Cao, Lei; Zhong, Zhaoshan; Lian, Chao; Zhou, Li; Li, Chaolun
- Abstract
Cold seep microbial communities are fascinating ecosystems on Earth which provide unique models for understanding the living strategies in deep-sea distinct environments. In this study, 23 metagenomes were generated from samples collected in the Site-F cold seep field in South China Sea, including the sea water closely above the invertebrate communities, the cold seep fluids, the fluids under the invertebrate communities and the sediment column around the seep vent. By binning tools, we retrieved a total of 768 metagenome assembled genome (MAGs) that were estimated to be >60% complete. Of the MAGs, 61 were estimated to be >90% complete, while an additional 105 were >80% complete. Phylogenomic analysis revealed 597 bacterial and 171 archaeal MAGs, of which nearly all were distantly related to known cultivated isolates. In the 768 MAGs, the abundant Bacteria in phylum level included Proteobacteria, Desulfobacterota, Bacteroidota, Patescibacteria and Chloroflexota, while the abundant Archaea included Asgardarchaeota, Thermoplasmatota, and Thermoproteota. These results provide a dataset available for further interrogation of deep-sea microbial ecology. Measurement(s) metagenome assembled genomes Technology Type(s) metagenome sequencing and genome binning Sample Characteristic - Organism microorganism Sample Characteristic - Environment marine cold seep biome Sample Characteristic - Location South China Sea
- Subjects
MICROBIAL genomes; SHOTGUN sequencing; INVERTEBRATE communities; MICROBIAL ecology; DEEP-sea ecology; COLD adaptation; SEAWATER
- Publication
Scientific Data, 2022, Vol 9, Issue 1, p1
- ISSN
2052-4463
- Publication type
Article
- DOI
10.1038/s41597-022-01586-x