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A Genome-Wide Functional Screen Identifies Enhancer and Protective Genes for Amyloid Beta-Peptide Toxicity.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 1278, doi. 10.3390/ijms24021278
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- Article
Alterations in vaginal microbiota among pregnant women with COVID‐19.
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- Journal of Medical Virology, 2023, v. 95, n. 1, p. 1, doi. 10.1002/jmv.28132
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- Publication type:
- Article
Membrane-associated Ras dimers are isoform-specific: K-Ras dimers differ from H-Ras dimers.
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- Biochemical Journal, 2016, v. 473, n. 12, p. 1719, doi. 10.1042/BCJ20160031
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- Publication type:
- Article
PRISM: a web server and repository for prediction of protein–protein interactions and modeling their 3D complexes.
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- Nucleic Acids Research, 2014, v. 42, n. W1, p. W285, doi. 10.1093/nar/gku397
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- Publication type:
- Article
HotRegion: a database of predicted hot spot clusters.
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- Nucleic Acids Research, 2012, p. D829, doi. 10.1093/nar/gkr929
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- Publication type:
- Article
HotPoint: hot spot prediction server for protein interfaces.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W402, doi. 10.1093/nar/gkq323
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- Publication type:
- Article
HotSprint: database of computational hot spots in protein interfaces.
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- Nucleic Acids Research, 2008, v. 36, p. D662
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- Publication type:
- Article
A NOVEL ECONOMIC-BASED SCHEDULING HEURISTIC FOR COMPUTATIONAL GRIDS.
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- International Journal of High Performance Computing Applications, 2007, v. 21, n. 1, p. 21, doi. 10.1177/1094342006074849
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- Publication type:
- Article
NAMD: a Parallel, Object-Oriented Molecular Dynamics Program.
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- International Journal of High Performance Computing Applications, 1996, v. 10, n. 4, p. 251, doi. 10.1177/109434209601000401
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- Publication type:
- Article
HMI-PRED 2.0: a biologist-oriented web application for prediction of host–microbe protein–protein interaction by interface mimicry.
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- Bioinformatics, 2022, v. 38, n. 21, p. 4962, doi. 10.1093/bioinformatics/btac633
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- Publication type:
- Article
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2–human mimicry and interactions.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1455, doi. 10.1093/bioinformatics/btab799
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- Publication type:
- Article
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.
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- Briefings in Bioinformatics, 2009, v. 10, n. 3, p. 217, doi. 10.1093/bib/bbp001
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- Publication type:
- Article
The Architecture of the TIR Domain Signalosome in the Toll-like Receptor-4 Signaling Pathway.
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- Scientific Reports, 2015, p. 13128, doi. 10.1038/srep13128
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- Publication type:
- Article
Non-Redundant Unique Interface Structures as Templates for Modeling Protein Interactions.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086738
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- Publication type:
- Article
Integrating Structure to Protein-Protein Interaction Networks That Drive Metastasis to Brain and Lung in Breast Cancer.
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0081035
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- Publication type:
- Article
A Detailed Modular Analysis of Heat-Shock Protein Dynamics under Acute and Chronic Stress and Its Implication in Anxiety Disorders.
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- PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042958
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- Publication type:
- Article
A Comparative Molecular Dynamics Study of Methylation State Specificity of JMJD2A.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024664
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- Publication type:
- Article
Molecular Recognition of H3/H4 Histone Tails by the Tudor Domains of JMJD2A: A Comparative Molecular Dynamics Simulations Study.
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- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0014765
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- Publication type:
- Article
VitAL: Viterbi Algorithm for de novo Peptide Design.
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- PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0010926
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- Publication type:
- Article
Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement.
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- Proteins, 2012, v. 80, n. 4, p. 1239, doi. 10.1002/prot.24022
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- Article
Analysis and network representation of hotspots in protein interfaces using minimum cut trees.
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- Proteins, 2010, v. 78, n. 10, p. 2283, doi. 10.1002/prot.22741
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- Publication type:
- Article
Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.
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- Proteins, 2007, v. 66, n. 1, p. 29, doi. 10.1002/prot.21206
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- Publication type:
- Article
Structural Pathways of Cytokines May Illuminate Their Roles in Regulation of Cancer Development and Immunotherapy.
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- Cancers, 2014, v. 6, n. 2, p. 663, doi. 10.3390/cancers6020663
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- Article
Interactome analysis of Bag-1 isoforms reveals novel interaction partners in endoplasmic reticulum-associated degradation.
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- PLoS ONE, 2021, v. 16, n. 8, p. 1, doi. 10.1371/journal.pone.0256640
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- Article
Interaction prediction and classification of PDZdomains.
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- BMC Bioinformatics, 2010, v. 11, p. 357, doi. 10.1186/1471-2105-11-357
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- Publication type:
- Article
Cryptochrome deletion in p53 mutant mice enhances apoptotic and anti-tumorigenic responses to UV damage at the transcriptome level.
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- Functional & Integrative Genomics, 2019, v. 19, n. 5, p. 729, doi. 10.1007/s10142-019-00680-5
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- Article
The vaginal microbiome composition during pregnancy in a region compromising different ethnic origins.
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- Archives of Gynecology & Obstetrics, 2024, v. 310, n. 1, p. 369, doi. 10.1007/s00404-024-07560-9
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- Publication type:
- Article
PRISM: protein interactions by structural matching.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w331, doi. 10.1093/nar/gki585
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- Publication type:
- Article
Beyond the heterodimer model for mineralocorticoid and glucocorticoid receptor interactions in nuclei and at DNA.
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- PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0227520
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- Publication type:
- Article
Dysbiosis in pregnant mice induced by transfer of human vaginal microbiota followed by reversal of pathological changes in the uterus and placenta via progesterone treatment.
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- BMC Pregnancy & Childbirth, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12884-024-06595-9
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- Publication type:
- Article
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer.
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- PLoS Computational Biology, 2014, v. 10, n. 2, p. 1, doi. 10.1371/journal.pcbi.1003470
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- Article
Human Cancer Protein-Protein Interaction Network: A Structural Perspective.
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- PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000601
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- Article
Structural coverage of the human interactome.
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- Briefings in Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1093/bib/bbad496
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- Article
<italic>PRISM‐EM</italic>: template interface‐based modelling of multi‐protein complexes guided by cryo‐electron microscopy density maps. Corrigendum.
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- 2018
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- Correction Notice
PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps.
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- Acta Crystallographica: Section D, Structural Biology, 2016, v. 72, n. 10, p. 1137, doi. 10.1107/S2059798316013541
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- Article
PHR: A Parallel Hierarchical Radiosity System with Dynamic Load Balancing.
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- Journal of Supercomputing, 2005, v. 31, n. 3, p. 249, doi. 10.1007/s11227-005-0107-4
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- Article
Prediction of protein–protein interactions by combining structure and sequence conservation in protein interfaces.
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- Bioinformatics, 2005, v. 21, n. 12, p. 2850
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- Publication type:
- Article
Neuropsychiatric Symptoms of COVID-19 Explained by SARS-CoV-2 Proteins' Mimicry of Human Protein Interactions.
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- Frontiers in Human Neuroscience, 2021, v. 15, p. N.PAG, doi. 10.3389/fnhum.2021.656313
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- Article
Structural cooperativity in histone H3 tail modifications.
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- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 12, p. 1982, doi. 10.1002/pro.745
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- Publication type:
- Article
The structural network of Interleukin-10 and its implications in inflammation and cancer.
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- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S4-S2
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- Publication type:
- Article
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients.
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- PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1006789
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- Publication type:
- Article
Analysis of Hot Region Organization in Hub Proteins.
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- Annals of Biomedical Engineering, 2010, v. 38, n. 6, p. 2068, doi. 10.1007/s10439-010-0048-9
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- Publication type:
- Article
Analysis of single amino acid variations in singlet hot spots of protein–protein interfaces.
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- Bioinformatics, 2018, v. 34, n. 17, p. i795, doi. 10.1093/bioinformatics/bty569
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- Publication type:
- Article
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
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- Bioinformatics, 2009, v. 25, n. 12, p. 1513, doi. 10.1093/bioinformatics/btp240
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- Publication type:
- Article
Identification of interconnected markers for T-cell acute lymphoblastic leukemia.
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- 2013
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- Publication type:
- Journal Article
Identification of Interconnected Markers for T-Cell Acute Lymphoblastic Leukemia.
- Published in:
- BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/210253
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- Publication type:
- Article
Conformational diversity and protein–protein interfaces in drug repurposing in Ras signaling pathway.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-023-50913-8
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- Publication type:
- Article
Androgen receptor-binding sites are highly mutated in prostate cancer.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14644-y
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- Publication type:
- Article
Transient protein–protein interactions.
- Published in:
- PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 9, p. 635, doi. 10.1093/protein/gzr025
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- Article
Structural and functional analysis of perforin mutations in association with clinical data of familial hemophagocytic lymphohistiocytosis type 2 (FHL2) patients.
- Published in:
- Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 6, p. 823, doi. 10.1002/pro.2265
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- Publication type:
- Article