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alpha-Methylacyl coenzyme A racemase as a tissue biomarker for prostate cancer.
Published in:
2002
By:
- Rubin MA;
- Zhou M;
- Dhanasekaran SM;
- Varambally S;
- Barrette TR;
- Sanda MG;
- Pienta KJ;
- Ghosh D;
- Chinnaiyan AM;
- Rubin, Mark A;
- Zhou, Ming;
- Dhanasekaran, Saravana M;
- Varambally, Sooryanarayana;
- Barrette, Terrence R;
- Sanda, Martin G;
- Pienta, Kenneth J;
- Ghosh, Debashis;
- Chinnaiyan, Arul M
Publication type:
journal article
α-Methylacyl Coenzyme A Racemase as a Tissue Biomarker for Prostate Cancer.
Published in:
JAMA: Journal of the American Medical Association, 2002, v. 287, n. 13, p. 1662, doi. 10.1001/jama.287.13.1662
By:
- Rubin, Mark A.;
- Zhou, Ming;
- Dhanasekaran, Saravana M.;
- Varambally, Sooryanarayana;
- Barrette, Terrence R.;
- Sanda, Martin G.;
- Pienta, Kenneth J.;
- Ghosh, Debashis;
- Chinnaiyan, Arul M.
Publication type:
Article
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.
Published in:
Nature Biotechnology, 2011, v. 29, n. 8, p. 742, doi. 10.1038/nbt.1914
By:
- Prensner, John R;
- Iyer, Matthew K;
- Balbin, O Alejandro;
- Dhanasekaran, Saravana M;
- Cao, Qi;
- Brenner, J Chad;
- Laxman, Bharathi;
- Asangani, Irfan A;
- Grasso, Catherine S;
- Kominsky, Hal D;
- Cao, Xuhong;
- Jing, Xiaojun;
- Wang, Xiaoju;
- Siddiqui, Javed;
- Wei, John T;
- Robinson, Daniel;
- Iyer, Hari K;
- Palanisamy, Nallasivam;
- Maher, Christopher A;
- Chinnaiyan, Arul M
Publication type:
Article
An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer.
Published in:
Nature Biotechnology, 2009, v. 27, n. 11, p. 1005, doi. 10.1038/nbt.1584
By:
- Xiao-Song Wang;
- Prensner, John R.;
- Guoan Chen;
- Qi Cao;
- Bo Han;
- Dhanasekaran, Saravana M.;
- Ponnala, Rakesh;
- Xuhong Cao;
- Varambally, Sooryanarayana;
- Thomas, Dafydd G.;
- Giordano, Thomas J.;
- Beer, David G.;
- Palanisamy, Nallasivam;
- Sartor, Maureen A.;
- Omenn, Gilbert S.;
- Chinnaiyan, Arul M.
Publication type:
Article
Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma.
Published in:
Nature Medicine, 2010, v. 16, n. 7, p. 793, doi. 10.1038/nm.2166
By:
- Palanisamy, Nallasivam;
- Ateeq, Bushra;
- Kalyana-Sundaram, Shanker;
- Pflueger, Dorothee;
- Ramnarayanan, Kalpana;
- Shankar, Sunita;
- Han, Bo;
- Qi Cao;
- Xuhong Cao;
- Suleman, Khalid;
- Kumar-Sinha, Chandan;
- Dhanasekaran, Saravana M;
- Ying-bei Chen;
- Esgueva, Raquel;
- Banerjee, Samprit;
- LaFargue, Christopher J.;
- Siddiqui, Javed;
- Demichelis, Francesca;
- Moeller, Peter;
- Bismar, Tarek A.
Publication type:
Article
The landscape of long noncoding RNAs in the human transcriptome.
Published in:
Nature Genetics, 2015, v. 47, n. 3, p. 199, doi. 10.1038/ng.3192
By:
- Iyer, Matthew K;
- Chinnaiyan, Arul M;
- Niknafs, Yashar S;
- Malik, Rohit;
- Sahu, Anirban;
- Dhanasekaran, Saravana M;
- Singhal, Udit;
- Cao, Xuhong;
- Hosono, Yasuyuki;
- Barrette, Terrence R;
- Prensner, John R;
- Poliakov, Anton;
- Wu, Yi-Mi;
- Robinson, Dan R;
- Evans, Joseph R;
- Zhao, Shuang;
- Beer, David G;
- Feng, Felix Y;
- Iyer, Hariharan K
Publication type:
Article
Integrative molecular concept modeling of prostate cancer progression.
Published in:
Nature Genetics, 2007, v. 39, n. 1, p. 41, doi. 10.1038/ng1935
By:
- Tomlins, Scott A.;
- Mehra, Rohit;
- Rhodes, Daniel R.;
- Cao, Xuhong;
- Wang, Lei;
- Dhanasekaran, Saravana M.;
- Kalyana-Sundaram, Shanker;
- Wei, John T.;
- Rubin, Mark A.;
- Pienta, Kenneth J.;
- Shah, Rajal B.;
- Chinnaiyan, Arul M.
Publication type:
Article
Lessons from 801 clinical TFE3/TFEB fluorescence in situ hybridization assays performed on renal cell carcinoma suspicious for MiTF family aberrations.
Published in:
American Journal of Clinical Pathology, 2023, v. 160, n. 6, p. 549, doi. 10.1093/ajcp/aqad089
By:
- Wang, Xiao-Ming;
- Shao, Lina;
- Xiao, Hong;
- Myers, Jeffrey L;
- Pantanowitz, Liron;
- Skala, Stephanie L;
- Udager, Aaron M;
- Vaishampayan, Ulka;
- Mannan, Rahul;
- Dhanasekaran, Saravana M;
- Chinnaiyan, Arul M;
- Betz, Bryan L;
- Brown, Noah;
- Mehra, Rohit
Publication type:
Article
Tomlins et al. reply.
Published in:
Nature, 2009, v. 457, n. 7231, p. E2, doi. 10.1038/nature07739
By:
- Tomlins, Scott A.;
- Laxman, Bharathi;
- Dhanasekaran, Saravana M.;
- Helgeson, Beth E.;
- Cao, Xuhong;
- Morris, David S.;
- Menon, Anjana;
- Jing, Xiaojun;
- Cao, Qi;
- Han, Bo;
- Yu, Jindan;
- Wang, Lei;
- Montie, James E.;
- Rubin, Mark A.;
- Pienta, Kenneth J.;
- Roulston, Diane;
- Shah, Rajal B.;
- Varambally, Sooryanarayana;
- Mehra, Rohit;
- Chinnaiyan, Arul M.
Publication type:
Article
Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer.
Published in:
2007
By:
- Tomlins, Scott A.;
- Laxman, Bharathi;
- Dhanasekaran, Saravana M.;
- Helgeson, Beth E.;
- Xuhong Cao;
- Morris, David S.;
- Menon, Anjana;
- Xiaojun Jing;
- Qi Cao;
- Bo Han;
- Jindan Yu;
- Lei Wang;
- Montie, James E.;
- Rubin, Mark A.;
- Pienta, Kenneth J.;
- Roulston, Diane;
- Shah, Rajal B.;
- Varambally, Sooryanarayana;
- Mehra, Rohit;
- Chinnaiyan, Arul M.
Publication type:
Letter
Immediate early inflammatory gene responses of human umbilical vein endothelial cells to hemorrhagic venom.
Published in:
Inflammation Research, 2011, v. 60, n. 3, p. 213, doi. 10.1007/s00011-010-0286-1
By:
- Albrecht, Eric A.;
- Dhanasekaran, Saravana M.;
- Tomlins, Scott
Publication type:
Article
Clinicopathological characterisation of renal cell carcinoma in young adults: a contemporary update and review of literature.
Published in:
Histopathology, 2020, v. 76, n. 6, p. 875, doi. 10.1111/his.14051
By:
- Abdulfatah, Eman;
- Kennedy, John M;
- Hafez, Khaled;
- Davenport, Matthew S;
- Xiao, Hong;
- Weizer, Alon Z;
- Palapattu, Ganesh S;
- Morgan, Todd M;
- Mannan, Rahul;
- Wang, Xiao‐ming;
- Dhanasekaran, Saravana M;
- Kaffenberger, Samuel D;
- Spratt, Daniel E;
- Kunju, Lakshmi;
- Wu, Angela;
- Lew, Madelyn;
- Udager, Aaron M;
- Chinnaiyan, Arul M;
- Mehra, Rohit
Publication type:
Article
Transcriptome meta-analysis of lung cancer reveals recurrent aberrations in NRG1 and Hippo pathway genes.
Published in:
Nature Communications, 2014, v. 5, n. 12, p. 5893, doi. 10.1038/ncomms6893
By:
- Dhanasekaran, Saravana M.;
- Alejandro Balbin, O;
- Chen, Guoan;
- Nadal, Ernest;
- Kalyana-Sundaram, Shanker;
- Pan, Jincheng;
- Veeneman, Brendan;
- Cao, Xuhong;
- Malik, Rohit;
- Vats, Pankaj;
- Wang, Rui;
- Huang, Stephanie;
- Zhong, Jinjie;
- Jing, Xiaojun;
- Iyer, Matthew;
- Wu, Yi-Mi;
- Harms, Paul W.;
- Lin, Jules;
- Reddy, Rishindra;
- Brennan, Christine
Publication type:
Article
The central role of EED in the orchestration of polycomb group complexes.
Published in:
Nature Communications, 2014, v. 5, n. 1, p. 3127, doi. 10.1038/ncomms4127
By:
- Cao, Qi;
- Wang, Xiaoju;
- Zhao, Meng;
- Yang, Rendong;
- Malik, Rohit;
- Qiao, Yuanyuan;
- Poliakov, Anton;
- Yocum, Anastasia K.;
- Li, Yong;
- Chen, Wei;
- Cao, Xuhong;
- Jiang, Xia;
- Dahiya, Arun;
- Harris, Clair;
- Feng, Felix Y.;
- Kalantry, Sundeep;
- Qin, Zhaohui S.;
- Dhanasekaran, Saravana M.;
- Chinnaiyan, Arul M.
Publication type:
Article
Reconstructing targetable pathways in lung cancer by integrating diverse omics data.
Published in:
Nature Communications, 2013, v. 4, n. 10, p. 2617, doi. 10.1038/ncomms3617
By:
- Balbin, O. Alejandro;
- Prensner, John R.;
- Sahu, Anirban;
- Yocum, Anastasia;
- Shankar, Sunita;
- Malik, Rohit;
- Fermin, Damian;
- Dhanasekaran, Saravana M.;
- Chandler, Benjamin;
- Thomas, Dafydd;
- Beer, David G.;
- Cao, Xuhong;
- Nesvizhskii, Alexey I.;
- Chinnaiyan, Arul M.
Publication type:
Article
The polycomb group protein EZH2 is involved in progression of prostate cancer.
Published in:
Nature, 2002, v. 419, n. 6907, p. 624, doi. 10.1038/nature01075
By:
- Varambally, Sooryanarayana;
- Dhanasekaran, Saravana M.;
- Zhou, Ming;
- Barrette, Terrence R.;
- Kumar-Sinha, Chandan;
- Sanda, Martin G.;
- Ghosh, Debashis;
- Pienta, Kenneth J.;
- Sewalt, Richard G. A. B.;
- Otte, Arie P.;
- Rubin, Mark A.;
- Chinnaiyan, Arul M.
Publication type:
Article
Delineation of prognostic biomarkers in prostate cancer.
Published in:
Nature, 2001, v. 412, n. 6849, p. 822, doi. 10.1038/35090585
By:
- Dhanasekaran, Saravana M.;
- Barrette, Terrence R.;
- Ghosh, Debashis;
- Shah, Rajal;
- Varambally, Sooryanarayana;
- Kurachi, Kotoku;
- Pienta, Kenneth J.;
- Rubin, Mark A.;
- Chinnaiyan, Arul M.
Publication type:
Article
Immune associated LncRNAs identify novel prognostic subtypes of renal clear cell carcinoma.
Published in:
Molecular Carcinogenesis, 2019, v. 58, n. 4, p. 544, doi. 10.1002/mc.22949
By:
- Khadirnaikar, Seema;
- Kumar, Pranjal;
- Pandi, Sathiya N.;
- Malik, Rohit;
- Dhanasekaran, Saravana M.;
- Shukla, Sudhanshu Kumar
Publication type:
Article
The mutational landscape of lethal castration-resistant prostate cancer.
Published in:
Nature, 2012, v. 487, n. 7406, p. 239, doi. 10.1038/nature11125
By:
- Grasso, Catherine S.;
- Wu, Yi-Mi;
- Robinson, Dan R.;
- Cao, Xuhong;
- Dhanasekaran, Saravana M.;
- Khan, Amjad P.;
- Quist, Michael J.;
- Jing, Xiaojun;
- Lonigro, Robert J.;
- Brenner, J. Chad;
- Asangani, Irfan A.;
- Ateeq, Bushra;
- Chun, Sang Y.;
- Siddiqui, Javed;
- Sam, Lee;
- Anstett, Matt;
- Mehra, Rohit;
- Prensner, John R.;
- Palanisamy, Nallasivam;
- Ryslik, Gregory A.
Publication type:
Article
Leveraging artificial intelligence to predict ERG gene fusion status in prostate cancer.
Published in:
2022
By:
- Dadhania, Vipulkumar;
- Gonzalez, Daniel;
- Yousif, Mustafa;
- Cheng, Jerome;
- Morgan, Todd M.;
- Spratt, Daniel E.;
- Reichert, Zachery R.;
- Mannan, Rahul;
- Wang, Xiaoming;
- Chinnaiyan, Anya;
- Cao, Xuhong;
- Dhanasekaran, Saravana M.;
- Chinnaiyan, Arul M.;
- Pantanowitz, Liron;
- Mehra, Rohit
Publication type:
journal article
Leveraging artificial intelligence to predict ERG gene fusion status in prostate cancer.
Published in:
BMC Cancer, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12885-022-09559-4
By:
- Dadhania, Vipulkumar;
- Gonzalez, Daniel;
- Yousif, Mustafa;
- Cheng, Jerome;
- Morgan, Todd M.;
- Spratt, Daniel E.;
- Reichert, Zachery R.;
- Mannan, Rahul;
- Wang, Xiaoming;
- Chinnaiyan, Anya;
- Cao, Xuhong;
- Dhanasekaran, Saravana M.;
- Chinnaiyan, Arul M.;
- Pantanowitz, Liron;
- Mehra, Rohit
Publication type:
Article
Pathogenic ATM and BAP1 germline mutations in a case of early-onset, familial sarcomatoid renal cancer.
Published in:
Cold Spring Harbor Molecular Case Studies, 2022, v. 8, n. 3, p. 1, doi. 10.1101/mcs.a006203
By:
- Bell, Hannah N.;
- Kumar-Sinha, Chandan;
- Mannan, Rahul;
- Zakalik, Dana;
- Yuping Zhang;
- Mehra, Rohit;
- Jagtap, Deepa;
- Dhanasekaran, Saravana M.;
- Vaishampayan, Ulka
Publication type:
Article
Plasmacytoid urothelial carcinoma: a rapid autopsy case report with unique clinicopathologic and genomic profile.
Published in:
Diagnostic Pathology, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13000-019-0896-z
By:
- Simon, Caroline T.;
- Skala, Stephanie L.;
- Killen, Paul D.;
- Siddiqui, Javed;
- Cao, Xuhong;
- Qiao, Yuanyuan;
- Al-Ahmadie, Hikmat;
- Camelo-Piragua, Sandra I.;
- Jentzen, Jeffrey;
- Chinnaiyan, Arul M.;
- Dhanasekaran, Saravana M.;
- Reichert, Zachery R.;
- Mehra, Rohit
Publication type:
Article
Contemporary Renal Tumor Categorization With Biomarker and Translational Updates: A Practical Review.
Published in:
Archives of Pathology & Laboratory Medicine, 2019, v. 143, n. 12, p. 1477, doi. 10.5858/arpa.2019-0442-RA
By:
- Taylor, Alexander S.;
- Spratt, Daniel E.;
- Dhanasekaran, Saravana M.;
- Mehra, Rohit
Publication type:
Article
Hereditary Leiomyomatosis and Renal Cell Carcinoma Syndrome (HLRCC): A Contemporary Review and Practical Discussion of the Differential Diagnosis for HLRCC-Associated Renal Cell Carcinoma.
Published in:
Archives of Pathology & Laboratory Medicine, 2018, v. 142, n. 10, p. 1202, doi. 10.5858/arpa.2018-0216-RA
By:
- Skala, Stephanie L.;
- Dhanasekaran, Saravana M.;
- Mehra, Rohit
Publication type:
Article
Two-pass alignment improves novel splice junction quantification.
Published in:
Bioinformatics, 2016, v. 32, n. 1, p. 43, doi. 10.1093/bioinformatics/btv642
By:
- Veeneman, Brendan A.;
- Shukla, Sudhanshu;
- Dhanasekaran, Saravana M.;
- Chinnaiyan, Arul M.;
- Nesvizhskii, Alexey I.
Publication type:
Article
Development of a RNA-Seq Based Prognostic Signature in Lung Adenocarcinoma.
Published in:
2017
By:
- Shukla, Sudhanshu;
- Evans, Joseph R.;
- Malik, Rohit;
- Feng, Felix Y.;
- Dhanasekaran, Saravana M.;
- Xuhong Cao;
- Guoan Chen;
- Beer, David G.;
- Hui Jiang;
- Chinnaiyan, Arul M.;
- Cao, Xuhong;
- Chen, Guoan;
- Jiang, Hui
Publication type:
journal article
Evaluation of TRIM63 RNA in situ hybridization (RNA-ISH) as a potential biomarker for alveolar soft-part sarcoma (ASPS).
Published in:
Medical Oncology, 2024, v. 41, n. 3, p. 1, doi. 10.1007/s12032-024-02305-9
By:
- Taylor, Alexander S.;
- Mannan, Rahul;
- Pantanowitz, Liron;
- Chinnaiyan, Arul M.;
- Dhanasekaran, Saravana M.;
- Hrycaj, Steven;
- Cao, Xuhong;
- Chan, May P.;
- Lucas, David;
- Wang, Xiao-Ming;
- Mehra, Rohit
Publication type:
Article
Clinical and morphologic review of 60 hereditary renal tumors from 30 hereditary renal cell carcinoma syndrome patients: lessons from a contemporary single institution series.
Published in:
2019
By:
- Kennedy, John M.;
- Wang, Xiaoming;
- Plouffe, Komal R.;
- Dhanasekaran, Saravana M.;
- Hafez, Khaled;
- Palapattu, Ganesh S.;
- Else, Tobias;
- Weizer, Alon Z.;
- Morgan, Todd M.;
- Spratt, Daniel E.;
- Davenport, Matthew S.;
- Chinnaiyan, Arul M.;
- Udager, Aaron M.;
- Mehra, Rohit
Publication type:
journal article

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