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B cell zone reticular cell microenvironments shape CXCL13 gradient formation.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17135-2
By:
- Cosgrove, Jason;
- Novkovic, Mario;
- Albrecht, Stefan;
- Pikor, Natalia B.;
- Zhou, Zhaoukun;
- Onder, Lucas;
- Mörbe, Urs;
- Cupovic, Jovana;
- Miller, Helen;
- Alden, Kieran;
- Thuery, Anne;
- O'Toole, Peter;
- Pinter, Rita;
- Jarrett, Simon;
- Taylor, Emily;
- Venetz, Daniel;
- Heller, Manfred;
- Uguccioni, Mariagrazia;
- Legler, Daniel F.;
- Lacey, Charles J.
Publication type:
Article
Utilising a simulation platform to understand the effect of domain model assumptions.
Published in:
Natural Computing, 2015, v. 14, n. 1, p. 99, doi. 10.1007/s11047-014-9428-7
By:
- Alden, Kieran;
- Andrews, Paul;
- Veiga-Fernandes, Henrique;
- Timmis, Jon;
- Coles, Mark
Publication type:
Article
Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems.
Published in:
PLoS Computational Biology, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002916
By:
- Alden, Kieran;
- Read, Mark;
- Timmis, Jon;
- Andrews, Paul S.;
- Veiga-Fernandes, Henrique;
- Coles, Mark
Publication type:
Article
Differential RET Signaling Pathways Drive Development of the Enteric Lymphoid and Nervous Systems.
Published in:
Science Signaling, 2012, v. 5, n. 235, p. 1, doi. 10.1126/scisignal.2002734
By:
- Patel, Amisha;
- Harker, Nicola;
- Moreira-Santos, Lara;
- Ferreira, Manuela;
- Alden, Kieran;
- Timmis, Jon;
- Foster, Katie;
- Garefalaki, Anna;
- Pachnis, Panayotis;
- Andrews, Paul;
- Enomoto, Hideki;
- Milbrandt, Jeffrey;
- Pachnis, Vassilis;
- Coles, Mark C.;
- Kioussis, Dimitris;
- Veiga-Fernandes, Henrique
Publication type:
Article
Computing: Scientific software needs quality control.
Published in:
Nature, 2013, v. 502, n. 7472, p. 448, doi. 10.1038/502448d
By:
- Alden, Kieran;
- Read, Mark
Publication type:
Article
Applying spartan to Understand Parameter Uncertainty in Simulations.
Published in:
R Journal, 2014, v. 6, n. 2, p. 63, doi. 10.32614/RJ-2014-025
By:
- Alden, Kieran;
- Read, Mark;
- Andrews, Paul S.;
- Timmis, Jon;
- Coles, Mark
Publication type:
Article
dConsensus: a tool for displaying domainassignments by multiple structure-basedalgorithms and for construction of a consensusassignment.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 310, doi. 10.1186/1471-2105-11-310
By:
- Alden, Kieran;
- Veretnik, Stella;
- Bourne, Philip E.
Publication type:
Article
Model-Driven Experimentation: A New Approach to Understand Mechanisms of Tertiary Lymphoid Tissue Formation, Function, and Therapeutic Resolution.
Published in:
Frontiers in Immunology, 2017, v. 8, p. 1, doi. 10.3389/fimmu.2016.00658
By:
- Butler, James A.;
- Cosgrove, Jason;
- Alden, Kieran;
- Timmis, Jon;
- Coles, Mark Christopher
Publication type:
Article
Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0.
Published in:
PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011303
By:
- Cockx, Bastiaan J. R.;
- Foster, Tim;
- Clegg, Robert J.;
- Alden, Kieran;
- Arya, Sankalp;
- Stekel, Dov J.;
- Smets, Barth F.;
- Kreft, Jan-Ulrich
Publication type:
Article
ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour.
Published in:
PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005351
By:
- Evans, Stephanie;
- Alden, Kieran;
- Cucurull-Sanchez, Lourdes;
- Larminie, Christopher;
- Coles, Mark C.;
- Kullberg, Marika C.;
- Timmis, Jon
Publication type:
Article
Simulating CXCR5 Dynamics in Complex Tissue Microenvironments.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.703088
By:
- Cosgrove, Jason;
- Alden, Kieran;
- Stein, Jens V.;
- Coles, Mark C.;
- Timmis, Jon
Publication type:
Article
Strategies for calibrating models of biology.
Published in:
Briefings in Bioinformatics, 2020, v. 21, n. 1, p. 24, doi. 10.1093/bib/bby092
By:
- Read, Mark N;
- Alden, Kieran;
- Timmis, Jon;
- Andrews, Paul S
Publication type:
Article
Pairing experimentation and computational modeling to understand the role of tissue inducer cells in the development of lymphoid organs.
Published in:
Frontiers in Immunology, 2012, v. 3, p. 1, doi. 10.3389/fimmu.2012.00172
By:
- Alden, Kieran;
- Timmis, Jon;
- Andrews, Paul S.;
- Veiga-Fernandes, Henrique;
- Coles, Mark C.
Publication type:
Article
Pairing experimentation and computational modelling to understand the role of tissue inducer cells in the development of lymphoid organs.
Published in:
Frontiers in Immunology, 2012, v. 3, p. 1, doi. 10.3389/fimmu.2012.00172
By:
- Alden, Kieran;
- Timmis, Jon;
- Andrews, Paul;
- Veiga-Fernandes, Henrique;
- Coles, Mark
Publication type:
Article
Application of Modeling Approaches to Explore Vaccine Adjuvant Mode-of-Action.
Published in:
Frontiers in Immunology, 2019, p. 1, doi. 10.3389/fimmu.2019.02150
By:
- Buckley, Paul R.;
- Alden, Kieran;
- Coccia, Margherita;
- Chalon, Aurélie;
- Collignon, Catherine;
- Temmerman, Stéphane T.;
- Didierlaurent, Arnaud M.;
- van der Most, Robbert;
- Timmis, Jon;
- Andersen, Claus A.;
- Coles, Mark C.
Publication type:
Article

Found: 15