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Widefield in vivo imaging system with two fluorescence and two reflectance channels, a single sCMOS detector, and shielded illumination.
Published in:
Neurophotonics, 2024, v. 11, n. 3, p. 1, doi. 10.1117/1.NPh.11.3.034310
By:
- Doran, Patrick R.;
- Fomin-Thunemann, Natalie;
- Tang, Rockwell P.;
- Balog, Dora;
- Zimmerman, Bernhard;
- Kılıç, Kıvılcım;
- Martin, Emily A.;
- Kura, Sreekanth;
- Fisher, Harrison P.;
- Chabbott, Grace;
- Herbert, Joel;
- Rauscher, Bradley C.;
- Jiang, John X.;
- Sakadzic, Sava;
- Boas, David A.;
- Devor, Anna;
- Chen, Ichun Anderson;
- Thunemann, Martin
Publication type:
Article
Chronic Cranial Windows for Long Term Multimodal Neurovascular Imaging in Mice.
Published in:
Frontiers in Physiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fphys.2020.612678
By:
- Kılıç, Kıvılcım;
- Desjardins, Michèle;
- Tang, Jianbo;
- Thunemann, Martin;
- Sunil, Smrithi;
- Erdener, Şefik Evren;
- Postnov, Dmitry D.;
- Boas, David A.;
- Devor, Anna
Publication type:
Article
Tissue Oxygen Depth Explorer: an interactive database for microscopic oxygen imaging data.
Published in:
Frontiers in Neuroinformatics, 2023, p. 1, doi. 10.3389/fninf.2023.1278787
By:
- Amra, Layth N.;
- Mächler, Philipp;
- Fomin-Thunemann, Natalie;
- Kılıç, Kıvılcım;
- Saisan, Payam;
- Devor, Anna;
- Thunemann, Martin
Publication type:
Article
Cell type specificity of neurovascular coupling in cerebral cortex.
Published in:
eLife, 2016, p. 1, doi. 10.7554/eLife.14315
By:
- Uhlirova, Hana;
- Kılıç, Kıvılcım;
- Peifang Tian;
- Thunemann, Martin;
- Desjardins, Michèle;
- Saisan, Payam A.;
- Sakadžić, Sava;
- Ness, Torbjørn V.;
- Mateo, Celine;
- Qun Cheng;
- Weldy, Kimberly L.;
- Razoux, Florence;
- Vandenberghe, Matthieu;
- Cremonesi, Jonathan A.;
- Ferri, Christopher G. L.;
- Nizar, Krystal;
- Sridhar, Vishnu B.;
- Steed, Tyler C.;
- Abashin, Maxim;
- Fainman, Yeshaiahu
Publication type:
Article
Scalable Thousand Channel Penetrating Microneedle Arrays on Flex for Multimodal and Large Area Coverage BrainMachine Interfaces (Adv. Funct. Mater. 25/2022).
Published in:
Advanced Functional Materials, 2022, v. 32, n. 25, p. 1, doi. 10.1002/adfm.202270143
By:
- Lee, Sang Heon;
- Thunemann, Martin;
- Lee, Keundong;
- Cleary, Daniel R.;
- Tonsfeldt, Karen J.;
- Oh, Hongseok;
- Azzazy, Farid;
- Tchoe, Youngbin;
- Bourhis, Andrew M.;
- Hossain, Lorraine;
- Ro, Yun Goo;
- Tanaka, Atsunori;
- Kılıç, Kıvılcım;
- Devor, Anna;
- Dayeh, Shadi A.
Publication type:
Article
Scalable Thousand Channel Penetrating Microneedle Arrays on Flex for Multimodal and Large Area Coverage BrainMachine Interfaces.
Published in:
Advanced Functional Materials, 2022, v. 32, n. 25, p. 1, doi. 10.1002/adfm.202112045
By:
- Lee, Sang Heon;
- Thunemann, Martin;
- Lee, Keundong;
- Cleary, Daniel R.;
- Tonsfeldt, Karen J.;
- Oh, Hongseok;
- Azzazy, Farid;
- Tchoe, Youngbin;
- Bourhis, Andrew M.;
- Hossain, Lorraine;
- Ro, Yun Goo;
- Tanaka, Atsunori;
- Kılıç, Kıvılcım;
- Devor, Anna;
- Dayeh, Shadi A.
Publication type:
Article
Retinal ischemia induces α-SMA-mediated capillary pericyte contraction coincident with perivascular glycogen depletion.
Published in:
Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0761-z
By:
- Alarcon-Martinez, Luis;
- Yilmaz-Ozcan, Sinem;
- Yemisci, Muge;
- Schallek, Jesse;
- Kılıç, Kıvılcım;
- Villafranca-Baughman, Deborah;
- Can, Alp;
- Di Polo, Adriana;
- Dalkara, Turgay
Publication type:
Article
Editorial: Methods and applications in vascular physiology: 2021.
Published in:
Frontiers in Physiology, 2022, v. 13, p. 01, doi. 10.3389/fphys.2022.1078988
By:
- Brugniaux, Julien V.;
- Rodriguez-Rodriguez, Rosalia;
- Dabiri, Ali;
- Kılıç, Kıvılcım;
- Wilson, Calum;
- Goltsov, Alexey;
- Colantuoni, Antonio
Publication type:
Article
Measuring capillary flow dynamics using interlaced two-photon volumetric scanning.
Published in:
Journal of Cerebral Blood Flow & Metabolism, 2023, v. 43, n. 4, p. 595, doi. 10.1177/0271678X221145091
By:
- Giblin, John T;
- Park, Seong-Wook;
- Jiang, John;
- Kılıç, Kıvılcım;
- Kura, Sreekanth;
- Tang, Jianbo;
- Boas, David A;
- Chen, Ichun A
Publication type:
Article
Optical measurement of microvascular oxygenation and blood flow responses in awake mouse cortex during functional activation.
Published in:
Journal of Cerebral Blood Flow & Metabolism, 2022, v. 42, n. 3, p. 510, doi. 10.1177/0271678X20928011
By:
- Şencan, İkbal;
- Esipova, Tatiana;
- Kılıç, Kıvılcım;
- Li, Baoqiang;
- Desjardins, Michèle;
- Yaseen, Mohammad A;
- Wang, Hui;
- Porter, Jason E;
- Kura, Sreekanth;
- Fu, Buyin;
- Secomb, Timothy W;
- Boas, David A;
- Vinogradov, Sergei A;
- Devor, Anna;
- Sakadžić, Sava
Publication type:
Article
Dynamic capillary stalls in reperfused ischemic penumbra contribute to injury: A hyperacute role for neutrophils in persistent traffic jams.
Published in:
Journal of Cerebral Blood Flow & Metabolism, 2021, v. 41, n. 1, p. 236, doi. 10.1177/0271678X20914179
By:
- Erdener, Şefik E;
- Tang, Jianbo;
- Kılıç, Kıvılcım;
- Postnov, Dmitry;
- Giblin, John T;
- Kura, Sreekanth;
- Chen, I-chun A;
- Vayisoğlu, Tuğberk;
- Sakadžić, Sava;
- Schaffer, Chris B;
- Boas, David A
Publication type:
Article
Spatio-temporal dynamics of cerebral capillary segments with stalling red blood cells.
Published in:
Journal of Cerebral Blood Flow & Metabolism, 2019, v. 39, n. 5, p. 886, doi. 10.1177/0271678X17743877
By:
- Erdener, Şefik Evren;
- Tang, Jianbo;
- Sajjadi, Amir;
- Kılıç, Kıvılcım;
- Kura, Sreekanth;
- Schaffer, Chris B;
- Boas, David A
Publication type:
Article
Neurovascular Network Explorer 2.0: A Database of 2-Photon Single-Vessel Diameter Measurements from Mouse SI Cortex in Response To Optogenetic Stimulation.
Published in:
Frontiers in Neuroinformatics, 2017, v. 11, p. 1, doi. 10.3389/fninf.2017.00004
By:
- Uhlirova, Hana;
- Peifang Tian;
- Kılıç, Kıvılcım;
- Thunemann, Martin;
- Sridhar, Vishnu B.;
- Bartsch, Hauke;
- Dale, Anders M.;
- Devor, Anna;
- Saisan, Payam A.
Publication type:
Article
Baseline oxygen consumption decreases with cortical depth.
Published in:
PLoS Biology, 2022, v. 20, n. 10, p. 1, doi. 10.1371/journal.pbio.3001440
By:
- Mächler, Philipp;
- Fomin-Thunemann, Natalie;
- Thunemann, Martin;
- Sætra, Marte Julie;
- Desjardins, Michèle;
- Kılıç, Kıvılcım;
- Amra, Layth N.;
- Martin, Emily A.;
- Chen, Ichun Anderson;
- Şencan-Eğilmez, Ikbal;
- Li, Baoqiang;
- Saisan, Payam;
- Jiang, John X.;
- Cheng, Qun;
- Weldy, Kimberly L.;
- Boas, David A.;
- Buxton, Richard B.;
- Einevoll, Gaute T.;
- Dale, Anders M.;
- Sakadžić, Sava
Publication type:
Article
Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters.
Published in:
Neurophotonics, 2020, v. 7, n. 4, p. 45005, doi. 10.1117/1.NPh.7.4.045005
By:
- Yang, Jiarui;
- Chen, Ichun Anderson;
- Chang, Shuaibin;
- Tang, Jianbo;
- Lee, Blaire;
- Kılıç, Kıvılcım;
- Sunil, Smrithi;
- Wang, Hui;
- Varadarajan, Divya;
- Magnain, Caroline;
- Chen, Shih-Chi;
- Costantini, Irene;
- Pavone, Francesco;
- Fischl, Bruce;
- Boas, David A.
Publication type:
Article
Awake chronic mouse model of targeted pial vessel occlusion via photothrombosis.
Published in:
Neurophotonics, 2020, v. 7, n. 1, p. 15005, doi. 10.1117/1.NPh.7.1.015005
By:
- Sunil, Smrithi;
- Erdener, Sefik Evren;
- Lee, Blaire S.;
- Postnov, Dmitry;
- Tang, Jianbo;
- Kura, Sreekanth;
- Cheng, Xiaojun;
- Chen, Ichun Anderson;
- Boas, David A.;
- Kılıç, Kıvılcım
Publication type:
Article
Deep 2-photon imaging and artifact-free optogenetics through transparent graphene microelectrode arrays.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04457-5
By:
- Thunemann, Martin;
- Yichen Lu;
- Xin Liu;
- Kılıç, Kıvılcım;
- Desjardins, Michèle;
- Vandenberghe, Matthieu;
- Sadegh, Sanaz;
- Saisan, Payam A.;
- Qun Cheng;
- Weldy, Kimberly L.;
- Hongming Lyu;
- Djurovic, Srdjan;
- Andreassen, Ole A.;
- Dale, Anders M.;
- Devor, Anna;
- Kuzum, Duygu
Publication type:
Article
How Does Fasting Trigger Migraine? A Hypothesis.
Published in:
Current Pain & Headache Reports, 2013, v. 17, n. 10, p. 1, doi. 10.1007/s11916-013-0368-1
By:
- Dalkara, Turgay;
- Kılıç, Kıvılcım
Publication type:
Article
Correlation Structure in Micro-ECoG Recordings is Described by Spatially Coherent Components.
Published in:
PLoS Computational Biology, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006769
By:
- Rogers, Nicholas;
- Hermiz, John;
- Ganji, Mehran;
- Kaestner, Erik;
- Kılıç, Kıvılcım;
- Hossain, Lorraine;
- Thunemann, Martin;
- Cleary, Daniel R.;
- Carter, Bob S.;
- Barba, David;
- Devor, Anna;
- Halgren, Eric;
- Dayeh, Shadi A.;
- Gilja, Vikash
Publication type:
Article

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