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- Title
POODLE-S: web application for predicting protein disorder by using physicochemical features and reduced amino acid set of a position-specific scoring matrix.
- Authors
Kana Shimizu; Shuichi Hirose; Tamotsu Noguchi
- Abstract
Summary: Protein disorder is characterized by a lack of a stable 3D structure, and is considered to be involved in a number of important protein functions such as regulatory and signalling events. We developed a web application, the POODLE-S, which predicts the disordered region from amino acid sequences by using physicochemical features and reduced amino acid set of a position-specific scoring matrix. Availability: POODLE-S is available from http://mbs.cbrc.jp/poodle/poodle-s.html and can be used by both academic and commercial users. Contact: poodle@cbrc.jp
- Subjects
PROTEIN analysis; AMINO acids; AMINO acid sequence
- Publication
Bioinformatics, 2007, Vol 23, Issue 17, p2337
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btm330