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An Integrated Pipeline of Open Source Software Adapted for Multi-CPU Architectures: Use in the Large-Scale Identification of Single Nucleotide Polymorphisms.
Published in:
Comparative & Functional Genomics, 2007, p. 1, doi. 10.1155/2007/35604
By:
- Jayashree, B.;
- Hanspal, Manindra S.;
- Srinivasan, Rajgopal;
- Vigneshwaran, R.;
- Varshney, Rajeev K.;
- Spurthi, N.;
- Eshwar, K.;
- Ramesh, N.;
- Chandra, S.;
- Hoisington, David A.
Publication type:
Article
Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications.
Published in:
Plant Biotechnology Journal, 2020, v. 18, n. 11, p. 2187, doi. 10.1111/pbi.13374
By:
- Sinha, Pallavi;
- Bajaj, Prasad;
- Pazhamala, Lekha T.;
- Nayak, Spurthi N.;
- Pandey, Manish K.;
- Chitikineni, Annapurna;
- Huai, Dongxin;
- Khan, Aamir W.;
- Desai, Aarthi;
- Jiang, Huifang;
- Zhuang, Weijian;
- Guo, Baozhu;
- Liao, Boshou;
- Varshney, Rajeev K.
Publication type:
Article
Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression.
Published in:
Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02048
By:
- Fountain, Jake C.;
- Bajaj, Prasad;
- Nayak, Spurthi N.;
- Liming Yang;
- Pandey, Manish K.;
- Kumar, Vinay;
- Jayale, Ashwin S.;
- Chitikineni, Anu;
- Lee, Robert D.;
- Kemerait, Robert C.;
- Varshney, Rajeev K.;
- Baozhu Guo
Publication type:
Article
Comparative Transcriptome Analysis Identified Candidate Genes for Late Leaf Spot Resistance and Cause of Defoliation in Groundnut.
Published in:
International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4491, doi. 10.3390/ijms22094491
By:
- Gangurde, Sunil S.;
- Nayak, Spurthi N.;
- Joshi, Pushpesh;
- Purohit, Shilp;
- Sudini, Hari K.;
- Chitikineni, Annapurna;
- Hong, Yanbin;
- Guo, Baozhu;
- Chen, Xiaoping;
- Pandey, Manish K.;
- Varshney, Rajeev K.;
- Maghuly, Fatemeh;
- Sehr, Eva M.;
- Saxena, Rachit;
- Konkin, David J.
Publication type:
Article
Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.
Published in:
Scientific Reports, 2017, p. 40577, doi. 10.1038/srep40577
By:
- Pandey, Manish K.;
- Agarwal, Gaurav;
- Kale, Sandip M.;
- Clevenger, Josh;
- Nayak, Spurthi N.;
- Sriswathi, Manda;
- Chitikineni, Annapurna;
- Chavarro, Carolina;
- Chen, Xiaoping;
- Upadhyaya, Hari D.;
- Vishwakarma, Manish K.;
- Leal-Bertioli, Soraya;
- Liang, Xuanqiang;
- Bertioli, David J.;
- Guo, Baozhu;
- Jackson, Scott A.;
- Ozias-Akins, Peggy;
- Varshney, Rajeev K.
Publication type:
Article
Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production.
Published in:
Scientific Reports, 2016, p. 38747, doi. 10.1038/srep38747
By:
- Fountain, Jake C.;
- Bajaj, Prasad;
- Pandey, Manish;
- Nayak, Spurthi N.;
- Yang, Liming;
- Kumar, Vinay;
- Jayale, Ashwin S.;
- Chitikineni, Anu;
- Zhuang, Weijian;
- Scully, Brian T.;
- Lee, R. Dewey;
- Kemerait, Robert C.;
- Varshney, Rajeev K.;
- Guo, Baozhu
Publication type:
Article
Promoting Utilization of Saccharum spp. Genetic Resources through Genetic Diversity Analysis and Core Collection Construction.
Published in:
PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0110856
By:
- Nayak, Spurthi N.;
- Song, Jian;
- Villa, Andrea;
- Pathak, Bhuvan;
- Ayala-Silva, Tomas;
- Yang, Xiping;
- Todd, James;
- Glynn, Neil C.;
- Kuhn, David N.;
- Glaz, Barry;
- Gilbert, Robert A.;
- Comstock, Jack C.;
- Wang, Jianping
Publication type:
Article
Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096758
By:
- Thudi, Mahendar;
- Upadhyaya, Hari D.;
- Rathore, Abhishek;
- Gaur, Pooran Mal;
- Krishnamurthy, Lakshmanan;
- Roorkiwal, Manish;
- Nayak, Spurthi N.;
- Chaturvedi, Sushil Kumar;
- Basu, Partha Sarathi;
- Gangarao, N. V. P. R.;
- Fikre, Asnake;
- Kimurto, Paul;
- Sharma, Prakash C.;
- Sheshashayee, M. S.;
- Tobita, Satoshi;
- Kashiwagi, Junichi;
- Ito, Osamu;
- Killian, Andrzej;
- Varshney, Rajeev Kumar
Publication type:
Article
Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.).
Published in:
PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027275
By:
- Thudi, Mahendar;
- Bohra, Abhishek;
- Nayak, Spurthi N.;
- Varghese, Nicy;
- Shah, Trushar M.;
- Penmetsa, R. Varma;
- Thirunavukkarasu, Nepolean;
- Gudipati, Srivani;
- Gaur, Pooran M.;
- Kulwal, Pawan L.;
- Upadhyaya, Hari D.;
- KaviKishor, Polavarapu B.;
- Winter, Peter;
- Kahl, Günter;
- Town, Christopher D.;
- Kilian, Andrzej;
- Cook, Douglas R.;
- Varshney, Rajeev K.
Publication type:
Article
Characterization of early maturing elite genotypes based on MTSI and MGIDI indexes: an illustration in upland cotton (Gossypium hirsutum L.).
Published in:
Journal of Cotton Research, 2024, v. 7, n. 1, p. 1, doi. 10.1186/s42397-024-00187-w
By:
- D S Raj, Supritha;
- Patil, Rajesh S.;
- Patil, Bhuvaneshwara R.;
- Nayak, Spurthi N.;
- Pawar, Kasu N.
Publication type:
Article
Temperature‐smart plants: A new horizon with omics‐driven plant breeding.
Published in:
Physiologia Plantarum, 2024, v. 176, n. 1, p. 1, doi. 10.1111/ppl.14188
By:
- Raza, Ali;
- Bashir, Shanza;
- Khare, Tushar;
- Karikari, Benjamin;
- Copeland, Rhys G. R.;
- Jamla, Monica;
- Abbas, Saghir;
- Charagh, Sidra;
- Nayak, Spurthi N.;
- Djalovic, Ivica;
- Rivero, Rosa M.;
- Siddique, Kadambot H. M.;
- Varshney, Rajeev K.
Publication type:
Article
Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-60187-z
By:
- Bhogireddy, Sailaja;
- Xavier, Abishek;
- Garg, Vanika;
- Layland, Nancy;
- Arias, Renee;
- Payton, Paxton;
- Nayak, Spurthi N.;
- Pandey, Manish K.;
- Puppala, Naveen;
- Varshney, Rajeev K.
Publication type:
Article
Identification of genes controlling compatible and incompatible reactions of pearl millet (Pennisetum glaucum) against blast (Magnaporthe grisea) pathogen through RNA-Seq.
Published in:
Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.981295
By:
- Shweta Singh;
- Sharma, Rajan;
- Nepolean, Thirunavukkarasu;
- Nayak, Spurthi N.;
- Pushpavathi, Bheemavarapu;
- Khan, Aamir W.;
- Srivastava, Rakesh K.;
- Varshney, Rajeev K.
Publication type:
Article
Genetic mapping identified three hotspot genomic regions and candidate genes controlling heat tolerance-related traits in groundnut.
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1182867
By:
- Sharma, Vinay;
- Gangurde, Sunil S.;
- Nayak, Spurthi N.;
- Gowda, Anjan S.;
- Sukanth, B. S.;
- Mahadevaiah, Supriya S.;
- Manohar, Surendra S.;
- Choudhary, Rakeshkumar S.;
- Anitha, T.;
- Malavalli, Sachin S.;
- Srikanth, S. N.;
- Bajaj, Prasad;
- Sharma, Shailendra;
- Varshney, Rajeev K.;
- Latha, Putta;
- Janila, Pasupuleti;
- Bhat, Ramesh S.;
- Pandey, Manish K.
Publication type:
Article
Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops.
Published in:
Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00488
By:
- Garg, Vanika;
- Agarwa, Gaurav;
- Pazhamala, Lekha T.;
- Nayak, Spurthi N.;
- Kudapa, Himabindu;
- Khan, Aamir W.;
- Doddamani, Dadakhalandar;
- Sharma, Mamta;
- Kishor, P. B. Kavi;
- Varshney, Rajeev K.
Publication type:
Article
Correction to: Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.).
Published in:
2018
By:
- Khedikar, Yogendra;
- Pandey, Manish K.;
- Sujay, V.;
- Singh, Sube;
- Nayak, Spurthi N.;
- Klein-Gebbinck, Henry W.;
- Sarvamangala, Cholin;
- Mukri, Ganapati;
- Garg, Vanika;
- Upadhyaya, Hari D.;
- Nadaf, H. L.;
- Gowda, M. V. C.;
- Varshney, Rajeev K.;
- Bhat, Ramesh S.
Publication type:
Correction Notice
Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut ( Arachis hypogaea L.).
Published in:
Molecular Breeding, 2018, v. 38, n. 1, p. 1, doi. 10.1007/s11032-017-0764-z
By:
- Khedikar, Yogendra;
- Pandey, Manish K.;
- Sujay, V.;
- Singh, Sube;
- Nayak, Spurthi N.;
- Klein-Gebbinck, Henry W.;
- Sarvamangala, Cholin;
- Mukri, Ganapati;
- Garg, Vanika;
- Upadhyaya, Hari D.;
- Nadaf, H. L.;
- Gowda, M. V. C.;
- Varshney, Rajeev K.;
- Bhat, Ramesh S.
Publication type:
Article
Omics Technologies to Enhance Plant Based Functional Foods: An Overview.
Published in:
Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.742095
By:
- Nayak, Spurthi N.;
- Aravind, B.;
- Malavalli, Sachin S.;
- Sukanth, B. S.;
- Poornima, R.;
- Bharati, Pushpa;
- Hefferon, Kathleen;
- Kole, Chittaranjan;
- Puppala, Naveen
Publication type:
Article
Genetic mapping of drought tolerance traits phenotyped under varying drought stress environments in peanut (Arachis hypogaea L.).
Published in:
Euphytica, 2022, v. 218, n. 12, p. 1, doi. 10.1007/s10681-022-03120-x
By:
- Ghosh, Subhasini;
- Mahadevaiah, Supriya S.;
- Gowda, S. Anjan;
- Gangurde, Sunil S.;
- Jadhav, Mangesh P.;
- Hake, Anil A.;
- Latha, P.;
- Anitha, T.;
- Chimmad, V. P.;
- Mirajkar, Kiran K.;
- Sharma, Vinay;
- Pandey, Manish K.;
- Shirasawa, Kenta;
- Nayak, Spurthi N.;
- Varshney, Rajeev K.;
- Bhat, Ramesh S.
Publication type:
Article
Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut.
Published in:
Journal of Fungi, 2021, v. 7, n. 6, p. 1, doi. 10.3390/jof7060413
By:
- Soni, Pooja;
- Pandey, Arun K.;
- Nayak, Spurthi N.;
- Pandey, Manish K.;
- Tolani, Priya;
- Pandey, Sarita;
- Sudini, Hari K.;
- Bajaj, Prasad;
- Fountain, Jake C.;
- Singam, Prashant;
- Guo, Baozhu;
- Varshney, Rajeev K.
Publication type:
Article
Transcriptome Analysis Identified Coordinated Control of Key Pathways Regulating Cellular Physiology and Metabolism upon Aspergillus flavus Infection Resulting in Reduced Aflatoxin Production in Groundnut.
Published in:
Journal of Fungi, 2020, v. 6, n. 4, p. 1, doi. 10.3390/jof6040370
By:
- Soni, Pooja;
- Nayak, Spurthi N.;
- Kumar, Rakesh;
- Pandey, Manish K.;
- Singh, Namita;
- Sudini, Hari K.;
- Bajaj, Prasad;
- Fountain, Jake C.;
- Singam, Prashant;
- Yanbin Hong;
- Xiaoping Chen;
- Weijian Zhuang;
- Boshou Liao;
- Baozhu Guo;
- Varshney, Rajeev K.
Publication type:
Article
Sustaining yield and nutritional quality of peanuts in harsh environments: Physiological and molecular basis of drought and heat stress tolerance.
Published in:
Frontiers in Genetics, 2023, v. 14, p. 1, doi. 10.3389/fgene.2023.1121462
By:
- Puppala, Naveen;
- Nayak, Spurthi N.;
- Sanz-Saez, Alvaro;
- Chen, Charles;
- Devi, Mura Jyostna;
- Nivedita, Nivedita;
- Yin Bao;
- Guohao He;
- Traore, Sy M.;
- Wright, David A.;
- Pandey, Manish K.;
- Sharma, Vinay
Publication type:
Article
Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers.
Published in:
Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00248
By:
- Roorkiwal, Manish;
- Nayak, Spurthi N.;
- Thudi, Mahendar;
- Upadhyaya, Hari D.;
- Brunel, Dominique;
- Mournet, Pierre;
- This, Dominique;
- Sharma, Prakash C.;
- Varshney, Rajeev K.
Publication type:
Article
Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers.
Published in:
Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00248
By:
- Roorkiwal, Manish;
- Nayak, Spurthi N.;
- Thudi, Mahendar;
- Upadhyaya, Hari D.;
- Brunel, Dominique;
- Mournet, Pierre;
- This, Dominique;
- Sharma, Prakash C.;
- Varshney, Rajeev K.
Publication type:
Article
Mapping of important taxonomic and productivity traits using genic and non-genic transposable element markers in peanut (Arachis hypogaea L.).
Published in:
PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0186113
By:
- Hake, Anil A.;
- Shirasawa, Kenta;
- Yadawad, Arati;
- Sukruth, M.;
- Patil, Malagouda;
- Nayak, Spurthi N.;
- Lingaraju, S.;
- Patil, P. V.;
- Nadaf, H. L.;
- Gowda, M. V. C.;
- Bhat, R. S.
Publication type:
Article
Correction: Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches.
Published in:
2017
By:
- Thudi, Mahendar;
- Upadhyaya, Hari D.;
- Rathore, Abhishek;
- Gaur, Pooran Mal;
- Krishnamurthy, Lakshmanan;
- Roorkiwal, Manish;
- Nayak, Spurthi N.;
- Chaturvedi, Sushil Kumar;
- Basu, Partha Sarathi;
- Gangarao, N. V. P. R.;
- Fikre, Asnake;
- Kimurto, Paul;
- Sharma, Prakash C.;
- Sheshashayee, M. S.;
- Tobita, Satoshi;
- Kashiwagi, Junichi;
- Ito, Osamu;
- Killian, Andrzej;
- Varshne, Rajeev Kumar
Publication type:
Correction Notice

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