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Pituitary Tumor Transforming Gene 1 Orchestrates Gene Regulatory Variation in Mouse Ventral Midbrain During Aging.
Published in:
Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.566734
By:
- Gui, Yujuan;
- Thomas, Mélanie H.;
- Garcia, Pierre;
- Karout, Mona;
- Halder, Rashi;
- Michelucci, Alessandro;
- Kollmus, Heike;
- Zhou, Cuiqi;
- Melmed, Shlomo;
- Schughart, Klaus;
- Balling, Rudi;
- Mittelbronn, Michel;
- Nadeau, Joseph H.;
- Williams, Robert W.;
- Sauter, Thomas;
- Buttini, Manuel;
- Sinkkonen, Lasse
Publication type:
Article
Impact of Docetaxel on blood-brain barrier function and formation of breast cancer brain metastases.
Published in:
Journal of Experimental & Clinical Cancer Research (17569966), 2019, v. 38, n. 1, p. N.PAG, doi. 10.1186/s13046-019-1427-1
By:
- Bernatz, Simon;
- Ilina, Elena I.;
- Devraj, Kavi;
- Harter, Patrick N.;
- Mueller, Klaus;
- Kleber, Sascha;
- Braun, Yannick;
- Penski, Cornelia;
- Renner, Christoph;
- Halder, Rashi;
- Jennewein, Lukas;
- Solbach, Christine;
- Thorsen, Frits;
- Pestalozzi, Bernhard C.;
- Mischo, Axel;
- Mittelbronn, Michel
Publication type:
Article
RvD1 n-3 DPA Downregulates the Transcription of Pro-Inflammatory Genes in Oral Epithelial Cells and Reverses Nuclear Translocation of Transcription Factor p65 after TNF-α Stimulation.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 14878, doi. 10.3390/ijms232314878
By:
- Balta, Maria G.;
- Schreurs, Olav;
- Halder, Rashi;
- Küntziger, Thomas M.;
- Sætre, Frank;
- Blix, Inger Johanne S.;
- Bækkevold, Espen S.;
- Glaab, Enrico;
- Schenck, Karl
Publication type:
Article
Cardiac fibroblast-derived microRNA passenger strand-enriched exosomes mediate cardiomyocyte hypertrophy.
Published in:
Journal of Clinical Investigation, 2014, v. 124, n. 5, p. 2136, doi. 10.1172/JCI70577
By:
- Bang, Claudia;
- Batkai, Sandor;
- Dangwal, Seema;
- Gupta, Shashi Kumar;
- Foinquinos, Ariana;
- Holzmann, Angelika;
- Just, Annette;
- Remke, Janet;
- Zimmer, Karina;
- Zeug, Andre;
- Ponimaskin, Evgeni;
- Schmiedl, Andreas;
- Xiaoke Yin;
- Mayr, Manuel;
- Halder, Rashi;
- Fischer, Andre;
- Engelhardt, Stefan;
- Yuanyuan Wei;
- Schober, Andreas;
- Fiedler, Jan
Publication type:
Article
TREM2 triggers microglial density and age‐related neuronal loss.
Published in:
Glia, 2019, v. 67, n. 3, p. 539, doi. 10.1002/glia.23563
By:
- Linnartz‐Gerlach, Bettina;
- Bodea, Liviu‐Gabriel;
- Klaus, Christine;
- Ginolhac, Aurélien;
- Halder, Rashi;
- Sinkkonen, Lasse;
- Walter, Jochen;
- Colonna, Marco;
- Neumann, Harald
Publication type:
Article
Non-metastatic 2 (NME2)-mediated suppression of lung cancer metastasis involves transcriptional regulation of key cell adhesion factor vinculin.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 18, p. 11589, doi. 10.1093/nar/gku860
By:
- Thakur, Ram Krishna;
- Yadav, Vinod Kumar;
- Kumar, Akinchan;
- Singh, Ankita;
- Pal, Krishnendu;
- Hoeppner, Luke;
- Saha, Dhurjhoti;
- Purohit, Gunjan;
- Basundra, Richa;
- Kar, Anirban;
- Halder, Rashi;
- Kumar, Pankaj;
- Baral, Aradhita;
- Kumar, MJ Mahesh;
- Baldi, Alfonso;
- Vincenzi, Bruno;
- Lorenzon, Laura;
- Banerjee, Rajkumar;
- Kumar, Praveen;
- Shridhar, Viji
Publication type:
Article
Promoter-proximal transcription factor binding is transcriptionally active when coupled with nucleosome repositioning in immediate vicinity.
Published in:
Nucleic Acids Research, 2014, v. 42, n. 15, p. 9602, doi. 10.1093/nar/gku596
By:
- Yadav, Vinod Kumar;
- Thakur, Ram Krishna;
- Eckloff, Bruce;
- Baral, Aradhita;
- Singh, Ankita;
- Halder, Rashi;
- Akinchan Kumar;
- Mohammad Parwez Alam;
- Kundu, Tapas K.;
- Pandita, Raj;
- Pandita, Tej K.;
- Wieben, Eric D.;
- Chowdhury, Shantanu
Publication type:
Article
Quadruplex-single nucleotide polymorphisms (Quad-SNP) influence gene expression difference among individuals.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 9, p. 3800, doi. 10.1093/nar/gkr1258
By:
- Baral, Aradhita;
- Kumar, Pankaj;
- Halder, Rashi;
- Mani, Prithvi;
- Yadav, Vinod Kumar;
- Singh, Ankita;
- Das, Swapan K.;
- Chowdhury, Shantanu
Publication type:
Article
Evolution of the murine gut resistome following broad-spectrum antibiotic treatment.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29919-9
By:
- de Nies, Laura;
- Busi, Susheel Bhanu;
- Tsenkova, Mina;
- Halder, Rashi;
- Letellier, Elisabeth;
- Wilmes, Paul
Publication type:
Article
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27542-8
By:
- Van Den Bossche, Tim;
- Kunath, Benoit J.;
- Schallert, Kay;
- Schäpe, Stephanie S.;
- Abraham, Paul E.;
- Armengaud, Jean;
- Arntzen, Magnus Ø.;
- Bassignani, Ariane;
- Benndorf, Dirk;
- Fuchs, Stephan;
- Giannone, Richard J.;
- Griffin, Timothy J.;
- Hagen, Live H.;
- Halder, Rashi;
- Henry, Céline;
- Hettich, Robert L.;
- Heyer, Robert;
- Jagtap, Pratik;
- Jehmlich, Nico;
- Jensen, Marlene
Publication type:
Article
Single cell transcriptome analysis of the THY-Tau22 mouse model of Alzheimer's disease reveals sex-dependent dysregulations.
Published in:
Cell Death Discovery, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41420-024-01885-9
By:
- Ali, Muhammad;
- Garcia, Pierre;
- Lunkes, Laetitia P.;
- Sciortino, Alessia;
- Thomas, Melanie;
- Heurtaux, Tony;
- Grzyb, Kamil;
- Halder, Rashi;
- Coowar, Djalil;
- Skupin, Alex;
- Buée, Luc;
- Blum, David;
- Buttini, Manuel;
- Glaab, Enrico
Publication type:
Article
Synapse alterations precede neuronal damage and storage pathology in a human cerebral organoid model of CLN3-juvenile neuronal ceroid lipofuscinosis.
Published in:
Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. 1, doi. 10.1186/s40478-019-0871-7
By:
- Gomez-Giro, Gemma;
- Arias-Fuenzalida, Jonathan;
- Jarazo, Javier;
- Zeuschner, Dagmar;
- Ali, Muhammad;
- Possemis, Nina;
- Bolognin, Silvia;
- Halder, Rashi;
- Jäger, Christian;
- Kuper, Willemijn F. E.;
- van Hasselt, Peter M.;
- Zaehres, Holm;
- del Sol, Antonio;
- van der Putten, Herman;
- Schöler, Hans R.;
- Schwamborn, Jens C.
Publication type:
Article
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07631-x
By:
- Wampach, Linda;
- Heintz-Buschart, Anna;
- Fritz, Joëlle V.;
- Ramiro-Garcia, Javier;
- Habier, Janine;
- Herold, Malte;
- Narayanasamy, Shaman;
- Kaysen, Anne;
- Hogan, Angela H.;
- Bindl, Lutz;
- Bottu, Jean;
- Halder, Rashi;
- Sjöqvist, Conny;
- May, Patrick;
- Andersson, Anders F.;
- de Beaufort, Carine;
- Wilmes, Paul
Publication type:
Article
Elucidating tumour-associated microglia/macrophage diversity along glioblastoma progression and under ACOD1 deficiency.
Published in:
Molecular Oncology, 2022, v. 16, n. 17, p. 3167, doi. 10.1002/1878-0261.13287
By:
- Pires-Afonso, Yolanda;
- Muller, Arnaud;
- Grzyb, Kamil;
- Oudin, Anaïs;
- Yabo, Yahaya A.;
- Sousa, Carole;
- Scafidi, Andrea;
- Poli, Aurélie;
- Cosma, Antonio;
- Halder, Rashi;
- Coowar, Djalil;
- Golebiewska, Anna;
- Skupin, Alexander;
- Niclou, Simone P.;
- Michelucci, Alessandro
Publication type:
Article
2-Hydroxyglutarate modulates histone methylation at specific loci and alters gene expression via Rph1 inhibition.
Published in:
Life Science Alliance, 2024, v. 7, n. 2, p. 1, doi. 10.26508/lsa.202302333
By:
- Gavriil, Marios;
- Proietto, Marco;
- Paczia, Nicole;
- Ginolhac, Aurelien;
- Halder, Rashi;
- Valceschini, Elena;
- Sauter, Thomas;
- Linster, Carole L.;
- Sinkkonen, Lasse
Publication type:
Article
Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes.
Published in:
Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-1004-3
By:
- Calusinska, Magdalena;
- Marynowska, Martyna;
- Bertucci, Marie;
- Untereiner, Boris;
- Klimek, Dominika;
- Goux, Xavier;
- Sillam-Dussès, David;
- Gawron, Piotr;
- Halder, Rashi;
- Wilmes, Paul;
- Ferrer, Pau;
- Gerin, Patrick;
- Roisin, Yves;
- Delfosse, Philippe
Publication type:
Article
Dichloromethane Degradation Pathway from Unsequenced Hyphomicrobium sp. MC8b Rapidly Explored by Pan-Proteomics.
Published in:
Microorganisms, 2020, v. 8, n. 12, p. 1876, doi. 10.3390/microorganisms8121876
By:
- Hayoun, Karim;
- Geersens, Emilie;
- Laczny, Cédric C.;
- Halder, Rashi;
- Lázaro Sánchez, Carmen;
- Manna, Abhijit;
- Bringel, Françoise;
- Ryckelynck, Michaël;
- Wilmes, Paul;
- Muller, Emilie E. L.;
- Alpha-Bazin, Béatrice;
- Armengaud, Jean;
- Vuilleumier, Stéphane
Publication type:
Article
HDAC inhibitor-dependent transcriptome and memory reinstatement in cognitive decline models.
Published in:
Journal of Clinical Investigation, 2015, v. 125, n. 9, p. 3572, doi. 10.1172/JCI79942
By:
- Benito, Eva;
- Urbanke, Hendrik;
- Ramachandran, Binu;
- Barth, Jonas;
- Halder, Rashi;
- Awasthi, Ankit;
- Jain, Gaurav;
- Capece, Vincenzo;
- Burkhardt, Susanne;
- Navarro-Sala, Magdalena;
- Nagarajan, Sankari;
- Schütz, Anna-Lena;
- Johnsen, Steven A.;
- Bonn, Stefan;
- Lührmann, Reinhardt;
- Dean, Camin;
- Fischer, André
Publication type:
Article
Impaired neuron differentiation in GBA-associated Parkinson's disease is linked to cell cycle defects in organoids.
Published in:
NPJ Parkinson's Disease, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41531-023-00616-8
By:
- Rosety, Isabel;
- Zagare, Alise;
- Saraiva, Claudia;
- Nickels, Sarah;
- Antony, Paul;
- Almeida, Catarina;
- Glaab, Enrico;
- Halder, Rashi;
- Velychko, Sergiy;
- Rauen, Thomas;
- Schöler, Hans R.;
- Bolognin, Silvia;
- Sauter, Thomas;
- Jarazo, Javier;
- Krüger, Rejko;
- Schwamborn, Jens C.
Publication type:
Article
Systems level analysis of sex-dependent gene expression changes in Parkinson's disease.
Published in:
NPJ Parkinson's Disease, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41531-023-00446-8
By:
- Tranchevent, Léon-Charles;
- Halder, Rashi;
- Glaab, Enrico
Publication type:
Article
Functional meta-omics provide critical insights into long- and short-read assemblies.
Published in:
Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab330
By:
- Galata, Valentina;
- Busi, Susheel Bhanu;
- Kunath, Benoît Josef;
- Nies, Laura de;
- Calusinska, Magdalena;
- Halder, Rashi;
- May, Patrick;
- Wilmes, Paul;
- Laczny, Cédric Christian
Publication type:
Article
Single-Cell Transcriptomics and In Situ Morphological Analyses Reveal Microglia Heterogeneity Across the Nigrostriatal Pathway.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.639613
By:
- Uriarte Huarte, Oihane;
- Kyriakis, Dimitrios;
- Heurtaux, Tony;
- Pires-Afonso, Yolanda;
- Grzyb, Kamil;
- Halder, Rashi;
- Buttini, Manuel;
- Skupin, Alexander;
- Mittelbronn, Michel;
- Michelucci, Alessandro
Publication type:
Article
TRPV1 regulates excitatory innervation of OLM neurons in the hippocampus.
Published in:
Nature Communications, 2017, v. 8, n. 7, p. 15878, doi. 10.1038/ncomms15878
By:
- Hurtado-Zavala, Joaquin I.;
- Ramachandran, Binu;
- Ahmed, Saheeb;
- Halder, Rashi;
- Bolleyer, Christiane;
- Awasthi, Ankit;
- Stahlberg, Markus A.;
- Wagener, Robin J.;
- Anderson, Kristin;
- Drenan, Ryan M.;
- Lester, Henry A.;
- Miwa, Julie M.;
- Staiger, Jochen F.;
- Fischer, Andre;
- Dean, Camin
Publication type:
Article
The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02015
By:
- Malabirade, Antoine;
- Habier, Janine;
- Heintz-Buschart, Anna;
- May, Patrick;
- Godet, Julien;
- Halder, Rashi;
- Etheridge, Alton;
- Galas, David;
- Wilmes, Paul;
- Fritz, Joëlle V.
Publication type:
Article
Metabolic modelling-based in silico drug target prediction identifies six novel repurposable drugs for melanoma.
Published in:
Cell Death & Disease, 2023, v. 14, n. 7, p. 1, doi. 10.1038/s41419-023-05955-1
By:
- Bintener, Tamara;
- Pacheco, Maria Pires;
- Philippidou, Demetra;
- Margue, Christiane;
- Kishk, Ali;
- Del Mistro, Greta;
- Di Leo, Luca;
- Moscardó Garcia, Maria;
- Halder, Rashi;
- Sinkkonen, Lasse;
- De Zio, Daniela;
- Kreis, Stephanie;
- Kulms, Dagmar;
- Sauter, Thomas
Publication type:
Article
Focal adhesion kinase plays a dual role in TRAIL resistance and metastatic outgrowth of malignant melanoma.
Published in:
Cell Death & Disease, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41419-022-04502-8
By:
- Del Mistro, Greta;
- Riemann, Shamala;
- Schindler, Sebastian;
- Beissert, Stefan;
- Kontermann, Roland E.;
- Ginolhac, Aurelien;
- Halder, Rashi;
- Presta, Luana;
- Sinkkonen, Lasse;
- Sauter, Thomas;
- Kulms, Dagmar
Publication type:
Article
Cytokine‐mediated modulation of the hepatic miRNome: miR‐146b‐5p is an IL‐6‐inducible miRNA with multiple targets.
Published in:
Journal of Leukocyte Biology, 2018, v. 104, n. 5, p. 987, doi. 10.1002/JLB.MA1217-499RR
By:
- Kirchmeyer, Mélanie;
- Servais, Florence A.;
- Hamdorf, Matthias;
- Kreis, Stephanie;
- Behrmann, Iris;
- Nazarov, Petr V.;
- Vallar, Laurent;
- Ginolhac, Aurélien;
- Halder, Rashi;
- Glanemann, Matthias;
- Rubie, Claudia;
- Lammert, Frank
Publication type:
Article
Transcriptional and Chromatin Accessibility Profiling of Neural Stem Cells Differentiating into Astrocytes Reveal Dynamic Signatures Affected under Inflammatory Conditions.
Published in:
Cells (2073-4409), 2023, v. 12, n. 6, p. 948, doi. 10.3390/cells12060948
By:
- Pavlou, Maria Angeliki S.;
- Singh, Kartikeya;
- Ravichandran, Srikanth;
- Halder, Rashi;
- Nicot, Nathalie;
- Birck, Cindy;
- Grandbarbe, Luc;
- del Sol, Antonio;
- Michelucci, Alessandro
Publication type:
Article
Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency.
Published in:
Nucleic Acids Research, 2019, v. 47, n. 3, p. 1141, doi. 10.1093/nar/gky1240
By:
- Gérard, Deborah;
- Schmidt, Florian;
- Ginolhac, Aurélien;
- Schmitz, Martine;
- Halder, Rashi;
- Ebert, Peter;
- Schulz, Marcel H;
- Sauter, Thomas;
- Sinkkonen, Lasse
Publication type:
Article
Single-Cell Transcriptional Profiling and Gene Regulatory Network Modeling in Tg2576 Mice Reveal Gender-Dependent Molecular Features Preceding Alzheimer-Like Pathologies.
Published in:
Molecular Neurobiology, 2024, v. 61, n. 2, p. 541, doi. 10.1007/s12035-022-02985-2
By:
- Ali, Muhammad;
- Huarte, Oihane Uriarte;
- Heurtaux, Tony;
- Garcia, Pierre;
- Rodriguez, Beatriz Pardo;
- Grzyb, Kamil;
- Halder, Rashi;
- Skupin, Alexander;
- Buttini, Manuel;
- Glaab, Enrico
Publication type:
Article
Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites.
Published in:
Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00872-3
By:
- Marynowska, Martyna;
- Goux, Xavier;
- Sillam-Dussès, David;
- Rouland-Lefèvre, Corinne;
- Halder, Rashi;
- Wilmes, Paul;
- Gawron, Piotr;
- Roisin, Yves;
- Delfosse, Philippe;
- Calusinska, Magdalena
Publication type:
Article
Developmental GABA polarity switch and neuronal plasticity in Bioengineered Neuronal Organoids.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17521-w
By:
- Zafeiriou, Maria-Patapia;
- Bao, Guobin;
- Hudson, James;
- Halder, Rashi;
- Blenkle, Alica;
- Schreiber, Marie-Kristin;
- Fischer, Andre;
- Schild, Detlev;
- Zimmermann, Wolfram-Hubertus
Publication type:
Article
Histone-Methyltransferase MLL2 (KMT2B) Is Required for Memory Formation in Mice.
Published in:
Journal of Neuroscience, 2013, v. 33, n. 8, p. 3452, doi. 10.1523/JNEUROSCI.3356-12.2013
By:
- Kerimoglu, Cemil;
- Agis-Balboa, Roberto C.;
- Kranz, Andrea;
- Stilling, Roman;
- Bahari-Javan, Sanaz;
- Benito-Garagorri, Eva;
- Halder, Rashi;
- Burkhardt, Susanne;
- Stewart, Adrian Francis;
- Fischer, Andre
Publication type:
Article

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