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Examining the Process of de Novo Gene Birth: An Educational Primer on "Integration of New Genes into Cellular Networks, and Their Structural Maturation".
Published in:
Genetics, 2014, v. 196, n. 3, p. 593, doi. 10.1534/genetics.113.160895
By:
- Frietze, Seth;
- Leatherman, Judith
Publication type:
Article
Stromal cell protein kinase C-β inhibition enhances chemosensitivity in B cell malignancies and overcomes drug resistance.
Published in:
Science Translational Medicine, 2020, v. 12, n. 526, p. 1, doi. 10.1126/scitranslmed.aax9340
By:
- Park, Eugene;
- Chen, Jingyu;
- Moore, Andrew;
- Mangolini, Maurizio;
- Santoro, Antonella;
- Boyd, Joseph R.;
- Schjerven, Hilde;
- Ecker, Veronika;
- Buchner, Maike;
- Williamson, James C.;
- Lehner, Paul J.;
- Gasparoli, Luca;
- Williams, Owen;
- Bloehdorn, Johannes;
- Stilgenbauer, Stephan;
- Leitges, Michael;
- Egle, Alexander;
- Schmidt-Supprian, Marc;
- Frietze, Seth;
- Ringshausen, Ingo
Publication type:
Article
Functional Roles of Bromodomain Proteins in Cancer.
Published in:
Cancers, 2021, v. 13, n. 14, p. 3606, doi. 10.3390/cancers13143606
By:
- Boyson, Samuel P.;
- Gao, Cong;
- Quinn, Kathleen;
- Boyd, Joseph;
- Paculova, Hana;
- Frietze, Seth;
- Glass, Karen C.
Publication type:
Article
Altering cancer transcriptomes using epigenomic inhibitors.
Published in:
Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/1756-8935-8-9
By:
- Gaddis, Malaina;
- Gerrard, Diana;
- Frietze, Seth;
- Farnham, Peggy J.
Publication type:
Article
Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with ERalpha.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-520
By:
- Frietze, Seth;
- O'Geen, Henriette;
- Littlepage, Laurie E.;
- Simion, Catalina;
- Sweeney, Colleen A.;
- Farnham, Peggy J.;
- Krig, Sheryl R.
Publication type:
Article
Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes.
Published in:
BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-689
By:
- O'Geen, Henriette;
- Lin, Yu-Hsuan;
- Xu, Xiaoqin;
- Echipare, Lorigail;
- Komashko, Vitalina M;
- He, Daniel;
- Frietze, Seth;
- Tanabe, Osamu;
- Shi, Lihong;
- Sartor, Maureen A;
- Engel, James D;
- Farnham, Peggy J
Publication type:
Article
Three‐dimensional analysis reveals altered chromatin interaction by enhancer inhibitors harbors TCF7L2‐regulated cancer gene signature.
Published in:
Journal of Cellular Biochemistry, 2019, v. 120, n. 3, p. 3056, doi. 10.1002/jcb.27449
By:
- Gerrard, Diana L.;
- Wang, Yao;
- Gaddis, Malaina;
- Zhou, Yufan;
- Wang, Junbai;
- Witt, Heather;
- Lin, Shili;
- Farnham, Peggy J.;
- Jin, Victor X.;
- Frietze, Seth E.
Publication type:
Article
The Conserved ATPase Get3/Arr4 Modulates the Activity of Membrane-Associated Proteins in Saccharomyces cerevisiae.
Published in:
Genetics, 2006, v. 174, n. 1, p. 215, doi. 10.1534/genetics.106.058362
By:
- Auld, Kathryn L.;
- Hitchcock, Amy L.;
- Doherty, Hugh K.;
- Frietze, Seth;
- Huang, nda S.;
- Silver, Pamela A.
Publication type:
Article
Thyroid hormone dependent transcriptional programming by TRβ requires SWI/SNF chromatin remodelers.
Published in:
Nucleic Acids Research, 2022, v. 50, n. 3, p. 1382, doi. 10.1093/nar/gkab1287
By:
- Gillis, Noelle E;
- Boyd, Joseph R;
- Tomczak, Jennifer A;
- Frietze, Seth;
- Carr, Frances E
Publication type:
Article
Genome-wide analysis reveals positional-nucleosome-oriented binding pattern of pioneer factor FOXA1.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 16, p. 7540, doi. 10.1093/nar/gkw659
By:
- Zhenqing Ye;
- Zhong Chen;
- Sunkel, Benjamin;
- Frietze, Seth;
- Huang, Tim H.-M.;
- Qianben Wang;
- Jin, Victor X.
Publication type:
Article
Author Correction: Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.
Published in:
2020
By:
- Zhou, Yufan;
- Gerrard, Diana L.;
- Wang, Junbai;
- Li, Tian;
- Yang, Yini;
- Fritz, Andrew J.;
- Rajendran, Mahitha;
- Fu, Xiaoyong;
- Stein, Gary;
- Schiff, Rachel;
- Lin, Shili;
- Frietze, Seth;
- Jin, Victor X.
Publication type:
Correction Notice
Epigenetic and transcriptome responsiveness to ER modulation by tissue selective estrogen complexes in breast epithelial and breast cancer cells.
Published in:
PLoS ONE, 2022, v. 17, n. 7, p. 1, doi. 10.1371/journal.pone.0271725
By:
- Messier, Terri L.;
- Boyd, Joseph R.;
- Gordon, Jonathan A. R.;
- Tye, Coralee E.;
- Page, Natalie A.;
- Toor, Rabail H.;
- Zaidi, Sayyed K.;
- Komm, Barry S.;
- Frietze, Seth;
- Stein, Janet L.;
- Lian, Jane B.;
- Stein, Gary S.
Publication type:
Article
ssvQC: an integrated CUT&RUN quality control workflow for histone modifications and transcription factors.
Published in:
BMC Research Notes, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13104-021-05781-8
By:
- Boyd, Joseph;
- Rodriguez, Princess;
- Schjerven, Hilde;
- Frietze, Seth
Publication type:
Article
peaksat: an R package for ChIP-seq peak saturation analysis.
Published in:
BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09109-7
By:
- Boyd, Joseph R;
- Gao, Cong;
- Quinn, Kathleen;
- Fritz, Andrew;
- Stein, Janet;
- Stein, Gary;
- Glass, Karen;
- Frietze, Seth
Publication type:
Article
An integrated encyclopedia of DNA elements in the human genome.
Published in:
Nature, 2012, v. 489, n. 7414, p. 57, doi. 10.1038/nature11247
By:
- Dunham, Ian;
- Kundaje, Anshul;
- Aldred, Shelley F.;
- Collins, Patrick J.;
- Davis, Carrie A.;
- Doyle, Francis;
- Epstein, Charles B.;
- Frietze, Seth;
- Harrow, Jennifer;
- Kaul, Rajinder;
- Khatun, Jainab;
- Lajoie, Bryan R.;
- Landt, Stephen G.;
- Lee, Bum-Kyu;
- Pauli, Florencia;
- Rosenbloom, Kate R.;
- Sabo, Peter;
- Safi, Alexias;
- Sanyal, Amartya;
- Shoresh, Noam
Publication type:
Article
Selective regulation of lymphopoiesis and leukemogenesis by individual zinc fingers of Ikaros.
Published in:
Nature Immunology, 2013, v. 14, n. 10, p. 1073, doi. 10.1038/ni.2707
By:
- Schjerven, Hilde;
- McLaughlin, Jami;
- Arenzana, Teresita L;
- Frietze, Seth;
- Cheng, Donghui;
- Wadsworth, Sarah E;
- Lawson, Gregory W;
- Bensinger, Steven J;
- Farnham, Peggy J;
- Witte, Owen N;
- Smale, Stephen T
Publication type:
Article
A guided‐inquiry investigation of genetic variants using Oxford nanopore sequencing for an undergraduate molecular biology laboratory course.
Published in:
Biochemistry & Molecular Biology Education, 2021, v. 49, n. 4, p. 588, doi. 10.1002/bmb.21514
By:
- Rodriguez, Princess D.;
- Mariani, Michael;
- Gay, Jamie;
- Hogan, Tyler C.;
- Amiel, Eyal;
- Deming, Paula B.;
- Frietze, Seth
Publication type:
Article
p38 MAP Kinase Signaling in Microglia Plays a Sex-Specific Protective Role in CNS Autoimmunity and Regulates Microglial Transcriptional States.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.715311
By:
- McGill, Mahalia M.;
- Richman, Alyssa R.;
- Boyd, Joseph R.;
- Sabikunnahar, Bristy;
- Lahue, Karolyn G.;
- Montgomery, Theresa L.;
- Caldwell, Sydney;
- Varnum, Stella;
- Frietze, Seth;
- Krementsov, Dimitry N.
Publication type:
Article
Immunotranscriptomic profiling the acute and clearance phases of a human challenge dengue virus serotype 2 infection model.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22930-6
By:
- Hanley, John P.;
- Tu, Huy A.;
- Dragon, Julie A.;
- Dickson, Dorothy M.;
- Rio-Guerra, Roxana del;
- Tighe, Scott W.;
- Eckstrom, Korin M.;
- Selig, Nicholas;
- Scarpino, Samuel V.;
- Whitehead, Stephen S.;
- Durbin, Anna P.;
- Pierce, Kristen K.;
- Kirkpatrick, Beth D.;
- Rizzo, Donna M.;
- Frietze, Seth;
- Diehl, Sean A.
Publication type:
Article
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3.
Published in:
Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r52
By:
- Frietze, Seth;
- Rui Wang;
- Lijing Yao;
- Yu Gyoung Tak;
- Zhenqing Ye;
- Gaddis, Malaina;
- Witt, Heather;
- Farnham, Peggy J.;
- Jin, Victor X.
Publication type:
Article
Varicella Zoster Virus Induces Nuclear Translocation of the Neurokinin-1 Receptor, Promoting Lamellipodia Formation and Viral Spread in Spinal Astrocytes.
Published in:
2018
By:
- Bubak, Andrew N;
- Como, Christina N;
- Blackmon, Anna M;
- Frietze, Seth;
- Mescher, Teresa;
- Jones, Dallas;
- Cohrs, Randall J;
- Paucek, Petr;
- Baird, Nicholas L;
- Nagel, Maria A
Publication type:
journal article
Integrating GWAS and Transcriptomics to Identify the Molecular Underpinnings of Thermal Stress Responses in Drosophila melanogaster.
Published in:
Frontiers in Plant Science, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00658
By:
- Lecheta, Melise C.;
- Awde, David N.;
- O’Leary, Thomas S.;
- Unfried, Laura N.;
- Jacobs, Nicholas A.;
- Whitlock, Miles H.;
- McCabe, Eleanor;
- Powers, Beck;
- Bora, Katie;
- Waters, James S.;
- Axen, Heather J.;
- Frietze, Seth;
- Lockwood, Brent L.;
- Teets, Nicholas M.;
- Cahan, Sara H.
Publication type:
Article
Higher-Order Chromatin Structures of Chromosomally Integrated HHV-6A Predict Integration Sites.
Published in:
Frontiers in Cellular & Infection Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fcimb.2021.612656
By:
- Mariani, Michael;
- Zimmerman, Cosima;
- Rodriguez, Princess;
- Hasenohr, Ellie;
- Aimola, Giulia;
- Gerrard, Diana Lea;
- Richman, Alyssa;
- Dest, Andrea;
- Flamand, Louis;
- Kaufer, Benedikt;
- Frietze, Seth
Publication type:
Article
ZNF274 Recruits the Histone Methyltransferase SETDB1 to the 3' Ends of ZNF Genes.
Published in:
PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015082
By:
- Frietze, Seth;
- O'Geen, Henriette;
- Blahnik, Kimberly R.;
- Jin, Victor X.;
- Farnham, Peggy J.
Publication type:
Article
RUNX1 and RUNX2 transcription factors function in opposing roles to regulate breast cancer stem cells.
Published in:
Journal of Cellular Physiology, 2020, v. 235, n. 10, p. 7261, doi. 10.1002/jcp.29625
By:
- Fritz, Andrew J.;
- Hong, Deli;
- Boyd, Joseph;
- Kost, Jason;
- Finstaad, Kristiaan H.;
- Fitzgerald, Mark P.;
- Hanna, Sebastian;
- Abuarqoub, Alqassem H.;
- Malik, Miles;
- Bushweller, John;
- Tye, Coralee;
- Ghule, Prachi;
- Gordon, Jonathan;
- Frietze, Seth;
- Zaidi, Sayyed K.;
- Lian, Jane B.;
- Stein, Janet L.;
- Stein, Gary S.
Publication type:
Article
RUNX1‐dependent mechanisms in biological control and dysregulation in cancer.
Published in:
Journal of Cellular Physiology, 2019, v. 234, n. 6, p. 8597, doi. 10.1002/jcp.27841
By:
- Hong, Deli;
- Fritz, Andrew J.;
- Gordon, Jonathan A.;
- Tye, Coralee E.;
- Boyd, Joseph R.;
- Tracy, Kirsten M.;
- Frietze, Seth E.;
- Carr, Frances E.;
- Nickerson, Jeffrey A.;
- Wijnen, Andre J.;
- Imbalzano, Anthony N.;
- Zaidi, Sayyed K.;
- Lian, Jane B.;
- Stein, Janet L.;
- Stein, Gary S.
Publication type:
Article
Common tumor‐suppressive signaling of thyroid hormone receptor beta in breast and thyroid cancer cells.
Published in:
Molecular Carcinogenesis, 2021, v. 60, n. 12, p. 874, doi. 10.1002/mc.23352
By:
- Bolf, Eric L.;
- Gillis, Noelle E.;
- Davidson, Cole D.;
- Cozzens, Lauren M.;
- Kogut, Sophie;
- Tomczak, Jennifer A.;
- Frietze, Seth;
- Carr, Frances E.
Publication type:
Article
Integrating GWAS and Transcriptomics to Identify the Molecular Underpinnings of Thermal Stress Responses in Drosophila melanogaster.
Published in:
Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00658
By:
- Lecheta, Melise C.;
- Awde, David N.;
- O'Leary, Thomas S.;
- Unfried, Laura N.;
- Jacobs, Nicholas A.;
- Whitlock, Miles H.;
- McCabe, Eleanor;
- Powers, Beck;
- Bora, Katie;
- Waters, James S.;
- Axen, Heather J.;
- Frietze, Seth;
- Lockwood, Brent L.;
- Teets, Nicholas M.;
- Cahan, Sara H.
Publication type:
Article
Transcriptome analysis of primary adult B‐cell lineage acute lymphoblastic leukemia identifies pathogenic variants and gene fusions, and predicts subtypes for in depth molecular diagnosis.
Published in:
European Journal of Haematology, 2024, v. 112, n. 5, p. 731, doi. 10.1111/ejh.14164
By:
- Podgorica, Mirjam;
- Drivet, Elsa;
- Viken, Jonas Krag;
- Richman, Alyssa;
- Vestbøstad, Johanne;
- Szodoray, Peter;
- Kvam, Ann Kristin;
- Wik, Hilde Skuterud;
- Tjønnfjord, Geir E.;
- Munthe, Ludvig A.;
- Frietze, Seth;
- Schjerven, Hilde
Publication type:
Article
Distinct regulatory networks control toxin gene expression in elapid and viperid snakes.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10090-y
By:
- Modahl, Cassandra M.;
- Han, Summer Xia;
- van Thiel, Jory;
- Vaz, Candida;
- Dunstan, Nathan L.;
- Frietze, Seth;
- Jackson, Timothy N. W.;
- Mackessy, Stephen P.;
- Kini, R. Manjunatha
Publication type:
Article
Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer.
Published in:
Journal of Cellular Physiology, 2018, v. 233, n. 2, p. 1278, doi. 10.1002/jcp.25996
By:
- Fritz, Andrew J.;
- Ghule, Prachi N.;
- Boyd, Joseph R.;
- Tye, Coralee E.;
- Page, Natalie A.;
- Hong, Deli;
- Shirley, David J.;
- Weinheimer, Adam S.;
- Barutcu, Ahmet R.;
- Gerrard, Diana L.;
- Frietze, Seth;
- van Wijnen, Andre J.;
- Zaidi, Sayyed K.;
- Imbalzano, Anthony N.;
- Lian, Jane B.;
- Stein, Janet L.;
- Stein, Gary S.
Publication type:
Article
Chromatin Profiles of Chromosomally Integrated Human Herpesvirus-6A.
Published in:
Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01408
By:
- Saviola, Anthony J.;
- Zimmermann, Cosima;
- Mariani, Michael P.;
- Signorelli, Sylvia A.;
- Gerrard, Diana L.;
- Boyd, Joseph R.;
- Wight, Darren J.;
- Morissette, Guillaume;
- Gravel, Annie;
- Dubuc, Isabelle;
- Flamand, Louis;
- Kaufer, Benedikt B.;
- Frietze, Seth
Publication type:
Article
Reading the message: Connections between the epigenetic landscape bromodomain activity.
Published in:
FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.0R269
By:
- Glass, Karen C.;
- Montgomery, Cameron;
- Lloyd, Jonathan T.;
- McLaughlin, Kyle;
- Marunde, Matthew R.;
- Evans, Chiara M.;
- Boyson, Samuel P.;
- Keogh, Michael‐Christopher;
- Frietze, Seth
Publication type:
Article
Non-Coding RNA Signatures of B-Cell Acute Lymphoblastic Leukemia.
Published in:
International Journal of Molecular Sciences, 2021, v. 22, n. 5, p. 2683, doi. 10.3390/ijms22052683
By:
- Rodriguez, Princess D.;
- Paculova, Hana;
- Kogut, Sophie;
- Heath, Jessica;
- Schjerven, Hilde;
- Frietze, Seth;
- Soverini, Simona
Publication type:
Article
Ikaros Regulates microRNA Networks in Acute Lymphoblastic Leukemia.
Published in:
Epigenomes, 2022, v. 6, n. 4, p. 37, doi. 10.3390/epigenomes6040037
By:
- Kogut, Sophie;
- Paculova, Hana;
- Rodriguez, Princess;
- Boyd, Joseph;
- Richman, Alyssa;
- Palaria, Amrita;
- Schjerven, Hilde;
- Frietze, Seth
Publication type:
Article
Temporal dynamic reorganization of 3D chromatin architecture in hormone-induced breast cancer and endocrine resistance.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09320-9
By:
- Zhou, Yufan;
- Gerrard, Diana L.;
- Wang, Junbai;
- Li, Tian;
- Yang, Yini;
- Fritz, Andrew J.;
- Rajendran, Mahitha;
- Fu, Xiaoyong;
- Schiff, Rachel;
- Lin, Shili;
- Frietze, Seth;
- Jin, Victor X.
Publication type:
Article
Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes.
Published in:
BMC Genomics, 2010, v. 11, p. 689, doi. 10.1186/1471-2164-11-689
By:
- O'Geen, Henriette;
- Yu-Hsuan Lin;
- Xiaoqin Xu;
- Echipare, Lorigail;
- Komashko, Vitalina M.;
- He, Daniel;
- Frietze, Seth;
- Tanabe, Osamu;
- Lihong Shi;
- Sartor, Maureen A.;
- Engel, James D.;
- Farnham, Peggy J.
Publication type:
Article

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