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Evolutionary Insights from the Mitochondrial Genome of Oikopleura dioica: Sequencing Challenges, RNA Editing, Gene Transfers to the Nucleus, and tRNA Loss.
- Published in:
- Genome Biology & Evolution, 2024, v. 16, n. 9, p. 1, doi. 10.1093/gbe/evae181
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- Publication type:
- Article
Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2.
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- Molecular Biology & Evolution, 2021, v. 38, n. 6, p. 2547, doi. 10.1093/molbev/msab049
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- Publication type:
- Article
Complete mtDNA of Ciona intestinalis Reveals Extensive Gene Rearrangement and the Presence of an atp8 and an Extra trnM Gene in Ascidians.
- Published in:
- Journal of Molecular Evolution, 2004, v. 58, n. 4, p. 376, doi. 10.1007/s00239-003-2559-6
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- Publication type:
- Article
Evaluating the Efficiency of DNA Metabarcoding to Analyze the Diet of Hippocampus guttulatus (Teleostea: Syngnathidae).
- Published in:
- 2021
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- Publication type:
- Case Study
Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events.
- Published in:
- 2014
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- Publication type:
- Correction Notice
Ascidian Mitogenomics: Comparison of Evolutionary Rates in Closely Related Taxa Provides Evidence of Ongoing Speciation Events.
- Published in:
- Genome Biology & Evolution, 2014, v. 6, n. 3, p. 591, doi. 10.1093/gbe/evu041
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- Publication type:
- Article
Deep Sequencing of Mixed Total DNA without Barcodes Allows Efficient Assembly of Highly Plastic Ascidian Mitochondrial Genomes.
- Published in:
- Genome Biology & Evolution, 2013, v. 5, n. 6, p. 1185, doi. 10.1093/gbe/evt081
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- Publication type:
- Article
Against the flow: Integrated taxonomy and environmental suitability of a cold-water species dispersing to warmer waters.
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- Biological Invasions, 2024, v. 26, n. 4, p. 953, doi. 10.1007/s10530-023-03222-0
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- Publication type:
- Article
The influence of invasive jellyfish blooms on the aquatic microbiome in a coastal lagoon (Varano, SE Italy) detected by an Illumina-based deep sequencing strategy.
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- Biological Invasions, 2015, v. 17, n. 3, p. 923, doi. 10.1007/s10530-014-0810-2
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- Publication type:
- Article
Finding Aquaporins in Annelids: An Evolutionary Analysis and a Case Study.
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- Cells (2073-4409), 2021, v. 10, n. 12, p. 3562, doi. 10.3390/cells10123562
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- Publication type:
- Article
Extensive mitochondrial gene rearrangements in Ctenophora: insights from benthic Platyctenida.
- Published in:
- BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1186-1
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- Publication type:
- Article
Amplicon-Based Microbiome Profiling: From Second- to Third-Generation Sequencing for Higher Taxonomic Resolution.
- Published in:
- Genes, 2023, v. 14, n. 8, p. 1567, doi. 10.3390/genes14081567
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- Publication type:
- Article
Morphological evidence that the molecularly determined Ciona intestinalis type A and type B are different species: Ciona robusta and Ciona intestinalis.
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- Journal of Zoological Systematics & Evolutionary Research, 2015, v. 53, n. 3, p. 186, doi. 10.1111/jzs.12101
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- Publication type:
- Article
An unprecedented taxonomic revision of a model organism: the paradigmatic case of Ciona robusta and Ciona intestinalis.
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- Zoologica Scripta, 2017, v. 46, n. 5, p. 521, doi. 10.1111/zsc.12233
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- Publication type:
- Article
Bioinformatics in Italy: BITS2012, the ninth annual meeting of the Italian Society of Bioinformatics.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 7, p. 1, doi. 10.1186/1471-2105-14-S7-S1
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- Publication type:
- Article
The guinea-pig is not a rodent.
- Published in:
- Nature, 1996, v. 381, n. 6583, p. 597, doi. 10.1038/381597a0
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- Publication type:
- Article
Morphological Differences between Larvae of the Ciona intestinalis Species Complex: Hints for a Valid Taxonomic Definition of Distinct Species.
- Published in:
- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0122879
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- Publication type:
- Article
Tick-Box for 3'-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047538
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- Publication type:
- Article
The mitochondrial genome of Phallusia mammillata and Phallusia fumigata (Tunicata, Ascidiacea): high genome plasticity at intra-genus level.
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- BMC Evolutionary Biology, 2007, v. 7, p. 155, doi. 10.1186/1471-2148-7-155
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- Publication type:
- Article
The Gas family of proteins of Saccharomyces cerevisiae: characterization and evolutionary analysis.
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- Yeast, 2007, v. 24, n. 4, p. 297, doi. 10.1002/yea.1473
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- Publication type:
- Article
Hypervariability of Ascidian Mitochondrial Gene Order: Exposing the Myth of Deuterostome Organelle Genome Stability.
- Published in:
- Molecular Biology & Evolution, 2010, v. 27, n. 2, p. 211, doi. 10.1093/molbev/msp234
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- Publication type:
- Article
Phylogenetic Comparison of Huntingtin Homologues Reveals the Appearance of a Primitive polyQ in Sea Urchin.
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- Molecular Biology & Evolution, 2008, v. 25, n. 2, p. 330, doi. 10.1093/molbev/msm258
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- Publication type:
- Article
Congruent Mammalian Trees from Mitochondrial and Nuclear Genes Using Bayesian Methods.
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- Molecular Biology & Evolution, 2004, v. 21, n. 2, p. 397
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- Publication type:
- Article
Lineage-Specific Evolutionary Rate in Mammalian mtDNA.
- Published in:
- Molecular Biology & Evolution, 2000, v. 17, n. 7, p. 1022, doi. 10.1093/oxfordjournals.molbev.a026383
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- Publication type:
- Article
Where Do Rodents Fit? Evidence from the Complete Mitochondrial Genome of Sciurus vulgaris.
- Published in:
- Molecular Biology & Evolution, 2000, v. 17, n. 6, p. 979, doi. 10.1093/oxfordjournals.molbev.a026379
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- Publication type:
- Article
Phylogenomics and systematics of botryllid ascidians, and implications for the evolution of allorecognition.
- Published in:
- Frontiers in Ecology & Evolution, 2023, p. 1, doi. 10.3389/fevo.2023.1214191
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- Publication type:
- Article
An integrative taxonomic framework for the study of the genus Ciona (Ascidiacea) and description of a new species, Ciona intermedia.
- Published in:
- Zoological Journal of the Linnean Society, 2020, v. 190, n. 4, p. 1193, doi. 10.1093/zoolinnean/zlaa042
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- Publication type:
- Article
Toward a resolution of the cosmopolitan Botryllus schlosseri species complex (Ascidiacea, Styelidae): mitogenomics and morphology of clade E (Botryllus gaiae).
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- Zoological Journal of the Linnean Society, 2020, v. 190, n. 4, p. 1175, doi. 10.1093/zoolinnean/zlaa023
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- Publication type:
- Article
Detection of ribonucleotides embedded in DNA by Nanopore sequencing.
- Published in:
- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06077-w
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- Publication type:
- Article
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 616, doi. 10.1093/bib/bbaa297
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- Publication type:
- Article
An elongated COI fragment to discriminate botryllid species and as an improved ascidian DNA barcode.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83127-x
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- Publication type:
- Article
MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.
- Published in:
- Nucleic Acids Research, 2012, p. D1168, doi. 10.1093/nar/gkr1144
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- Publication type:
- Article
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs. Update 2002.
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- Nucleic Acids Research, 2002, v. 30, n. 1, p. 335, doi. 10.1093/nar/30.1.335
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- Publication type:
- Article
MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.
- Published in:
- Nucleic Acids Research, 2002, v. 30, n. 1, p. 172, doi. 10.1093/nar/30.1.172
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- Publication type:
- Article
HaploCoV: unsupervised classification and rapid detection of novel emerging variants of SARS-CoV-2.
- Published in:
- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04784-4
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- Publication type:
- Article
MitoNuc and MitoAln: two related databases of nuclear genes coding for mitochondrial proteins.
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- Nucleic Acids Research, 2000, v. 28, n. 1, p. 163, doi. 10.1093/nar/28.1.163
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- Publication type:
- Article
Assessment of orthologous splicing isoforms in human and mouse orthologous genes.
- Published in:
- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-534
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- Publication type:
- Article
Assessment of orthologous splicing isoforms in human and mouse orthologous genes.
- Published in:
- BMC Genomics, 2010, v. 11, p. 534, doi. 10.1186/1471-2164-11-534
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- Publication type:
- Article