Found: 52
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KCOSS: an ultra-fast k-mer counter for assembled genome analysis.
- Published in:
- Bioinformatics, 2022, v. 38, n. 4, p. 933, doi. 10.1093/bioinformatics/btab797
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Guide tree optimization with genetic algorithm to improve multiple protein 3D-structure alignment.
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- Bioinformatics, 2022, v. 38, n. 4, p. 985, doi. 10.1093/bioinformatics/btab798
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- Article
Idéfix: identifying accidental sample mix-ups in biobanks using polygenic scores.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1059, doi. 10.1093/bioinformatics/btab783
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- Article
Computational modeling of mRNA degradation dynamics using deep neural networks.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1087, doi. 10.1093/bioinformatics/btab800
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- Article
Scalable inference of transcriptional kinetic parameters from MS2 time series data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1030, doi. 10.1093/bioinformatics/btab765
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- Article
Uncovering complementary sets of variants for predicting quantitative phenotypes.
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- Bioinformatics, 2022, v. 38, n. 4, p. 908, doi. 10.1093/bioinformatics/btab803
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- Article
GPA-Tree: statistical approach for functional-annotation-tree-guided prioritization of GWAS results.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1067, doi. 10.1093/bioinformatics/btab802
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- Article
NetSolP: predicting protein solubility in Escherichia coli using language models.
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- Bioinformatics, 2022, v. 38, n. 4, p. 941, doi. 10.1093/bioinformatics/btab801
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- Article
Graph2MDA: a multi-modal variational graph embedding model for predicting microbe–drug associations.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1118, doi. 10.1093/bioinformatics/btab792
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- Article
TDFragMapper: a visualization tool for evaluating experimental parameters in top-down proteomics.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1136, doi. 10.1093/bioinformatics/btab784
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- Article
Peakhood: individual site context extraction for CLIP-seq peak regions.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1139, doi. 10.1093/bioinformatics/btab755
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- Article
Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1045, doi. 10.1093/bioinformatics/btab795
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- Article
Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization.
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- Bioinformatics, 2022, v. 38, n. 4, p. 977, doi. 10.1093/bioinformatics/btab794
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- Article
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1159, doi. 10.1093/bioinformatics/btab732
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- Article
GLYCO: a tool to quantify glycan shielding of glycosylated proteins.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1152, doi. 10.1093/bioinformatics/btab791
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- Article
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1162, doi. 10.1093/bioinformatics/btab789
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- Article
MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences.
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- Bioinformatics, 2022, v. 38, n. 4, p. 918, doi. 10.1093/bioinformatics/btab788
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- Article
GNN-based embedding for clustering scRNA-seq data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1037, doi. 10.1093/bioinformatics/btab787
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- Article
PIntMF: Penalized Integrative Matrix Factorization method for multi-omics data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 900, doi. 10.1093/bioinformatics/btab786
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- Article
Biobox: a toolbox for biomolecular modelling.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1149, doi. 10.1093/bioinformatics/btab785
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- Article
Plasma protein binding prediction focusing on residue-level features and circularity of cyclic peptides by deep learning.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1110, doi. 10.1093/bioinformatics/btab726
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- Article
COBREXA.jl: constraint-based reconstruction and exascale analysis.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1171, doi. 10.1093/bioinformatics/btab782
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- Article
Toward the assessment of predicted inter-residue distance.
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- Bioinformatics, 2022, v. 38, n. 4, p. 962, doi. 10.1093/bioinformatics/btab781
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- Article
minoTour, real-time monitoring and analysis for nanopore sequencers.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1133, doi. 10.1093/bioinformatics/btab780
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- Article
tcplfit2: an R-language general purpose concentration–response modeling package.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1157, doi. 10.1093/bioinformatics/btab779
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- Article
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction.
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- Bioinformatics, 2022, v. 38, n. 4, p. 990, doi. 10.1093/bioinformatics/btab777
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- Article
Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments.
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- Bioinformatics, 2022, v. 38, n. 4, p. 892, doi. 10.1093/bioinformatics/btab776
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- Article
BioCCP.jl: collecting coupons in combinatorial biotechnology.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1144, doi. 10.1093/bioinformatics/btab775
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- Article
Modeling dependency structures in 450k DNA methylation data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 885, doi. 10.1093/bioinformatics/btab774
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- Article
MoNET: an R package for multi-omic network analysis.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1165, doi. 10.1093/bioinformatics/btab722
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- Article
A2Sign: Agnostic Algorithms for Signatures—a universal method for identifying molecular signatures from transcriptomic datasets prior to cell-type deconvolution.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1015, doi. 10.1093/bioinformatics/btab773
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- Article
Deep graph representations embed network information for robust disease marker identification.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1075, doi. 10.1093/bioinformatics/btab772
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- Article
DD-GUI: a graphical user interface for deep learning-accelerated virtual screening of large chemical libraries (Deep Docking).
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- Bioinformatics, 2022, v. 38, n. 4, p. 1146, doi. 10.1093/bioinformatics/btab771
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- Article
T2-DAG: a powerful test for differentially expressed gene pathways via graph-informed structural equation modeling.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1005, doi. 10.1093/bioinformatics/btab770
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- Article
Explainable multimodal machine learning model for classifying pregnancy drug safety.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1102, doi. 10.1093/bioinformatics/btab769
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- Article
Vernal: a tool for mining fuzzy network motifs in RNA.
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- Bioinformatics, 2022, v. 38, n. 4, p. 970, doi. 10.1093/bioinformatics/btab768
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- Article
GADGETS: a genetic algorithm for detecting epistasis using nuclear families.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1052, doi. 10.1093/bioinformatics/btab766
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- Article
ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1129, doi. 10.1093/bioinformatics/btab764
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- Article
comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1022, doi. 10.1093/bioinformatics/btab763
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- Article
CSM-AB: graph-based antibody–antigen binding affinity prediction and docking scoring function.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1141, doi. 10.1093/bioinformatics/btab762
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- Article
Limits and potential of combined folding and docking.
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- Bioinformatics, 2022, v. 38, n. 4, p. 954, doi. 10.1093/bioinformatics/btab760
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- Article
Deep graph learning of inter-protein contacts.
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- Bioinformatics, 2022, v. 38, n. 4, p. 947, doi. 10.1093/bioinformatics/btab761
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- Article
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1131, doi. 10.1093/bioinformatics/btab759
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- Article
bollito: a flexible pipeline for comprehensive single-cell RNA-seq analyses.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1155, doi. 10.1093/bioinformatics/btab758
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- Article
Clustering spatial transcriptomics data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 997, doi. 10.1093/bioinformatics/btab704
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- Article
Mian: interactive web-based microbiome data table visualization and machine learning platform.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1176, doi. 10.1093/bioinformatics/btab754
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AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1173, doi. 10.1093/bioinformatics/btab750
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MatrixQCvis: shiny-based interactive data quality exploration for omics data.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1181, doi. 10.1093/bioinformatics/btab748
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power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis.
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- Bioinformatics, 2022, v. 38, n. 4, p. 925, doi. 10.1093/bioinformatics/btab747
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- Article
SigTools: exploratory visualization for genomic signals.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1126, doi. 10.1093/bioinformatics/btab742
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- Article