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An integrated proteomics and metabolomics analysis of methylglyoxal-induced neurotoxicity in a human neuroblastoma cell line.
- Published in:
- NPJ Science of Food, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41538-024-00328-0
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- Article
Lipid and metabolite correlation networks specific to clinical and biochemical covariate show differences associated with sexual dimorphism in a cohort of nonagenarians.
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- GeroScience, 2022, v. 44, n. 2, p. 1109, doi. 10.1007/s11357-021-00404-3
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- Article
Multivariate modeling of the collaboration between Luigi Illica and Giuseppe Giacosa for the librettos of three operas by Giacomo Puccini.
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- Digital Scholarship in the Humanities, 2015, v. 30, n. 3, p. 405, doi. 10.1093/llc/fqu006
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- Publication type:
- Article
Discrimination of Lipogenic or Glucogenic Diet Effects in Early-Lactation Dairy Cows Using Plasma Metabolite Abundances and Ratios in Combination with Machine Learning.
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- Metabolites (2218-1989), 2024, v. 14, n. 4, p. 230, doi. 10.3390/metabo14040230
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- Article
Exploration of Blood Metabolite Signatures of Colorectal Cancer and Polyposis through Integrated Statistical and Network Analysis.
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- Metabolites (2218-1989), 2023, v. 13, n. 2, p. 296, doi. 10.3390/metabo13020296
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- Article
Exploration of Blood Lipoprotein and Lipid Fraction Profiles in Healthy Subjects through Integrated Univariate, Multivariate, and Network Analysis Reveals Association of Lipase Activity and Cholesterol Esterification with Sex and Age.
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- Metabolites (2218-1989), 2021, v. 11, n. 5, p. 326, doi. 10.3390/metabo11050326
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- Article
On the Use of Correlation and MI as a Measure of Metabolite—Metabolite Association for Network Differential Connectivity Analysis.
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- Metabolites (2218-1989), 2020, v. 10, n. 4, p. 171, doi. 10.3390/metabo10040171
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- Article
NMR Spectroscopy for Metabolomics Research.
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- Metabolites (2218-1989), 2019, v. 9, n. 7, p. 123, doi. 10.3390/metabo9070123
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- Article
Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling.
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- Metabolites (2218-1989), 2019, v. 9, n. 2, p. 28, doi. 10.3390/metabo9020028
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- Article
Cancers in Agreement? Exploring the Cross-Talk of Cancer Metabolomic and Transcriptomic Landscapes Using Publicly Available Data.
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- Cancers, 2021, v. 13, n. 3, p. 393, doi. 10.3390/cancers13030393
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- Article
Group‐wise partial least square regression.
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- Journal of Chemometrics, 2018, v. 32, n. 3, p. 1, doi. 10.1002/cem.2964
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- Publication type:
- Article
On the use of the observation-wise k-fold operation in PCA cross-validation.
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- Journal of Chemometrics, 2015, v. 29, n. 8, p. 467, doi. 10.1002/cem.2726
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- Publication type:
- Article
Covariances Simultaneous Component Analysis: a new method within a framework for modeling covariances.
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- Journal of Chemometrics, 2015, v. 29, n. 5, p. 277, doi. 10.1002/cem.2707
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- Publication type:
- Article
PortPred: Exploiting deep learning embeddings of amino acid sequences for the identification of transporter proteins and their substrates.
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- Journal of Cellular Biochemistry, 2023, v. 124, n. 11, p. 1803, doi. 10.1002/jcb.30490
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- Publication type:
- Article
Weight loss predictability by plasma metabolic signatures in adults with obesity and morbid obesity of the DiOGenes study.
- Published in:
- 2016
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- Publication type:
- journal article
The Power of Microbiome Studies: Some Considerations on Which Alpha and Beta Metrics to Use and How to Report Results.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2021.796025
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- Publication type:
- Article
Milk Metabolomics Data Reveal the Energy Balance of Individual Dairy Cows in Early Lactation.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34190-4
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- Article
Considering Horn's Parallel Analysis from a Random Matrix Theory Point of View.
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- Psychometrika, 2017, v. 82, n. 1, p. 186, doi. 10.1007/s11336-016-9515-z
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- Publication type:
- Article
Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07388-6
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- Article
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
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- Bioinformatics, 2018, v. 34, n. 8, p. 1401, doi. 10.1093/bioinformatics/btx767
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- Publication type:
- Article
Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-019-57247-4
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- Publication type:
- Article
Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00425
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- Publication type:
- Article
Patient's characteristics and outcomes in necrotising soft-tissue infections: results from a Scandinavian, multicentre, prospective cohort study.
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- 2019
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- Publication type:
- journal article
Intraspecies characterization of bacteria via evolutionary modeling of protein domains.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21036-3
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- Publication type:
- Article
The human milk proteome and allergy of mother and child: Exploring associations with protein abundances and protein network connectivity.
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- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.977470
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- Publication type:
- Article
Tracy-Widom statistic for the largest eigenvalue of autoscaled real matrices.
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- Journal of Chemometrics, 2011, v. 25, n. 12, p. 644, doi. 10.1002/cem.1411
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- Publication type:
- Article
Disease Activity Patterns of Crohn's Disease in the First Ten Years After Diagnosis in the Population-based IBD South Limburg Cohort.
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- Journal of Crohn's & Colitis, 2021, v. 15, n. 3, p. 391, doi. 10.1093/ecco-jcc/jjaa173
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- Publication type:
- Article
Group-wise ANOVA simultaneous component analysis for designed omics experiments.
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- Metabolomics, 2018, v. 14, n. 6, p. 1, doi. 10.1007/s11306-018-1369-1
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- Article
From correlation to causation: analysis of metabolomics data using systems biology approaches.
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- Metabolomics, 2018, v. 14, n. 4, p. 1, doi. 10.1007/s11306-018-1335-y
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- Publication type:
- Article
Recommended strategies for spectral processing and post-processing of 1D <sup>1</sup>H-NMR data of biofluids with a particular focus on urine.
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- Metabolomics, 2018, v. 14, n. 3, p. 0, doi. 10.1007/s11306-018-1321-4
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- Article
Reflections on univariate and multivariate analysis of metabolomics data.
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- Metabolomics, 2014, v. 10, n. 3, p. 361, doi. 10.1007/s11306-013-0598-6
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- Publication type:
- Article
Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies.
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- Metabolomics, 2012, v. 8, p. 3, doi. 10.1007/s11306-011-0330-3
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- Publication type:
- Article
In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions.
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- Microbial Cell Factories, 2019, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12934-019-1227-5
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- Publication type:
- Article
Discriminatory plasma biomarkers predict specific clinical phenotypes of necrotizing soft-tissue infections.
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- 2021
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- Publication type:
- journal article
Author Correction: Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models.
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- 2023
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- Publication type:
- Correction Notice
The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00092
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- Publication type:
- Article
A gentle introduction to principal component analysis using tea‐pots, dinosaurs, and pizza.
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- Teaching Statistics, 2024, v. 46, n. 1, p. 38, doi. 10.1111/test.12363
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- Article
Strategies for Individual Phenotyping of Linoleic and Arachidonic Acid Metabolism Using an Oral Glucose Tolerance Test.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119856
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- Publication type:
- Article
Of Monkeys and Men: A Metabolomic Analysis of Static and Dynamic Urinary Metabolic Phenotypes in Two Species.
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- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106077
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- Publication type:
- Article
Simplivariate Models: Uncovering the Underlying Biology in Functional Genomics Data.
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- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020747
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- Publication type:
- Article
Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol.
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- Environmental Microbiology, 2017, v. 19, n. 3, p. 968, doi. 10.1111/1462-2920.13531
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- Publication type:
- Article
A Metabolomic Perspective on Coeliac Disease.
- Published in:
- 2014
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- Publication type:
- Journal Article
A Metabolomic Perspective on Coeliac Disease.
- Published in:
- Autoimmune Diseases (2090-0422), 2014, p. 1, doi. 10.1155/2014/756138
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- Publication type:
- Article
The war of tools: how can NMR spectroscopists detect errors in their structures?
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- Journal of Biomolecular NMR, 2008, v. 40, n. 4, p. 251, doi. 10.1007/s10858-008-9228-4
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- Publication type:
- Article
Age- and Sex-Dependent Changes of Free Circulating Blood Metabolite and Lipid Abundances, Correlations, and Ratios.
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- 2022
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- Publication type:
- journal article
Editorial: Education in systems biology 2022.
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- Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1176588
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- Publication type:
- Article
What can go wrong when observations are not independently and identically distributed: A cautionary note on calculating correlations on combined data sets from different experiments or conditions.
- Published in:
- Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1042156
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- Publication type:
- Article
Research-driven education: An introductory course to systems and synthetic biology.
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- Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.981800
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- Publication type:
- Article
Designing interpretable deep learning applications for functional genomics: a quantitative analysis.
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- Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae449
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- Publication type:
- Article
In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins.
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 12, p. 6409, doi. 10.3390/ijms22126409
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- Publication type:
- Article