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Voriconazole metabolism is associated with the number of skin cancers per patient.
Published in:
Archives of Dermatological Research, 2024, v. 316, n. 6, p. 1, doi. 10.1007/s00403-024-03135-5
By:
- Ike, Jacqueline I.;
- Smith, Isabelle T.;
- Mosley, Dominique;
- Madden, Christopher;
- Grossarth, Sarah;
- Halle, Briana R.;
- Lewis, Adam;
- Mentch, Frank;
- Hakonarson, Hakon;
- Bastarache, Lisa;
- Wheless, Lee
Publication type:
Article
Developing real‐world evidence from real‐world data: Transforming raw data into analytical datasets.
Published in:
Learning Health Systems, 2022, v. 6, n. 1, p. 1, doi. 10.1002/lrh2.10293
By:
- Bastarache, Lisa;
- Brown, Jeffrey S.;
- Cimino, James J.;
- Dorr, David A.;
- Embi, Peter J.;
- Payne, Philip R.O.;
- Wilcox, Adam B.;
- Weiner, Mark G.
Publication type:
Article
Association Between a Common, Benign Genotype and Unnecessary Bone Marrow Biopsies Among African American Patients.
Published in:
2021
By:
- Van Driest, Sara L.;
- Abul-Husn, Noura S.;
- Glessner, Joseph T.;
- Bastarache, Lisa;
- Nirenberg, Sharon;
- Schildcrout, Jonathan S.;
- Eswarappa, Meghana S.;
- Belbin, Gillian M.;
- Shaffer, Christian M.;
- Mentch, Frank;
- Connolly, John;
- Shi, Mingjian;
- Stein, C. Michael;
- Roden, Dan M.;
- Hakonarson, Hakon;
- Cox, Nancy J.;
- Borinstein, Scott C.;
- Mosley, Jonathan D.
Publication type:
journal article
Association of Genetic Risk of Obesity with Postoperative Complications Using Mendelian Randomization.
Published in:
World Journal of Surgery, 2020, v. 44, n. 1, p. 84, doi. 10.1007/s00268-019-05202-9
By:
- Robinson, Jamie R.;
- Carroll, Robert J.;
- Bastarache, Lisa;
- Chen, Qingxia;
- Mou, Zongyang;
- Wei, Wei-Qi;
- Connolly, John J.;
- Mentch, Frank;
- Sleiman, Patrick;
- Crane, Paul K.;
- Hebbring, Scott J.;
- Stanaway, Ian B.;
- Crosslin, David R.;
- Gordon, Adam S.;
- Rosenthal, Elisabeth A.;
- Carrell, David;
- Hayes, M. Geoffrey;
- Wei, Wei;
- Petukhova, Lynn;
- Namjou, Bahram
Publication type:
Article
Machine‐learning based classification of Frontotemporal dementia in electronic health records for genetic discovery.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.080074
By:
- Below, Jennifer E.;
- Shaw, Douglas;
- Evans, Grahame;
- Baker, James T;
- Bohlender, Ryan J;
- Petty, Alex;
- Petty, Lauren E;
- Roshani, Rashedeh;
- Lifferth, Jonathan;
- Bastarache, Lisa;
- Naj, Adam C.;
- Bush, William S.;
- Darby, Ryan;
- McMillan, Corey T;
- Samuels, David;
- Huff, Chad D
Publication type:
Article
Machine‐learning based classification of Frontotemporal dementia in electronic health records for genetic discovery.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.080074
By:
- Below, Jennifer E.;
- Shaw, Douglas;
- Evans, Grahame;
- Baker, James T;
- Bohlender, Ryan J;
- Petty, Alex;
- Petty, Lauren E;
- Roshani, Rashedeh;
- Lifferth, Jonathan;
- Bastarache, Lisa;
- Naj, Adam C.;
- Bush, William S.;
- Darby, Ryan;
- McMillan, Corey T;
- Samuels, David;
- Huff, Chad D
Publication type:
Article
Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients.
Published in:
2022
By:
- Larach, Daniel B.;
- Lewis, Adam;
- Bastarache, Lisa;
- Pandit, Anita;
- He, Jing;
- Sinha, Anik;
- Douville, Nicholas J.;
- Heung, Michael;
- Mathis, Michael R.;
- Mosley, Jonathan D.;
- Wanderer, Jonathan P.;
- Kheterpal, Sachin;
- Zawistowski, Matthew;
- Brummett, Chad M.;
- Siew, Edward D.;
- Robinson-Cohen, Cassianne;
- Kertai, Miklos D.
Publication type:
journal article
Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6192-1
By:
- Hughey, Jacob J.;
- Rhoades, Seth D.;
- Fu, Darwin Y.;
- Bastarache, Lisa;
- Denny, Joshua C.;
- Chen, Qingxia
Publication type:
Article
Linking rare and common disease vocabularies by mapping between the human phenotype ontology and phecodes.
Published in:
JAMIA Open, 2023, v. 6, n. 1, p. 1, doi. 10.1093/jamiaopen/ooad007
By:
- McArthur, Evonne;
- Bastarache, Lisa;
- Capra, John A.
Publication type:
Article
Population genetic testing and SERPINA1 sequencing identifies unidentified alpha-1 antitrypsin deficiency alleles and gene-environment interaction with hepatitis C infection.
Published in:
PLoS ONE, 2023, v. 18, n. 8, p. 1, doi. 10.1371/journal.pone.0286469
By:
- Schuler, Bryce A.;
- Bastarache, Lisa;
- Wang, Janey;
- He, Jing;
- Van Driest, Sara L.;
- Denny, Joshua C.
Publication type:
Article
Undiagnosed Disease Network collaborative approach in diagnosing rare disease in a patient with a mosaic CACNA1D variant.
Published in:
American Journal of Medical Genetics. Part A, 2024, v. 194, n. 7, p. 1, doi. 10.1002/ajmg.a.63597
By:
- Ezell, Kimberly M.;
- Tinker, Rory J.;
- Furuta, Yutaka;
- Gulsevin, Alican;
- Bastarache, Lisa;
- Hamid, Rizwan;
- Cogan, Joy D.;
- Rives, Lynette;
- Neumann, Serena;
- Corner, Brian;
- Kozuria, Mary;
- Phillips, John A.;
- Adams, David R.;
- Afzali, Ben;
- Al‐Beshri, Ali;
- Allworth, Aimee;
- Alvarez, Raquel L.;
- Alvey, Justin;
- Andrews, Ashley;
- Ashley, Euan A.
Publication type:
Article
Data from electronic healthcare records expand our understanding of X‐linked genetic diseases.
Published in:
American Journal of Medical Genetics. Part A, 2024, v. 194, n. 5, p. 1, doi. 10.1002/ajmg.a.63527
By:
- Tinker, Rory J.;
- Bastarache, Lisa;
- Ezell, Kimberly;
- Neumann, Serena M.;
- Furuta, Yutaka;
- Morgan, Karee A.;
- Phillips, John A.
Publication type:
Article
The contribution of mosaicism to genetic diseases and de novo pathogenic variants.
Published in:
American Journal of Medical Genetics. Part A, 2023, v. 191, n. 10, p. 2482, doi. 10.1002/ajmg.a.63309
By:
- Tinker, Rory J.;
- Bastarache, Lisa;
- Ezell, Kimberly;
- Kobren, Shilpa Nadimpalli;
- Esteves, Cecilia;
- Rosenfeld, Jill A.;
- Macnamara, Ellen F.;
- Hamid, Rizwan;
- Cogan, Joy D.;
- Rinker, David;
- Mukharjee, Souhrid;
- Glass, Ian;
- Dipple, Katrina;
- Phillips, John A.
Publication type:
Article
Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.
Published in:
Nature Biotechnology, 2013, v. 31, n. 12, p. 1102, doi. 10.1038/nbt.2749
By:
- Denny, Joshua C;
- Bastarache, Lisa;
- Ritchie, Marylyn D;
- Carroll, Robert J;
- Zink, Raquel;
- Mosley, Jonathan D;
- Field, Julie R;
- Pulley, Jill M;
- Ramirez, Andrea H;
- Bowton, Erica;
- Basford, Melissa A;
- Carrell, David S;
- Peissig, Peggy L;
- Kho, Abel N;
- Pacheco, Jennifer A;
- Rasmussen, Luke V;
- Crosslin, David R;
- Crane, Paul K;
- Pathak, Jyotishman;
- Bielinski, Suzette J
Publication type:
Article
phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants.
Published in:
Bioinformatics, 2022, v. 38, n. 21, p. 4972, doi. 10.1093/bioinformatics/btac619
By:
- Aref, Layla;
- Bastarache, Lisa;
- Hughey, Jacob J
Publication type:
Article
Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS.
Published in:
Bioinformatics, 2022, v. 38, n. 8, p. 2297, doi. 10.1093/bioinformatics/btac086
By:
- Irlmeier, Rebecca;
- Hughey, Jacob J;
- Bastarache, Lisa;
- Denny, Joshua C;
- Chen, Qingxia
Publication type:
Article
Clinical associations with a polygenic predisposition to benign lower white blood cell counts.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47804-5
By:
- Mosley, Jonathan D.;
- Shelley, John P.;
- Dickson, Alyson L.;
- Zanussi, Jacy;
- Daniel, Laura L.;
- Zheng, Neil S.;
- Bastarache, Lisa;
- Wei, Wei-Qi;
- Shi, Mingjian;
- Jarvik, Gail P.;
- Rosenthal, Elisabeth A.;
- Khan, Atlas;
- Sherafati, Alborz;
- Kullo, Iftikhar J.;
- Walunas, Theresa L.;
- Glessner, Joseph;
- Hakonarson, Hakon;
- Cox, Nancy J.;
- Roden, Dan M.;
- Frangakis, Stephan G.
Publication type:
Article
Exploiting the GTEx resources to decipher the mechanisms at GWAS loci.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-020-02252-4
By:
- Barbeira, Alvaro N.;
- Bonazzola, Rodrigo;
- Gamazon, Eric R.;
- Liang, Yanyu;
- Park, YoSon;
- Kim-Hellmuth, Sarah;
- Wang, Gao;
- Jiang, Zhuoxun;
- Zhou, Dan;
- Hormozdiari, Farhad;
- Liu, Boxiang;
- Rao, Abhiram;
- Hamel, Andrew R.;
- Pividori, Milton D.;
- Aguet, François;
- Bastarache, Lisa;
- Jordan, Daniel M.;
- Verbanck, Marie;
- Do, Ron;
- Stephens, Matthew
Publication type:
Article
TYK2 Protein-Coding Variants Protect against Rheumatoid Arthritis and Autoimmunity, with No Evidence of Major Pleiotropic Effects on Non-Autoimmune Complex Traits.
Published in:
PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122271
By:
- Diogo, Dorothée;
- Bastarache, Lisa;
- Liao, Katherine P.;
- Graham, Robert R.;
- Fulton, Robert S.;
- Greenberg, Jeffrey D.;
- Eyre, Steve;
- Bowes, John;
- Cui, Jing;
- Lee, Annette;
- Pappas, Dimitrios A.;
- Kremer, Joel M.;
- Barton, Anne;
- Coenen, Marieke J. H.;
- Franke, Barbara;
- Kiemeney, Lambertus A.;
- Mariette, Xavier;
- Richard-Miceli, Corrine;
- Canhão, Helena;
- Fonseca, João E.
Publication type:
Article
Integrating EMR-Linked and <i>In Vivo</i> Functional Genetic Data to Identify New Genotype-Phenotype Associations.
Published in:
PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100322
By:
- Mosley, Jonathan D.;
- Van Driest, Sara L.;
- Weeke, Peter E.;
- Delaney, Jessica T.;
- Wells, Quinn S.;
- Bastarache, Lisa;
- Roden, Dan M.;
- Denny, Josh C.
Publication type:
Article
Mechanistic Phenotypes: An Aggregative Phenotyping Strategy to Identify Disease Mechanisms Using GWAS Data.
Published in:
PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081503
By:
- Mosley, Jonathan D.;
- Van Driest, Sara L.;
- Larkin, Emma K.;
- Weeke, Peter E.;
- Witte, John S.;
- Wells, Quinn S.;
- Karnes, Jason H.;
- Guo, Yan;
- Bastarache, Lisa;
- Olson, Lana M.;
- McCarty, Catherine A.;
- Pacheco, Jennifer A.;
- Jarvik, Gail P.;
- Carrell, David S.;
- Larson, Eric B.;
- Crosslin, David R.;
- Kullo, Iftikhar J.;
- Tromp, Gerard;
- Kuivaniemi, Helena;
- Carey, David J.
Publication type:
Article
A Phenome-Wide Association Study Identifies a Novel Asthma Risk Locus Near TERC.
Published in:
2016
By:
- Claar, Dru D.;
- Larkin, Emma K.;
- Bastarache, Lisa;
- Blackwell, Timothy S.;
- Loyd, James E.;
- Hartert, Tina V.;
- Denny, Joshua C.;
- Kropski, Jonathan A.
Publication type:
Letter
LabWAS: Novel findings and study design recommendations from a meta-analysis of clinical labs in two independent biobanks.
Published in:
PLoS Genetics, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pgen.1009077
By:
- Goldstein, Jeffery A.;
- Weinstock, Joshua S.;
- Bastarache, Lisa A.;
- Larach, Daniel B.;
- Fritsche, Lars G.;
- Schmidt, Ellen M.;
- Brummett, Chad M.;
- Kheterpal, Sachin;
- Abecasis, Goncalo R.;
- Denny, Joshua C.;
- Zawistowski, Matthew
Publication type:
Article
A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.
Published in:
Human Genetics, 2014, v. 133, n. 1, p. 95, doi. 10.1007/s00439-013-1355-7
By:
- Shameer, Khader;
- Denny, Joshua;
- Ding, Keyue;
- Jouni, Hayan;
- Crosslin, David;
- Andrade, Mariza;
- Chute, Christopher;
- Peissig, Peggy;
- Pacheco, Jennifer;
- Li, Rongling;
- Bastarache, Lisa;
- Kho, Abel;
- Ritchie, Marylyn;
- Masys, Daniel;
- Chisholm, Rex;
- Larson, Eric;
- McCarty, Catherine;
- Roden, Dan;
- Jarvik, Gail;
- Kullo, Iftikhar
Publication type:
Article
A phenome-wide association study to discover pleiotropic effects of PCSK9, APOB, and LDLR.
Published in:
NPJ Genomic Medicine, 2019, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41525-019-0078-7
By:
- Safarova, Maya S.;
- Satterfield, Benjamin A.;
- Fan, Xiao;
- Austin, Erin E.;
- Ye, Zhan;
- Bastarache, Lisa;
- Zheng, Neil;
- Ritchie, Marylyn D.;
- Borthwick, Kenneth M.;
- Williams, Marc S.;
- Larson, Eric B.;
- Scrol, Aaron;
- Jarvik, Gail P.;
- Crosslin, David R.;
- Leppig, Kathleen;
- Rasmussen-Torvik, Laura J.;
- Pendergrass, Sarah A.;
- Sturm, Amy C.;
- Namjou, Bahram;
- Shah, Amy Sanghavi
Publication type:
Article
A phenome-wide association study to discover pleiotropic effects of PCSK9, APOB, and LDLR.
Published in:
NPJ Genomic Medicine, 2019, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41525-019-0078-7
By:
- Safarova, Maya S.;
- Satterfield, Benjamin A.;
- Fan, Xiao;
- Austin, Erin E.;
- Ye, Zhan;
- Bastarache, Lisa;
- Zheng, Neil;
- Ritchie, Marylyn D.;
- Borthwick, Kenneth M.;
- Williams, Marc S.;
- Larson, Eric B.;
- Scrol, Aaron;
- Jarvik, Gail P.;
- Crosslin, David R.;
- Leppig, Kathleen;
- Rasmussen-Torvik, Laura J.;
- Pendergrass, Sarah A.;
- Sturm, Amy C.;
- Namjou, Bahram;
- Shah, Amy Sanghavi
Publication type:
Article
11 Novel Systematic Method for Identifying Congenital Anomaly Cases in Electronic Health Record Databases.
Published in:
2024
By:
- Brokamp, Elly;
- Bastarache, Lisa;
- Cox, Nancy;
- Hamid, Rizwan;
- Khanakari, Nikhil K.;
- Hooker, Gillian;
- Shuey, Megan
Publication type:
Abstract
Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index.
Published in:
Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00250
By:
- Cronin, Robert M.;
- Field, Julie R.;
- Bradford, Yuki;
- Shaffer, Christian M.;
- Carroll, Robert J.;
- Mosley, Jonathan D.;
- Bastarache, Lisa;
- Edwards, Todd L.;
- Hebbring, Scott J.;
- Lin, Simon;
- Hindorff, Lucia A.;
- Crane, Paul K.;
- Pendergrass, Sarah A.;
- Ritchie, Marylyn D.;
- Crawford, Dana C.;
- Pathak, Jyotishman;
- Bielinski, Suzette J.;
- Carrell, David S.;
- Crosslin, David R.;
- Ledbetter, David H.
Publication type:
Article
Laboratory Predictors of Hemolytic Anemia in Patients With Systemic Loxoscelism.
Published in:
2022
By:
- Jacobs, Jeremy W;
- Bastarache, Lisa;
- Thompson, Mary Ann
Publication type:
journal article
New Insights into Clinical and Mechanistic Heterogeneity of the Acute Respiratory Distress Syndrome Summary of the Aspen Lung Conference 2021.
Published in:
American Journal of Respiratory Cell & Molecular Biology, 2022, v. 67, n. 3, p. 284, doi. 10.1165/rcmb.2022-0089WS
By:
- Martin, Thomas R.;
- Zemans, Rachel L.;
- Ware, Lorraine B.;
- Schmidt, Eric P.;
- Riches, David W. H.;
- Bastarache, Lisa;
- Calfee, Carolyn S.;
- Desai, Tushar J.;
- Herold, Susanne;
- Hough, Catherine L.;
- Looney, Mark R.;
- Matthay, Michael A.;
- Meyer, Nuala;
- Parikh, Samir M.;
- Stevens, Troy;
- Thompson, B. Taylor
Publication type:
Article
Comparison of phenomic profiles in the All of Us Research Program against the US general population and the UK Biobank.
Published in:
Journal of the American Medical Informatics Association, 2024, v. 31, n. 4, p. 846, doi. 10.1093/jamia/ocad260
By:
- Zeng, Chenjie;
- Schlueter, David J;
- Tran, Tam C;
- Babbar, Anav;
- Cassini, Thomas;
- Bastarache, Lisa A;
- Denny, Josh C
Publication type:
Article
Systematic replication of smoking disease associations using survey responses and EHR data in the All of Us Research Program.
Published in:
Journal of the American Medical Informatics Association, 2024, v. 31, n. 1, p. 139, doi. 10.1093/jamia/ocad205
By:
- Schlueter, David J;
- Sulieman, Lina;
- Mo, Huan;
- Keaton, Jacob M;
- Ferrara, Tracey M;
- Williams, Ariel;
- Qian, Jun;
- Stubblefield, Onajia;
- Zeng, Chenjie;
- Tran, Tam C;
- Bastarache, Lisa;
- Dai, Jian;
- Babbar, Anav;
- Ramirez, Andrea;
- Goleva, Slavina B;
- Denny, Joshua C
Publication type:
Article
Knowledgebase strategies to aid interpretation of clinical correlation research.
Published in:
Journal of the American Medical Informatics Association, 2023, v. 30, n. 7, p. 1257, doi. 10.1093/jamia/ocad078
By:
- Stead, William W;
- Lewis, Adam;
- Giuse, Nunzia B;
- Koonce, Taneya Y;
- Bastarache, Lisa
Publication type:
Article
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources.
Published in:
2022
By:
- Wiley, Ken;
- Findley, Laura;
- Goldrich, Madison;
- Rakhra-Burris, Tejinder K;
- Stevens, Ana;
- Williams, Pamela;
- Bult, Carol J;
- Chisholm, Rex;
- Deverka, Patricia;
- Ginsburg, Geoffrey S;
- Green, Eric D;
- Jarvik, Gail;
- Mensah, George A;
- Ramos, Erin;
- Relling, Mary V;
- Roden, Dan M;
- Rowley, Robb;
- Alterovitz, Gil;
- Aronson, Samuel;
- Bastarache, Lisa
Publication type:
journal article
Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers.
Published in:
2021
By:
- Madhavan, Subha;
- Bastarache, Lisa;
- Brown, Jeffrey S;
- Butte, Atul J;
- Dorr, David A;
- Embi, Peter J;
- Friedman, Charles P;
- Johnson, Kevin B;
- Moore, Jason H;
- Kohane, Isaac S;
- Payne, Philip R O;
- Tenenbaum, Jessica D;
- Weiner, Mark G;
- Wilcox, Adam B;
- Ohno-Machado, Lucila
Publication type:
journal article
Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease.
Published in:
2019
By:
- Bastarache, Lisa;
- Hughey, Jacob J;
- Goldstein, Jeffrey A;
- Bastraache, Julie A;
- Das, Satya;
- Zaki, Neil Charles;
- Zeng, Chenjie;
- Tang, Leigh Anne;
- Roden, Dan M;
- Denny, Joshua C
Publication type:
journal article
Evaluating electronic health record data sources and algorithmic approaches to identify hypertensive individuals.
Published in:
2017
By:
- Teixeira, Pedro L.;
- Wei-Qi Wei;
- Cronin, Robert M.;
- Huan Mo;
- VanHouten, Jacob P.;
- Carroll, Robert J.;
- LaRose, Eric;
- Bastarache, Lisa A.;
- Rosenbloom, S. Trent;
- Edwards, Todd L.;
- Roden, Dan M.;
- Lasko, Thomas A.;
- Dart, Richard A.;
- Nikolai, Anne M.;
- Peissig, Peggy L.;
- Denny, Joshua C.;
- Wei, Wei-Qi;
- Mo, Huan
Publication type:
journal article
Development and evaluation of an ensemble resource linking medications to their indications.
Published in:
Journal of the American Medical Informatics Association, 2013, v. 20, n. 5, p. 954, doi. 10.1136/amiajnl-2012-001431
By:
- Wei-Qi Wei;
- Cronin, Robert M.;
- Hua Xu;
- Lasko, Thomas A.;
- Bastarache, Lisa;
- Denny, Joshua C.
Publication type:
Article
Integrating existing natural language processing tools for medication extraction from discharge summaries.
Published in:
Journal of the American Medical Informatics Association, 2010, v. 17, n. 5, p. 528, doi. 10.1136/jamia.2010.003855
By:
- Son Doan;
- Bastarache, Lisa;
- Klimkowski, Sergio;
- Denny, Joshua C.;
- Hua Xu
Publication type:
Article
Extracting timing and status descriptors for colonoscopy testing from electronic medical records.
Published in:
Journal of the American Medical Informatics Association, 2010, v. 17, n. 4, p. 383, doi. 10.1136/jamia.2010.004804
By:
- Denny, Joshua C.;
- Peterson, Josh F.;
- Choma, Neesha N.;
- Hua Xu;
- Miller, Randolph A.;
- Bastarache, Lisa;
- Peterson, Neeraja B.
Publication type:
Article
Natural Language Processing Improves Identification of Colorectal Cancer Testing in the Electronic Medical Record.
Published in:
2012
By:
- Denny, Joshua C.;
- Choma, Neesha N.;
- Peterson, Josh F.;
- Miller, Randolph A.;
- Bastarache, Lisa;
- Li, Ming;
- Peterson, Neeraja B.
Publication type:
Journal Article
Frequency of benign neutropenia among Black versus White individuals undergoing a bone marrow assessment.
Published in:
Journal of Cellular & Molecular Medicine, 2022, v. 26, n. 13, p. 3628, doi. 10.1111/jcmm.17346
By:
- Borinstein, Scott C.;
- Agamasu, David;
- Schildcrout, Jonathan S.;
- Bastarache, Lisa;
- Bagheri, Minoo;
- Davis, Lea K.;
- Roden, Dan M.;
- Michael Stein, C.;
- Van Driest, Sara L.;
- Mosley, Jonathan D.
Publication type:
Article
Prostaglandin I2 signaling licenses Treg suppressive function and prevents pathogenic reprogramming.
Published in:
2021
By:
- Norlander, Allison E.;
- Bloodworth, Melissa H.;
- Shinji Toki;
- Jian Zhang;
- Weisong Zhou;
- Boyd, Kelli L.;
- Polosukhin, Vasiliy V.;
- Cephus, Jacqueline-Yvonne;
- Ceneviva, Zachary J.;
- Gandhi, Vivek D.;
- Chowdhury, Nowrin U.;
- Charbonnier, Louis-Marie;
- Rogers, Lisa M.;
- Wang, Janey;
- Aronoff, David M.;
- Bastarache, Lisa;
- Newcomb, Dawn C.;
- Chatila, Talal A.;
- Peebles Jr., R. Stokes;
- Toki, Shinji
Publication type:
journal article
Transcription factor ETV1 is essential for rapid conduction in the heart.
Published in:
2016
By:
- Shekhar, Akshay;
- Xianming Lin;
- Fang-Yu Liu;
- Jie Zhang;
- Huan Mo;
- Bastarache, Lisa;
- Denny, Joshua C.;
- Cox, Nancy J.;
- Delmar, Mario;
- Roden, Dan M.;
- Fishman, Glenn I.;
- Park, David S.;
- Lin, Xianming;
- Liu, Fang-Yu;
- Zhang, Jie;
- Mo, Huan
Publication type:
journal article
Identifying genetically driven clinical phenotypes using linear mixed models.
Published in:
Nature Communications, 2016, v. 7, n. 4, p. 11433, doi. 10.1038/ncomms11433
By:
- Mosley, Jonathan D.;
- Witte, John S.;
- Larkin, Emma K.;
- Bastarache, Lisa;
- Shaffer, Christian M.;
- Karnes, Jason H.;
- Stein, C. Michael;
- Phillips, Elizabeth;
- Hebbring, Scott J.;
- Brilliant, Murray H.;
- Mayer, John;
- Ye, Zhan;
- Roden, Dan M.;
- Denny, Joshua C.
Publication type:
Article
Joint mouse-human phenome-wide association to test gene function and disease risk.
Published in:
Nature Communications, 2016, v. 7, n. 2, p. 10464, doi. 10.1038/ncomms10464
By:
- Wang, Xusheng;
- Pandey, Ashutosh K.;
- Mulligan, Megan K.;
- Williams, Evan G.;
- Mozhui, Khyobeni;
- Li, Zhengsheng;
- Jovaisaite, Virginija;
- Quarles, L. Darryl;
- Xiao, Zhousheng;
- Huang, Jinsong;
- Capra, John A.;
- Chen, Zugen;
- Taylor, William L.;
- Bastarache, Lisa;
- Niu, Xinnan;
- Pollard, Katherine S.;
- Ciobanu, Daniel C.;
- Reznik, Alexander O.;
- Tishkov, Artem V.;
- Zhulin, Igor B.
Publication type:
Article
Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants.
Published in:
Science Translational Medicine, 2017, v. 9, n. 389, p. 1, doi. 10.1126/scitranslmed.aai8708
By:
- Karnes, Jason H.;
- Bastarache, Lisa;
- Shaffer, Christian M.;
- Gaudieri, Silvana;
- Yaomin Xu;
- Glazer, Andrew M.;
- Mosley, Jonathan D.;
- Shilin Zhao;
- Raychaudhuri, Soumya;
- Mallal, Simon;
- Zhan Ye;
- Mayer, John G.;
- Brilliant, Murray H.;
- Hebbring, Scott J.;
- Roden, Dan M.;
- Phillips, Elizabeth J.;
- Denny, Joshua C.
Publication type:
Article
Accelerating Precision Drug Development and Drug Repurposing by Leveraging Human Genetics.
Published in:
Assay & Drug Development Technologies, 2017, v. 15, n. 3, p. 113, doi. 10.1089/adt.2016.772
By:
- Pulley, Jill M.;
- Shirey-Rice, Jana K.;
- Lavieri, Robert R.;
- Jerome, Rebecca N.;
- Zaleski, Nicole M.;
- Aronoff, David M.;
- Bastarache, Lisa;
- Niu, Xinnan;
- Holroyd, Kenneth J.;
- Roden, Dan M.;
- Skaar, Eric P.;
- Niswender, Colleen M.;
- Marnett, Lawrence J.;
- Lindsley, Craig W.;
- Ekstrom, Leeland B.;
- Bentley, Alan R.;
- Bernard, Gordon R.;
- Hong, Charles C.;
- Denny, Joshua C.
Publication type:
Article
IgG4‐related disease: Association with a rare gene variant expressed in cytotoxic T cells.
Published in:
Molecular Genetics & Genomic Medicine, 2019, v. 7, n. 6, p. N.PAG, doi. 10.1002/mgg3.686
By:
- Newman, John H.;
- Shaver, Aaron;
- Sheehan, Jonathan H.;
- Mallal, Simon;
- Stone, John H.;
- Pillai, Shiv;
- Bastarache, Lisa;
- Riebau, Derek;
- Allard‐Chamard, Hugues;
- Stone, William M.;
- Perugino, Cory;
- Pilkinton, Mark;
- Smith, Scott A.;
- McDonnell, Wyatt J.;
- Capra, John A.;
- Meiler, Jens;
- Cogan, Joy;
- Xing, Kelly;
- Mahajan, Vinay S.;
- Mattoo, Hamid
Publication type:
Article
Penetrance of Deleterious Clinical Variants.
Published in:
2022
By:
- Bastarache, Lisa;
- Peterson, Josh F.
Publication type:
Letter to the Editor

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