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A FAIR-Based Approach to Enhancing the Discovery and Re-Use of Transcriptomic Data Assets for Nuclear Receptor Signaling Pathways.
Published in:
Data Science Journal, 2017, v. 16, p. 1, doi. 10.5334/dsj-2017-007
By:
- Ochsner, Scott A.;
- Darlington, Yolanda F.;
- McOwiti, Apollo;
- Kankanamge, Wasula H.;
- Naumov, Alexey;
- Becnel, Lauren B.;
- McKenna, Neil J.
Publication type:
Article
Combined deletion of Fxr and Shp in mice induces Cyp17a1 and results in juvenile onset cholestasis.
Published in:
2011
By:
- Anakk, Sayeepriyadarshini;
- Watanabe, Mitsuhiro;
- Ochsner, Scott A.;
- McKenna, Neil J.;
- Finegold, Milton J.;
- Moore, David D.
Publication type:
journal article
Consensus transcriptional regulatory networks of coronavirus-infected human cells.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41597-020-00628-6
By:
- Ochsner, Scott A.;
- Pillich, Rudolf T.;
- McKenna, Neil J.
Publication type:
Article
The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0193-4
By:
- Ochsner, Scott A.;
- Abraham, David;
- Martin, Kirt;
- Ding, Wei;
- McOwiti, Apollo;
- Kankanamge, Wasula;
- Wang, Zichen;
- Andreano, Kaitlyn;
- Hamilton, Ross A.;
- Chen, Yue;
- Hamilton, Angelica;
- Gantner, Marin L.;
- Dehart, Michael;
- Qu, Shijing;
- Hilsenbeck, Susan G.;
- Becnel, Lauren B.;
- Bridges, Dave;
- Ma'ayan, Avi;
- Huss, Janice M.;
- Stossi, Fabio
Publication type:
Article
Conserved immunomodulatory transcriptional networks underlie antipsychotic-induced weight gain.
Published in:
Translational Psychiatry, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41398-021-01528-y
By:
- Zapata, Rizaldy C.;
- Chaudry, Besma S.;
- Valencia, Mariela Lopez;
- Zhang, Dinghong;
- Ochsner, Scott A.;
- McKenna, Neil J.;
- Osborn, Olivia
Publication type:
Article
Discovering relationships between nuclear receptor signaling pathways, genes, and tissues in Transcriptomine.
Published in:
Science Signaling, 2017, v. 10, n. 476, p. 1, doi. 10.1126/scisignal.aah6275
By:
- Becnel, Lauren B.;
- Ochsner, Scott A.;
- Darlington, Yolanda F.;
- McOwiti, Apollo;
- Kankanamge, Wasula H.;
- Dehart, Michael;
- Naumov, Alexey;
- McKenna, Neil J.
Publication type:
Article
Transcriptional Profiling of Bipotential Embryonic Liver Cells to Identify Liver Progenitor Cell Surface Markers.
Published in:
Stem Cells, 2007, v. 25, n. 10, p. 2476, doi. 10.1634/stemcells.2007-0101
By:
- Ochsner, Scott A.;
- Strick-Marchand, Hélène;
- Qiong Qiu;
- Venable, Susan;
- Dean, Adam;
- Wilde, Margaret;
- Weiss, Mary C.;
- Darlington, Gretchen J.
Publication type:
Article
Erratum: Much room for improvement in deposition rates of expression microarray datasets.
Published in:
2009
By:
- Ochsner, Scott A;
- Steffen, David L;
- Stoeckert Jr, Christian J;
- McKenna, Neil J
Publication type:
Correction Notice
Much room for improvement in deposition rates of expression microarray datasets.
Published in:
2008
By:
- Ochsner, Scott A.;
- Steffen, David L.;
- Stoeckert Jr, Christian J.;
- McKenna, Neil J.
Publication type:
Letter
Nuclear Receptor Signaling Atlas: Opening Access to the Biology of Nuclear Receptor Signaling Pathways.
Published in:
PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0135615
By:
- Becnel, Lauren B.;
- Darlington, Yolanda F.;
- Ochsner, Scott A.;
- Easton-Marks, Jeremy R.;
- Watkins, Christopher M.;
- McOwiti, Apollo;
- Kankanamge, Wasula H.;
- Wise, Michael W.;
- DeHart, Michael;
- Margolis, Ronald N.;
- McKenna, Neil J.
Publication type:
Article
Spatial Transcriptomics Resolve an Emphysema-Specific Lymphoid Follicle B Cell Signature in Chronic Obstructive Pulmonary Disease.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2024, v. 209, n. 1, p. 48, doi. 10.1164/rccm.202303-0507LE
By:
- Rojas-Quintero, Joselyn;
- Ochsner, Scott A.;
- New, Felicia;
- Divakar, Prajan;
- Chen Xi Yang;
- Wu, Tianshi David;
- Robinson, Jerid;
- Chandrashekar, Darshan Shimoga;
- Banovich, Nicholas E.;
- Rosas, Ivan O.;
- Sauler, Maor;
- Kheradmand, Farrah;
- Gaggar, Amit;
- Margaroli, Camilla;
- Estepar, Raul San Jose;
- McKenna, Neil J.;
- Polverino, Francesca
Publication type:
Article
No Dataset Left Behind: Mechanistic Insights into Thyroid Receptor Signaling Through Transcriptomic Consensome Meta-Analysis.
Published in:
Thyroid, 2020, v. 30, n. 4, p. 621, doi. 10.1089/thy.2019.0307
By:
- Ochsner, Scott A.;
- McKenna, Neil J.
Publication type:
Article
Histone proteoform analysis reveals epigenetic changes in adult mouse brown adipose tissue in response to cold stress.
Published in:
Epigenetics & Chromatin, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13072-024-00536-8
By:
- Taylor, Bethany C.;
- Steinthal, Loic H.;
- Dias, Michelle;
- Yalamanchili, Hari Krishna;
- Ochsner, Scott A.;
- Zapata, Gladys E.;
- Mehta, Nitesh R.;
- McKenna, Neil J.;
- Young, Nicolas L.;
- Nuotio-Antar, Alli M.
Publication type:
Article
A Transcriptomic Signature of Mouse Liver Progenitor Cells.
Published in:
Stem Cells International, 2016, p. 1, doi. 10.1155/2016/5702873
By:
- Passman, Adam M.;
- Low, Jasmine;
- London, Roslyn;
- Tirnitz-Parker, Janina E. E.;
- Miyajima, Atsushi;
- Tanaka, Minoru;
- Strick-Marchand, Helene;
- Darlington, Gretchen J.;
- Finch-Edmondson, Megan;
- Ochsner, Scott;
- Zhu, Cornelia;
- Whelan, James;
- Callus, Bernard A.;
- Yeoh, George C. T.
Publication type:
Article
PIK-III exerts anti-fibrotic effects in activated fibroblasts by regulating p38 activation.
Published in:
PLoS ONE, 2024, v. 19, n. 9, p. 1, doi. 10.1371/journal.pone.0306624
By:
- Sanchez, Santiago;
- McDowell-Sanchez, Aaron K.;
- Al-Meerani, Sharaz B.;
- Cala-Garcia, Juan D.;
- Waich Cohen, Alan R.;
- Ochsner, Scott A.;
- McKenna, Neil J.;
- Celada, Lindsay J.;
- Wu, Minghua;
- Assassi, Shervin;
- Rosas, Ivan O.;
- Tsoyi, Konstantin
Publication type:
Article
Vitamin B2 enables regulation of fasting glucose availability.
Published in:
eLife, 2023, p. 1, doi. 10.7554/eLife.84077
By:
- Masschelin, Peter M.;
- Saha, Pradip;
- Ochsner, Scott A.;
- Cox, Aaron R.;
- Kang Ho Kim;
- Felix, Jessica B.;
- Sharp, Robert;
- Xin Li;
- Lin Tan;
- Jun Hyoung Park;
- Liping Wang;
- Putluri, Vasanta;
- Lorenzi, Philip L.;
- Nuotio-Antar, Alli M.;
- Zheng Sun;
- Kaipparettu, Benny Abraham;
- Putluri, Nagireddy;
- Moore, David D.;
- Summers, Scott A.;
- McKenna, Neil J.
Publication type:
Article
SHP2 promotes sarcoidosis severity by inhibiting SKP2-targeted ubiquitination of TBET in CD8<sup>+</sup> T cells.
Published in:
Science Translational Medicine, 2023, v. 15, n. 713, p. 1, doi. 10.1126/scitranslmed.ade2581
By:
- Celada, Sherly I.;
- Lim, Clarice X.;
- Carisey, Alexandre F.;
- Ochsner, Scott A.;
- Arce Deza, Carlos F.;
- Rexie, Praveen;
- Poli De Frias, Fernando;
- Cardenas-Castillo, Rafael;
- Polverino, Francesca;
- Hengstschläger, Markus;
- Tsoyi, Konstantin;
- McKenna, Neil J.;
- Kheradmand, Farrah;
- Weichhart, Thomas;
- Rosas, Ivan O.;
- Van Kaer, Luc;
- Celada, Lindsay J.
Publication type:
Article

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