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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.
Published in:
Genetics, 2019, v. 211, n. 1, p. 317, doi. 10.1534/genetics.118.301589
By:
- Wilson, Pip B.;
- Streich, Jared C.;
- Murray, Kevin D.;
- Eichten, Steve R.;
- Riyan Cheng;
- Aitken, Nicola C.;
- Spokas, Kurt;
- Warthmann, Norman;
- Gordon, Sean P.;
- Vogel, John P.;
- Borevitz, Justin O.
Publication type:
Article
Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of theMediterranean Grass Brachypodium distachyon.
Published in:
Genome Biology & Evolution, 2018, v. 10, n. 1, p. 304, doi. 10.1093/gbe/evx276
By:
- Stritt, Christoph;
- Gordon, Sean P.;
- Wicker, Thomas;
- Vogel, John P.;
- Roulin, Anne C.
Publication type:
Article
Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.
Published in:
PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167171
By:
- Dinh Thi, Vinh Ha;
- Coriton, Olivier;
- Le Clainche, Isabelle;
- Arnaud, Dominique;
- Gordon, Sean P.;
- Linc, Gabriella;
- Catalan, Pilar;
- Hasterok, Robert;
- Vogel, John P.;
- Jahier, Joseph;
- Chalhoub, Boulos
Publication type:
Article
Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.
Published in:
Plant Physiology, 2017, v. 173, n. 1, p. 269, doi. 10.1104/pp.16.01178
By:
- Woods, Daniel P.;
- Bednarek, Ryland;
- Bouché, Frédéric;
- Gordon, Sean P.;
- Vogel, John P.;
- Garvin, David F.;
- Amasino, Richard M.
Publication type:
Article
A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem.
Published in:
eLife, 2016, p. 1, doi. 10.7554/eLife.20522
By:
- Rabe, Franziska;
- Bosch, Jason;
- Stirnberg, Alexandra;
- Guse, Tilo;
- Bauer, Lisa;
- Seitner, Denise;
- Rabanal, Fernando A.;
- Czedik-Eysenberg, Angelika;
- Uhse, Simon;
- Bindics, Janos;
- Genenncher, Bianca;
- Navarrete, Fernando;
- Kellner, Ronny;
- Ekker, Heinz;
- Kumlehn, Jochen;
- Vogel, John P.;
- Gordon, Sean P.;
- Marcel, Thierry C.;
- Münsterkötter, Martin;
- Walter, Mathias C.
Publication type:
Article
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17302-5
By:
- Gordon, Sean P.;
- Contreras-Moreira, Bruno;
- Levy, Joshua J.;
- Djamei, Armin;
- Czedik-Eysenberg, Angelika;
- Tartaglio, Virginia S.;
- Session, Adam;
- Martin, Joel;
- Cartwright, Amy;
- Katz, Andrew;
- Singan, Vasanth R.;
- Goltsman, Eugene;
- Barry, Kerrie;
- Dinh-Thi, Vinh Ha;
- Chalhoub, Boulos;
- Diaz-Perez, Antonio;
- Sancho, Ruben;
- Lusinska, Joanna;
- Wolny, Elzbieta;
- Nibau, Candida
Publication type:
Article
PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5828-5
By:
- Gordon, Sean P.;
- Levy, Joshua J.;
- Vogel, John P.
Publication type:
Article
Unravelling developmental dynamics: transient intervention and live imaging in plants.
Published in:
Nature Reviews Molecular Cell Biology, 2007, v. 8, n. 6, p. 491, doi. 10.1038/nrm2188
By:
- Reddy, G. Venugopala;
- Gordon, Sean P.;
- Meyerowitz, Elliot M.
Publication type:
Article
RDH1 suppresses adiposity by promoting brown adipose adaptation to fasting and re-feeding.
Published in:
Cellular & Molecular Life Sciences, 2019, v. 76, n. 12, p. 2425, doi. 10.1007/s00018-019-03046-z
By:
- Krois, Charles R.;
- Vuckovic, Marta G.;
- Huang, Priscilla;
- Zaversnik, Claire;
- Liu, Conan S.;
- Gibson, Candice E.;
- Wheeler, Madelyn R.;
- Obrochta, Kristin M.;
- Min, Jin H.;
- Herber, Candice B.;
- Thompson, Airlia C.;
- Shah, Ishan D.;
- Gordon, Sean P.;
- Hellerstein, Marc K.;
- Napoli, Joseph L.
Publication type:
Article
Comparative plastome genomics and phylogenomics of <italic>Brachypodium</italic>: flowering time signatures, introgression and recombination in recently diverged ecotypes.
Published in:
2018
By:
- Sancho, Rubén;
- Cantalapiedra, Carlos P.;
- López‐Alvarez, Diana;
- Gordon, Sean P.;
- Vogel, John P.;
- Catalán, Pilar;
- Contreras‐Moreira, Bruno
Publication type:
Abstract
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02292-8
By:
- Gordon, Sean P.;
- Shengqiang Shu;
- Schackwitz, Wendy;
- Martin, Joel;
- Lipzen, Anna;
- Phillips, Jeremy;
- Barry, Kerrie;
- Davidson, Patrick;
- Vogel, John P.;
- Stritt, Christoph;
- Roulin, Anne C.;
- Tyler, Ludmila;
- Caicedo, Ana L.;
- Dochy, Niklas;
- Geuten, Koen;
- Budak, Hikmet;
- Juengera, Thomas E.;
- Mur, Luis A. J.;
- Figueroa, Melania;
- Contreras-Moreira, Bruno
Publication type:
Article
Generation and Characterization of the Western Regional Research Center Brachypodium T-DNA Insertional Mutant Collection.
Published in:
PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0041916
By:
- Bragg, Jennifer N.;
- Jiajie Wu;
- Gordon, Sean P.;
- Guttman, Mara E.;
- Thilmony, Roger;
- Lazo, Gerard R.;
- Gu, Yong Q.;
- Vogel, John P.;
- Hazen, Samuel P.
Publication type:
Article
Sequencing and functional validation of the JGI Brachypodium distachyon T- DNA collection.
Published in:
Plant Journal, 2017, v. 91, n. 3, p. 361, doi. 10.1111/tpj.13582
By:
- Hsia, Mon Mandy;
- O'Malley, Ronan;
- Cartwright, Amy;
- Nieu, Rita;
- Gordon, Sean P.;
- Kelly, Sandra;
- Williams, Tina G.;
- Wood, Delilah F.;
- Zhao, Yunjun;
- Bragg, Jennifer;
- Jordan, Mark;
- Pauly, Markus;
- Ecker, Joseph R.;
- Gu, Yong;
- Vogel, John P.
Publication type:
Article
Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.
Published in:
Plant Journal, 2014, v. 79, n. 3, p. 361, doi. 10.1111/tpj.12569
By:
- Gordon, Sean P.;
- Priest, Henry;
- Des Marais, David L.;
- Schackwitz, Wendy;
- Figueroa, Melania;
- Martin, Joel;
- Bragg, Jennifer N.;
- Tyler, Ludmila;
- Lee, Cheng‐Ruei;
- Bryant, Doug;
- Wang, Wenqin;
- Messing, Joachim;
- Manzaneda, Antonio J.;
- Barry, Kerrie;
- Garvin, David F.;
- Budak, Hikmet;
- Tuna, Metin;
- Mitchell‐Olds, Thomas;
- Pfender, William F.;
- Juenger, Thomas E.
Publication type:
Article
Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon.
Published in:
Plant Journal, 2018, v. 96, n. 2, p. 438, doi. 10.1111/tpj.14042
By:
- Bourgeois, Yann;
- Stritt, Christoph;
- Walser, Jean‐Claude;
- Gordon, Sean P.;
- Vogel, John P.;
- Roulin, Anne C.
Publication type:
Article
The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 1, p. 1, doi. 10.1093/g3journal/jkad245
By:
- Lei, Li;
- Gordon, Sean P;
- Liu, Lifeng;
- Sade, Nir;
- Lovell, John T;
- Wilhelmi, Maria Del Mar Rubio;
- Singan, Vasanth;
- Sreedasyam, Avinash;
- Hestrin, Rachel;
- Phillips, Jeremy;
- Hernandez, Bryan T;
- Barry, Kerrie;
- Shu, Shengqiang;
- Jenkins, Jerry;
- Schmutz, Jeremy;
- Goodstein, David M;
- Thilmony, Roger;
- Blumwald, Eduardo;
- Vogel, John P
Publication type:
Article
Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
Published in:
Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00184
By:
- Contreras-Moreira, Bruno;
- Cantalapiedra, Carlos P.;
- García-Pereira, María J.;
- Gordon, Sean P.;
- Vogel, John P.;
- Igartua, Ernesto;
- Casas, Ana M.;
- Vinuesa, Pablo
Publication type:
Article
Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat.
Published in:
Frontiers in Plant Science, 2021, v. 12, p. N.PAG, doi. 10.3389/fpls.2021.657796
By:
- Henningsen, Eva C.;
- Omidvar, Vahid;
- Della Coletta, Rafael;
- Michno, Jean-Michel;
- Gilbert, Erin;
- Li, Feng;
- Miller, Marisa E.;
- Myers, Chad L.;
- Gordon, Sean P.;
- Vogel, John P.;
- Steffenson, Brian J.;
- Kianian, Shahryar F.;
- Hirsch, Cory D.;
- Figueroa, Melania
Publication type:
Article
The genomic landscape of molecular responses to natural drought stress in Panicum hallii.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07669-x
By:
- Lovell, John T.;
- Jenkins, Jerry;
- Lowry, David B.;
- Mamidi, Sujan;
- Sreedasyam, Avinash;
- Weng, Xiaoyu;
- Barry, Kerrie;
- Bonnette, Jason;
- Campitelli, Brandon;
- Daum, Chris;
- Gordon, Sean P.;
- Gould, Billie A.;
- Khasanova, Albina;
- Lipzen, Anna;
- MacQueen, Alice;
- Palacio-Mejía, Juan Diego;
- Plott, Christopher;
- Shakirov, Eugene V.;
- Shu, Shengqiang;
- Yoshinaga, Yuko
Publication type:
Article
Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.
Published in:
PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0132628
By:
- Gordon, Sean P.;
- Tseng, Elizabeth;
- Salamov, Asaf;
- Zhang, Jiwei;
- Meng, Xiandong;
- Zhao, Zhiying;
- Kang, Dongwan;
- Underwood, Jason;
- Grigoriev, Igor V.;
- Figueroa, Melania;
- Schilling, Jonathan S.;
- Chen, Feng;
- Wang, Zhong
Publication type:
Article

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