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- Title
RNA secondary structure diagrams for very large molecules: RNAfdl.
- Authors
Hecker, Nikolai; Wiegels, Tim; Torda, Andrew E.
- Abstract
Summary: There are many programs that can read the secondary structure of an RNA molecule and draw a diagram, but hardly any that can cope with 103 bases. RNAfdl is slow but capable of producing intersection-free diagrams for ribosome-sized structures, has a graphical user interface for adjustments and produces output in common formats.Availability and implementation: Source code is available under the GNU General Public License v3.0 at http://sourceforge.net/projects/rnafdl for Linux and similar systems or Windows using MinGW. RNAfdl is implemented in C, uses the Cairo 2D graphics library and offers both command line and graphical user interfaces.Contact: hecker@rth.dkSupplementary information: Supplementary data are available at Bioinformatics online.
- Subjects
MOLECULAR structure of RNA; RIBOSOME structure; GRAPHICAL user interfaces; BIOAVAILABILITY; SOURCE code; LINUX operating systems; BIOINFORMATICS
- Publication
Bioinformatics, 2013, Vol 29, Issue 22, p2941
- ISSN
1367-4803
- Publication type
Article
- DOI
10.1093/bioinformatics/btt496