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- Title
Cross-Chip Probe Matching Tool: A Web-Based Tool for Linking Microarray Probes within and across Plant Species.
- Authors
Ghanekar, Ruchi; Srinivasasainagendra, Vinodh; Page, Grier P.
- Abstract
The CCPMT is a free, web-based tool that allows plant investigators to rapidly determine if a given gene is present across various microarray platforms, which, of a list of genes, is present on array(s), and which gene a probe or probe set queries and vice versa, and to compare and contrast the gene contents of arrays. The CCPMT also maps a probe or probe sets to a gene or genes within and across species, and permits the mapping of the entire content from one array to another. By using the CCPMT, investigators will have a better understanding of the contents of arrays, a better ability to link data between experiments, ability to conduct meta-analysis and combine datasets, and an increased ability to conduct data mining projects.
- Subjects
BIOINFORMATICS software; COMPUTERS in biology; GENOMICS; DATA mining; META-analysis; GENES; GENE mapping
- Publication
International Journal of Plant Genomics, 2008, Vol 2008, p1
- ISSN
1687-5370
- Publication type
Article
- DOI
10.1155/2008/451327