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TDP-43 proteinopathy alters the ribosome association of multiple mRNAs including the glypican Dally-like protein (Dlp)/GPC6.
Published in:
Acta Neuropathologica Communications, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40478-021-01148-z
By:
- Lehmkuhl, Erik M.;
- Loganathan, Suvithanandhini;
- Alsop, Eric;
- Blythe, Alexander D.;
- Kovalik, Tina;
- Mortimore, Nicholas P.;
- Barrameda, Dianne;
- Kueth, Chuol;
- Eck, Randall J.;
- Siddegowda, Bhavani B.;
- Joardar, Archi;
- Ball, Hannah;
- Macias, Maria E.;
- Bowser, Robert;
- Van Keuren-Jensen, Kendall;
- Zarnescu, Daniela C.
Publication type:
Article
Extracellular microRNAs in blood differentiate between ischaemic and haemorrhagic stroke subtypes.
Published in:
Journal of Extracellular Vesicles, 2020, v. 9, n. 1, p. 1, doi. 10.1080/20013078.2020.1713540
By:
- Kalani, M. Yashar S.;
- Alsop, Eric;
- Meechoovet, Bessie;
- Beecroft, Taylor;
- Agrawal, Komal;
- Whitsett, Timothy G.;
- Huentelman, Matthew J.;
- Spetzler, Robert F.;
- Nakaji, Peter;
- Kim, Seungchan;
- Van Keuren-Jensen, Kendall
Publication type:
Article
Extracellular microRNAs in blood differentiate between ischaemic and haemorrhagic stroke subtypes.
Published in:
Journal of Extracellular Vesicles, 2020, v. 9, n. 1, p. 1, doi. 10.1080/20013078.2020.1713540
By:
- Kalani, M. Yashar S.;
- Alsop, Eric;
- Meechoovet, Bessie;
- Beecroft, Taylor;
- Agrawal, Komal;
- Whitsett, Timothy G.;
- Huentelman, Matthew J.;
- Spetzler, Robert F.;
- Nakaji, Peter;
- Kim, Seungchan;
- Van Keuren‐Jensen, Kendall
Publication type:
Article
Microbial and Isotopic Evidence for Methane Cycling in Hydrocarbon-Containing Groundwater from the Pennsylvania Region.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00593
By:
- Vigneron, Adrien;
- Bishop, Andrew;
- Alsop, Eric B.;
- Hull, Kellie;
- Rhodes, Ileana;
- Hendricks, Robert;
- Head, Ian M.;
- Tsesmetzis, Nicolas
Publication type:
Article
Biological basis of extensive pleiotropy between blood traits and cancer risk.
Published in:
Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01294-8
By:
- Pardo-Cea, Miguel Angel;
- Farré, Xavier;
- Esteve, Anna;
- Palade, Joanna;
- Espín, Roderic;
- Mateo, Francesca;
- Alsop, Eric;
- Alorda, Marc;
- Blay, Natalia;
- Baiges, Alexandra;
- Shabbir, Arzoo;
- Comellas, Francesc;
- Gómez, Antonio;
- Arnan, Montserrat;
- Teulé, Alex;
- Salinas, Monica;
- Berrocal, Laura;
- Brunet, Joan;
- Rofes, Paula;
- Lázaro, Conxi
Publication type:
Article
Resolving Prokaryotic Taxonomy without rRNA: Longer Oligonucleotide Word Lengths Improve Genome and Metagenome Taxonomic Classification.
Published in:
PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0067337
By:
- Alsop, Eric B.;
- Raymond, Jason
Publication type:
Article
Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. e38108, doi. 10.1371/journal.pone.0038108
By:
- Swingley, Wesley D.;
- Meyer-Dombard, D’Arcy R.;
- Shock, Everett L.;
- Alsop, Eric B.;
- Falenski, Heinz D.;
- Havig, Jeff R.;
- Raymond, Jason
Publication type:
Article
Moderate intrinsic phenotypic alterations in C9orf72 ALS/FTD iPSC-microglia despite the presence of C9orf72 pathological features.
Published in:
Frontiers in Cellular Neuroscience, 2023, p. 1, doi. 10.3389/fncel.2023.1179796
By:
- Lorenzini, Ileana;
- Alsop, Eric;
- Levy, Jennifer;
- Gittings, Lauren M.;
- Lall, Deepti;
- Rabichow, Benjamin E.;
- Moore, Stephen;
- Pevey, Ryan;
- Bustos, Lynette M.;
- Burciu, Camelia;
- Bhatia, Divya;
- Singer, Mo;
- Saul, Justin;
- McQuade, Amanda;
- Tzioras, Makis;
- Mota, Thomas A.;
- Logemann, Amber;
- Rose, Jamie;
- Almeida, Sandra;
- Fen-Biao Gao
Publication type:
Article
MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay087
By:
- Marks, Peter C;
- Bigler, Marc;
- Alsop, Eric B;
- Vigneron, Adrien;
- Lomans, Bart P;
- Paula, Renato De;
- Geissler, Brett;
- Tsesmetzis, Nicolas
Publication type:
Article
Cryopreservation of cerebrospinal fluid cells preserves the transcriptional landscape for single-cell analysis.
Published in:
Journal of Neuroinflammation, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12974-024-03047-1
By:
- Kodali, Mahesh Chandra;
- Antone, Jerry;
- Alsop, Eric;
- Jayakumar, Rojashree;
- Parikh, Khushi;
- Chiot, Aude;
- Sanchez-Molina, Paula;
- Ajami, Bahareh;
- Arnold, Steven E.;
- Jensen, Kendall;
- Das, Sudeshna;
- Weinberg, Marc S.
Publication type:
Article
Modelling TDP-43 proteinopathy in Drosophila uncovers shared and neuron-specific targets across ALS and FTD relevant circuits.
Published in:
Acta Neuropathologica Communications, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40478-023-01656-0
By:
- Godfrey, R. Keating;
- Alsop, Eric;
- Bjork, Reed T.;
- Chauhan, Brijesh S.;
- Ruvalcaba, Hillary C.;
- Antone, Jerry;
- Gittings, Lauren M.;
- Michael, Allison F.;
- Williams, Christi;
- Hala'ufia, Grace;
- Blythe, Alexander D.;
- Hall, Megan;
- Sattler, Rita;
- Van Keuren-Jensen, Kendall;
- Zarnescu, Daniela C.
Publication type:
Article
Optimized electrostatic surfaces parallel increased thermostability: a structural bioinformatic analysis.
Published in:
Protein Engineering, 2003, v. 16, n. 12, p. 871, doi. 10.1093/protein/gzg131
By:
- Eric Alsop;
- Melanie Silver;
- Dennis R. Livesay
Publication type:
Article
Evaluation of commercially available small RNASeq library preparation kits using low input RNA.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4726-6
By:
- Yeri, Ashish;
- Courtright, Amanda;
- Danielson, Kirsty;
- Hutchins, Elizabeth;
- Alsop, Eric;
- Carlson, Elizabeth;
- Hsieh, Michael;
- Ziegler, Olivia;
- Das, Avash;
- Shah, Ravi V.;
- Rozowsky, Joel;
- Das, Saumya;
- Van Keuren-Jensen, Kendall
Publication type:
Article
Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution.
Published in:
BMC Ecology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1472-6785-14-16
By:
- Alsop, Eric B.;
- Boyd, Eric S.;
- Raymond, Jason
Publication type:
Article
Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum.
Published in:
Acta Neuropathologica, 2023, v. 146, n. 3, p. 433, doi. 10.1007/s00401-023-02599-5
By:
- Gittings, Lauren M.;
- Alsop, Eric B.;
- Antone, Jerry;
- Singer, Mo;
- Whitsett, Timothy G.;
- Sattler, Rita;
- Van Keuren-Jensen, Kendall
Publication type:
Article
Correction to: ADAR2 mislocalization and widespread RNA editing aberrations in C9orf72-mediated ALS/FTD.
Published in:
2019
By:
- Moore, Stephen;
- Alsop, Eric;
- Lorenzini, Ileana;
- Starr, Alexander;
- Rabichow, Benjamin E.;
- Mendez, Emily;
- Levy, Jennifer L.;
- Burciu, Camelia;
- Reiman, Rebecca;
- Chew, Jeannie;
- Belzil, Veronique V.;
- Dickson, Dennis;
- Robertson, Janice;
- Staats, Kim A.;
- Ichida, Justin K.;
- Petrucelli, Leonard;
- Van Keuren-Jensen, Kendall;
- Sattler, Rita
Publication type:
Correction Notice
ADAR2 mislocalization and widespread RNA editing aberrations in C9orf72-mediated ALS/FTD.
Published in:
Acta Neuropathologica, 2019, v. 138, n. 1, p. 49, doi. 10.1007/s00401-019-01999-w
By:
- Lorenzini, Ileana;
- Starr, Alexander;
- Rabichow, Benjamin E.;
- Mendez, Emily;
- Levy, Jennifer L.;
- Burciu, Camelia;
- Sattler, Rita;
- Moore, Stephen;
- Alsop, Eric;
- Reiman, Rebecca;
- Van Keuren-Jensen, Kendall;
- Chew, Jeannie;
- Belzil, Veronique V.;
- W. Dickson, Dennis;
- Petrucelli, Leonard;
- Robertson, Janice;
- Staats, Kim A.;
- Ichida, Justin K.
Publication type:
Article
Small RNA Changes in Plasma Have Potential for Early Diagnosis of Alzheimer's Disease before Symptom Onset.
Published in:
Cells (2073-4409), 2024, v. 13, n. 3, p. 207, doi. 10.3390/cells13030207
By:
- Palade, Joanna;
- Alsop, Eric;
- Courtright-Lim, Amanda;
- Hsieh, Michael;
- Whitsett, Timothy G.;
- Galasko, Douglas;
- Van Keuren-Jensen, Kendall
Publication type:
Article
Single cell transcriptomes and multiscale networks from persons with and without Alzheimer's disease.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49790-0
By:
- Wang, Qi;
- Antone, Jerry;
- Alsop, Eric;
- Reiman, Rebecca;
- Funk, Cory;
- Bendl, Jaroslav;
- Dudley, Joel T.;
- Liang, Winnie S.;
- Karr, Timothy L.;
- Roussos, Panos;
- Bennett, David A.;
- De Jager, Philip L.;
- Serrano, Geidy E.;
- Beach, Thomas G.;
- Van Keuren-Jensen, Kendall;
- Mastroeni, Diego;
- Reiman, Eric M.;
- Readhead, Benjamin P.
Publication type:
Article
Microbial evolution in extreme environments: microbial migration, genomic highways, and geochemical barriers in hydrothermal ecosystems.
Published in:
Environmental Systems Research, 2015, v. 4, n. 1, p. 1, doi. 10.1186/s40068-015-0038-x
By:
- Raymond, Jason;
- Alsop, Eric B.
Publication type:
Article
Microbial evolution in extreme environments: microbial migration, genomic highways, and geochemical barriers in hydrothermal ecosystems.
Published in:
Environmental Systems Research, 2015, v. 4, n. 1, p. 1, doi. 10.1186/s40068-015-0038-x
By:
- Raymond, Jason;
- Alsop, Eric
Publication type:
Article

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