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- Title
Systematic mining of analog series with related core structures in multi-target activity space.
- Authors
Gupta-Ostermann, Disha; Hu, Ye; Bajorath, Jürgen
- Abstract
We have aimed to systematically extract analog series with related core structures from multi-target activity space to explore target promiscuity of closely related analogous. Therefore, a previously introduced SAR matrix structure was adapted and further extended for large-scale data mining. These matrices organize analog series with related yet distinct core structures in a consistent manner. High-confidence compound activity data yielded more than 2,300 non-redundant matrices capturing 5,821 analog series that included 4,288 series with multi-target and 735 series with multi-family activities. Many matrices captured more than three analog series with activity against more than five targets. The matrices revealed a variety of promiscuity patterns. Compound series matrices also contain virtual compounds, which provide suggestions for compound design focusing on desired activity profiles.
- Subjects
DATA mining; ANALOG computer simulation; MATRICES (Mathematics); ANALOG data; BIOLOGICAL databases; MOLECULAR computers
- Publication
Journal of Computer-Aided Molecular Design, 2013, Vol 27, Issue 8, p665
- ISSN
0920-654X
- Publication type
Article
- DOI
10.1007/s10822-013-9671-5