OpenURL Connection Search

Select item for more details and to access through your institution.

Experimental validation that human microbiome phages use alternative genetic coding.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32979-6
By:
- Peters, Samantha L.;
- Borges, Adair L.;
- Giannone, Richard J.;
- Morowitz, Michael J.;
- Banfield, Jillian F.;
- Hettich, Robert L.
Publication type:
Article
Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31433-x
By:
- Chirania, Payal;
- Holwerda, Evert K.;
- Giannone, Richard J.;
- Liang, Xiaoyu;
- Poudel, Suresh;
- Ellis, Joseph C.;
- Bomble, Yannick J.;
- Hettich, Robert L.;
- Lynd, Lee R.
Publication type:
Article
Identifying Candidate Biomarkers of Ionizing Radiation in Human Pulmonary Microvascular Lumens Using Microfluidics—A Pilot Study.
Published in:
Micromachines, 2021, v. 12, n. 8, p. 904, doi. 10.3390/mi12080904
By:
- Millet, Larry J.;
- Giannone, Richard J.;
- Greenwood, Michael S.;
- Foster, Carmen M.;
- O'Neil, Kathleen M.;
- Braatz, Alexander D.;
- Davern, Sandra M.
Publication type:
Article
Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro.
Published in:
Environmental Microbiology Reports, 2019, v. 11, n. 4, p. 548, doi. 10.1111/1758-2229.12757
By:
- Ray, Prasun;
- Abraham, Paul E.;
- Guo, Yingqing;
- Giannone, Richard J.;
- Engle, Nancy L.;
- Yang, Zamin K.;
- Jacobson, Daniel;
- Hettich, Robert L.;
- Tschaplinski, Timothy J.;
- Craven, Kelly D.
Publication type:
Article
Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.64478
By:
- Wesener, Darryl A.;
- Beller, Zachary W.;
- Peters, Samantha L.;
- Rajabi, Amir;
- Dimartino, Gianluca;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Gordon, Jeffrey I.
Publication type:
Article
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27542-8
By:
- Van Den Bossche, Tim;
- Kunath, Benoit J.;
- Schallert, Kay;
- Schäpe, Stephanie S.;
- Abraham, Paul E.;
- Armengaud, Jean;
- Arntzen, Magnus Ø.;
- Bassignani, Ariane;
- Benndorf, Dirk;
- Fuchs, Stephan;
- Giannone, Richard J.;
- Griffin, Timothy J.;
- Hagen, Live H.;
- Halder, Rashi;
- Henry, Céline;
- Hettich, Robert L.;
- Heyer, Robert;
- Jagtap, Pratik;
- Jehmlich, Nico;
- Jensen, Marlene
Publication type:
Article
Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale.
Published in:
Nature Biotechnology, 2022, v. 40, n. 3, p. 335, doi. 10.1038/s41587-021-01195-w
By:
- Liew, Fungmin Eric;
- Nogle, Robert;
- Abdalla, Tanus;
- Rasor, Blake J.;
- Canter, Christina;
- Jensen, Rasmus O.;
- Wang, Lan;
- Strutz, Jonathan;
- Chirania, Payal;
- De Tissera, Sashini;
- Mueller, Alexander P.;
- Ruan, Zhenhua;
- Gao, Allan;
- Tran, Loan;
- Engle, Nancy L.;
- Bromley, Jason C.;
- Daniell, James;
- Conrado, Robert;
- Tschaplinski, Timothy J.;
- Giannone, Richard J.
Publication type:
Article
Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 101, doi. 10.1038/ismej.2014.112
By:
- Giannone, Richard J;
- Wurch, Louie L;
- Heimerl, Thomas;
- Martin, Stanton;
- Yang, Zamin;
- Huber, Harald;
- Rachel, Reinhard;
- Hettich, Robert L;
- Podar, Mircea
Publication type:
Article
Corrigendum: Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.
Published in:
Scientific Reports, 2017, p. 46875, doi. 10.1038/srep46875
By:
- Verbeke, Tobin J.;
- Giannone, Richard J.;
- Klingeman, Dawn M.;
- Engle, Nancy L.;
- Rydzak, Thomas;
- Guss, Adam M.;
- Tschaplinski, Timothy J.;
- Brown, Steven D.;
- Hettich, Robert L.;
- Elkins, James G.
Publication type:
Article
Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells.
Published in:
Scientific Reports, 2017, p. 43583, doi. 10.1038/srep43583
By:
- Dumitrache, Alexandru;
- Klingeman, Dawn M.;
- Natzke, Jace;
- Rodriguez Jr, Miguel;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Davison, Brian H.;
- Brown, Steven D.
Publication type:
Article
Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.
Published in:
Scientific Reports, 2017, p. 43355, doi. 10.1038/srep43355
By:
- Verbeke, Tobin J.;
- Giannone, Richard J.;
- Klingeman, Dawn M.;
- Engle, Nancy L.;
- Rydzak, Thomas;
- Guss, Adam M.;
- Tschaplinski, Timothy J.;
- Brown, Steven D.;
- Hettich, Robert L.;
- Elkins, James G.
Publication type:
Article
Proteomic Characterization of Cellular and Molecular Processes that Enable the Nanoarchaeum equitans-Ignicoccus hospitalis Relationship.
Published in:
PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022942
By:
- Giannone, Richard J.;
- Huber, Harald;
- Karpinets, Tatiana;
- Heimerl, Thomas;
- Küper, Ulf;
- Rachel, Reinhard;
- Keller, Martin;
- Hettich, Robert L.;
- Podar, Mircea
Publication type:
Article
The Protein Network Surrounding the Human Telomere Repeat Binding Factors TRF1, TRF2, and POT1.
Published in:
PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012407
By:
- Giannone, Richard J.;
- McDonald, Hayes W.;
- Hurst, Gregory B.;
- Rong-Fong Shen;
- Yisong Wang;
- Yie Liu
Publication type:
Article
Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3293-y
By:
- Wippler, Juliane;
- Kleiner, Manuel;
- Lott, Christian;
- Gruhl, Alexander;
- Abraham, Paul E.;
- Giannone, Richard J.;
- Young, Jacque C.;
- Hettich, Robert L.;
- Dubilier, Nicole
Publication type:
Article
Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis.
Published in:
Molecular Microbiology, 2019, v. 112, n. 6, p. 1784, doi. 10.1111/mmi.14393
By:
- Close, Dan M.;
- Cooper, Connor J.;
- Wang, Xingyou;
- Chirania, Payal;
- Gupta, Madhulika;
- Ossyra, John R.;
- Giannone, Richard J.;
- Engle, Nancy;
- Tschaplinski, Timothy J.;
- Smith, Jeremy C.;
- Hedstrom, Lizbeth;
- Parks, Jerry M.;
- Michener, Joshua K.
Publication type:
Article
Expression of benzoyl-CoA metabolism genes in the lignocellulolytic host Caldicellulosiruptor bescii.
Published in:
AMB Express, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13568-019-0783-8
By:
- Sander, Kyle;
- Yeary, Meredith;
- Mahan, Kristina;
- Whitham, Jason;
- Giannone, Richard J.;
- Brown, Steven D.;
- Rodriguez, Miguel;
- Graham, David E.;
- Hankoua, Bertrand
Publication type:
Article
The diversity and specificity of the extracellular proteome in the cellulolytic bacterium <italic>Caldicellulosiruptor bescii</italic> is driven by the nature of the cellulosic growth substrate.
Published in:
Biotechnology for Biofuels, 2018, v. 11, p. 1, doi. 10.1186/s13068-018-1076-1
By:
- Poudel, Suresh;
- Giannone, Richard J.;
- Basen, Mirko;
- Nookaew, Intawat;
- Poole, Farris L.;
- Kelly, Robert M.;
- Adams, Michael W. W.;
- Hettich, Robert L.
Publication type:
Article
Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria.
Published in:
Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0968-9
By:
- Eminoğlu, Ayşenur;
- Murphy, Sean Jean-Loup;
- Maloney, Marybeth;
- Lanahan, Anthony;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Tripathi, Shital A.;
- Beldüz, Ali Osman;
- Lynd, Lee R.;
- Olson, Daniel G.
Publication type:
Article
Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass.
Published in:
Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-016-0697-5
By:
- Poudel, Suresh;
- Giannone, Richard J.;
- Rodriguez Jr., Miguel;
- Raman, Babu;
- Martin, Madhavi Z.;
- Engle, Nancy L.;
- Mielenz, Jonathan R.;
- Nookaew, Intawat;
- Brown, Steven D.;
- Tschaplinski, Timothy J.;
- Ussery, David;
- Hettich, Robert L.
Publication type:
Article
Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism.
Published in:
Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-016-0684-x
By:
- Biswas, Ranjita;
- Wilson, Charlotte M.;
- Giannone, Richard J.;
- Klingeman, Dawn M.;
- Rydzak, Thomas;
- Shah, Manesh B.;
- Hettich, Robert L.;
- Brown, Steven D.;
- Guss, Adam M.
Publication type:
Article
Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum.
Published in:
Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0528-8
By:
- Liang Tian;
- Papanek, Beth;
- Olson, Daniel G.;
- Rydzak, Thomas;
- Holwerda, Evert K.;
- Tianyong Zheng;
- Jilai Zhou;
- Maloney, Marybeth;
- Jiang, Nannan;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Guss, Adam M.;
- Lynd, Lee R.
Publication type:
Article
Clostridium autoethanogenum alters cofactor synthesis, redox metabolism, and lysine-acetylation in response to elevated H<sub>2</sub>:CO feedstock ratios for enhancing carbon capture efficiency.
Published in:
Biotechnology for Biofuels & Bioproducts, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13068-024-02554-w
By:
- Davin, Megan E.;
- Thompson, R. Adam;
- Giannone, Richard J.;
- Mendelson, Lucas W.;
- Carper, Dana L.;
- Martin, Madhavi Z.;
- Martin, Michael E.;
- Engle, Nancy L.;
- Tschaplinski, Timothy J.;
- Brown, Steven D.;
- Hettich, Robert L.
Publication type:
Article
Transcriptomic and proteomic changes from medium supplementation and strain evolution in high-yielding Clostridium thermocellum strains.
Published in:
Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 11, p. 1007, doi. 10.1007/s10295-018-2073-x
By:
- Papanek, Beth;
- O’Dell, Kaela B.;
- Manga, Punita;
- Giannone, Richard J.;
- Klingeman, Dawn M.;
- Hettich, Robert L.;
- Brown, Steven D.;
- Guss, Adam M.
Publication type:
Article
Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment.
Published in:
Nature Communications, 2016, v. 7, n. 7, p. 12115, doi. 10.1038/ncomms12115
By:
- Wurch, Louie;
- Giannone, Richard J.;
- Belisle, Bernard S.;
- Swift, Carolyn;
- Utturkar, Sagar;
- Hettich, Robert L.;
- Reysenbach, Anna-Louise;
- Podar, Mircea
Publication type:
Article
The effects of micronutrient deficiencies on bacterial species from the human gut microbiota.
Published in:
Science Translational Medicine, 2017, v. 9, n. 390, p. 1, doi. 10.1126/scitranslmed.aal4069
By:
- Hibberd, Matthew C.;
- Meng Wu;
- Rodionov, Dmitry A.;
- Xiaoqing Li;
- Jiye Cheng;
- Griffin, Nicholas W.;
- Barratt, Michael J.;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Osterman, Andrei L.;
- Gordon, Jeffrey I.
Publication type:
Article
Impact of Fatty-Acid Labeling of Bacillus subtilis Membranes on the Cellular Lipidome and Proteome.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.00914
By:
- Nickels, Jonathan D.;
- Poudel, Suresh;
- Chatterjee, Sneha;
- Farmer, Abigail;
- Cordner, Destini;
- Campagna, Shawn R.;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Myles, Dean A. A.;
- Standaert, Robert F.;
- Katsaras, John;
- Elkins, James G.
Publication type:
Article
Coculture with hemicellulose-fermenting microbes reverses inhibition of corn fiber solubilization by Clostridium thermocellum at elevated solids loadings.
Published in:
Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01867-w
By:
- Beri, Dhananjay;
- Herring, Christopher D.;
- Blahova, Sofie;
- Poudel, Suresh;
- Giannone, Richard J.;
- Hettich, Robert L.;
- Lynd, Lee R.
Publication type:
Article
Identification, cloning and characterization of SpEX exotoxin produced by Staphylococcus pseudintermedius.
Published in:
PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0220301
By:
- Abouelkhair, Mohamed A.;
- Bemis, David A.;
- Giannone, Richard J.;
- Frank, Linda A.;
- Kania, Stephen A.
Publication type:
Article
Characterization of a leukocidin identified in Staphylococcus pseudintermedius.
Published in:
PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0204450
By:
- Abouelkhair, Mohamed A.;
- Bemis, David A.;
- Giannone, Richard J.;
- Frank, Linda A.;
- Kania, Stephen A.
Publication type:
Article
Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 336, doi. 10.1186/1471-2164-13-336
By:
- Shihui Yang;
- Giannone, Richard J.;
- Dice, Lezlee;
- Zamin K.Yang;
- Engle, Nancy L.;
- Tschaplinski, Timothy J.;
- Hettich, Robert L.;
- Brown, Steven D.
Publication type:
Article
Integrated Proteomics and Lipidomics Reveal That the Swarming Motility of Paenibacillus polymyxa Is Characterized by Phospholipid Modification, Surfactant Deployment, and Flagellar Specialization Relative to Swimming Motility.
Published in:
Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02594
By:
- Poudel, Suresh;
- Giannone, Richard J.;
- Farmer, Abigail T.;
- Campagna, Shawn R.;
- Bible, Amber N.;
- Morrell-Falvey, Jennifer L.;
- Elkins, James G.;
- Hettich, Robert L.
Publication type:
Article
Gene targets for engineering osmotolerance in Caldicellulosiruptor bescii.
Published in:
Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01690-3
By:
- Sander, Kyle B.;
- Chung, Daehwan;
- Klingeman, Dawn M.;
- Giannone, Richard J.;
- Rodriguez, Miguel;
- Whitham, Jason;
- Hettich, Robert L.;
- Davison, Brian H.;
- Westpheling, Janet;
- Brown, Steven D.
Publication type:
Article
Molecular basis of surface anchored protein A deficiency in the Staphylococcus aureus strain Wood 46.
Published in:
PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0183913
By:
- Balachandran, Manasi;
- Giannone, Richard J.;
- Bemis, David A.;
- Kania, Stephen A.
Publication type:
Article

Found: 33