Found: 40
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Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.
- Published in:
- Journal of Extracellular Vesicles, 2015, v. 4, p. 1, doi. 10.3402/jev.v4.27497
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- Publication type:
- Article
Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. 15, p. e99, doi. 10.1093/nar/gkm549
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- Publication type:
- Article
Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00879-x
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- Publication type:
- Article
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 1, p. 66, doi. 10.1038/nbt.1518
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- Publication type:
- Article
Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine of Healthy Subjects.
- Published in:
- Scientific Reports, 2017, p. 44061, doi. 10.1038/srep44061
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- Publication type:
- Article
Extending gene ontology in the context of extracellular RNA and vesicle communication.
- Published in:
- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0061-5
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- Publication type:
- Article
Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms.
- Published in:
- Functional & Integrative Genomics, 2007, v. 7, n. 4, p. 335, doi. 10.1007/s10142-007-0054-7
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- Publication type:
- Article
Annotating non-coding regions of the genome.
- Published in:
- 2010
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- Publication type:
- journal article
Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-37
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- Publication type:
- Article
Tiling array data analysis: a multiscale approach using wavelets.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 57, doi. 10.1186/1471-2105-12-57
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- Publication type:
- Article
AlleleSeq: analysis of allele-specific expression and binding in a network framework.
- Published in:
- Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.54
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- Publication type:
- Article
Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004132
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- Publication type:
- Article
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002190
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- Publication type:
- Article
Modeling ChIP Sequencing In Silico with Applications.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000158
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- Publication type:
- Article
Corrigendum: Diverse human extracellular RNAs are widely detected in human plasma.
- Published in:
- Nature Communications, 2016, v. 7, n. 6, p. 11902, doi. 10.1038/ncomms11902
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- Publication type:
- Article
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals.
- Published in:
- Nature Communications, 2016, v. 7, n. 4, p. 11101, doi. 10.1038/ncomms11101
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- Publication type:
- Article
Diverse human extracellular RNAs are widely detected in human plasma.
- Published in:
- Nature Communications, 2016, v. 7, n. 4, p. 11106, doi. 10.1038/ncomms11106
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- Publication type:
- Article
Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0961-9
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- Publication type:
- Article
The real cost of sequencing: scaling computation to keep pace with data generation.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0917-0
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- Publication type:
- Article
MUSIC: Identification of Enriched Regions in ChIP-Seq Experiments using a Mappability-Corrected Multiscale Signal Processing Framework.
- Published in:
- Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0474-3
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- Publication type:
- Article
OrthoClust: an orthology-based network framework for clustering data across multiple species.
- Published in:
- Genome Biology, 2014, v. 15, n. 7, p. R100, doi. 10.1186/gb-2014-15-8-r100
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- Publication type:
- Article
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors.
- Published in:
- Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r48
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- Publication type:
- Article
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets.
- Published in:
- Genome Biology, 2011, v. 12, n. 2, p. 1, doi. 10.1186/gb-2011-12-2-r15
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- Publication type:
- Article
Evaluation of commercially available small RNASeq library preparation kits using low input RNA.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4726-6
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- Publication type:
- Article
Discordant Expression of Circulating microRNA from Cellular and Extracellular Sources.
- Published in:
- PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0153691
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- Publication type:
- Article
The Reality of Pervasive Transcription.
- Published in:
- 2011
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- Publication type:
- Opinion
Comparative analysis of regulatory information and circuits across distant species.
- Published in:
- Nature, 2014, v. 512, n. 7515, p. 453, doi. 10.1038/nature13668
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- Publication type:
- Article
Comparative analysis of the transcriptome across distant species.
- Published in:
- Nature, 2014, v. 512, n. 7515, p. 445, doi. 10.1038/nature13424
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- Publication type:
- Article
Landscape of transcription in human cells.
- Published in:
- Nature, 2012, v. 489, n. 7414, p. 101, doi. 10.1038/nature11233
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- Publication type:
- Article
Architecture of the human regulatory network derived from ENCODE data.
- Published in:
- Nature, 2012, v. 489, n. 7414, p. 91, doi. 10.1038/nature11245
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- Publication type:
- Article
Assessing the need for sequence-based normalization in tiling microarray experiments.
- Published in:
- Bioinformatics, 2007, v. 23, n. 8, p. 988, doi. 10.1093/bioinformatics/btm052
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- Publication type:
- Article
A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
- Published in:
- Bioinformatics, 2006, v. 22, n. 24, p. 3016, doi. 10.1093/bioinformatics/btl515
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- Publication type:
- Article
Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop.
- Published in:
- Frontiers in Genetics, 2022, v. 12, p. 1, doi. 10.3389/fgene.2021.778416
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- Publication type:
- Article
Decoding neuroproteomics: integrating the genome, translatome and functional anatomy.
- Published in:
- Nature Neuroscience, 2014, v. 17, n. 11, p. 1491, doi. 10.1038/nn.3829
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- Publication type:
- Article
Structuring supplemental materials in support of reproducibility.
- Published in:
- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1205-3
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- Publication type:
- Article
Diverse Roles and Interactions of the SWI/SNF Chromatin Remodeling Complex Revealed Using Global Approaches.
- Published in:
- PLoS Genetics, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.pgen.1002008
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- Publication type:
- Article
Comparison and calibration of transcriptome datafrom RNA-Seq and tiling arrays.
- Published in:
- BMC Genomics, 2010, v. 11, p. 383, doi. 10.1186/1471-2164-11-383
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- Publication type:
- Article
VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.
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- Bioinformatics, 2012, v. 28, n. 17, p. 2267, doi. 10.1093/bioinformatics/bts368
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- Publication type:
- Article
ACT: aggregation and correlation toolbox for analyses of genome tracks.
- Published in:
- Bioinformatics, 2011, v. 27, n. 8, p. 1152, doi. 10.1093/bioinformatics/btr092
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- Publication type:
- Article
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 281, doi. 10.1093/bioinformatics/btq643
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- Publication type:
- Article