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gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D637, doi. 10.1093/nar/gky1008
By:
- Shi, Wenyu;
- Qi, Heyuan;
- Sun, Qinglan;
- Fan, Guomei;
- Liu, Shuangjiang;
- Wang, Jun;
- Zhu, Baoli;
- Liu, Hongwei;
- Zhao, Fangqing;
- Wang, Xiaochen;
- Hu, Xiaoxuan;
- Li, Wei;
- Liu, Jia;
- Tian, Ye;
- Wu, Linhuan;
- Ma, Juncai
Publication type:
Article
World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D611, doi. 10.1093/nar/gkw903
By:
- Linhuan Wu;
- Qinglan Sun;
- Desmeth, Philippe;
- Hideaki Sugawara;
- Zhenghong Xu;
- McCluskey, Kevin;
- Smith, David;
- Alexander, Vasilenko;
- Lima, Nelson;
- Ohkuma, Moriya;
- Robert, Vincent;
- Yuguang Zhou;
- Jianhui Li;
- Guomei Fan;
- Ingsriswang, Supawadee;
- Ozerskaya, Svetlana;
- Ma, Juncai
Publication type:
Article
Computational predicting the human infectivity of H7N9 influenza viruses isolated from avian hosts.
Published in:
Transboundary & Emerging Diseases, 2021, v. 68, n. 2, p. 846, doi. 10.1111/tbed.13750
By:
- Sun, Yeping;
- Zhang, Kun;
- Qi, Heyuan;
- Zhang, He;
- Zhang, Shuang;
- Bi, Yuhai;
- Wu, Linhuan;
- Sun, Lei;
- Qi, Jianxun;
- Liu, Di;
- Ma, Juncai;
- Tien, Po;
- Liu, Wenjun;
- Li, Jing
Publication type:
Article
Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012).
Published in:
2012
By:
- Tuama, Éamonn Ó.;
- Deck, John;
- Dröge, Gabriel;
- Döring, Markus;
- Field, Dawn;
- Kottmann, Renzo;
- Juncai Ma;
- Hiroshi Mori;
- Morrison, Norman;
- Sterk, Peter;
- Hideaki Sugawara;
- Wieczorek, John;
- Linhuan Wu;
- Pelin Yilmaz
Publication type:
Proceeding
The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.
Published in:
GigaScience, 2018, v. 7, n. 5, p. N.PAG, doi. 10.1093/gigascience/giy026
By:
- Wu, Linhuan;
- McCluskey, Kevin;
- Desmeth, Philippe;
- Liu, Shuangjiang;
- Hideaki, Sugawara;
- Yin, Ye;
- Moriya, Ohkuma;
- Itoh, Takashi;
- Kim, Cha Young;
- Lee, Jung-Sook
Publication type:
Article
Structural basis for receptor binding and broader interspecies receptor recognition of currently circulating Omicron sub-variants.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39942-z
By:
- Zhao, Zhennan;
- Xie, Yufeng;
- Bai, Bin;
- Luo, Chunliang;
- Zhou, Jingya;
- Li, Weiwei;
- Meng, Yumin;
- Li, Linjie;
- Li, Dedong;
- Li, Xiaomei;
- Li, Xiaoxiong;
- Wang, Xiaoyun;
- Sun, Junqing;
- Xu, Zepeng;
- Sun, Yeping;
- Zhang, Wei;
- Fan, Zheng;
- Zhao, Xin;
- Wu, Linhuan;
- Ma, Juncai
Publication type:
Article
Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China.
Published in:
Annals of Clinical Microbiology & Antimicrobials, 2024, v. 23, n. 1, p. 1, doi. 10.1186/s12941-024-00689-0
By:
- Wang, Ziran;
- Liu, Danping;
- Zhang, Jingjia;
- Liu, Lingli;
- Zhang, Zeming;
- Liu, Chang;
- Hu, Songnian;
- Wu, Linhuan;
- He, Zilong;
- Sun, Hongli
Publication type:
Article
Data‐Driven Engineering of Phages with Tunable Capsule Tropism for Klebsiella pneumoniae.
Published in:
Advanced Science, 2024, v. 11, n. 33, p. 1, doi. 10.1002/advs.202309972
By:
- Wang, Chao;
- Wang, Shiwei;
- Jing, Shisong;
- Zeng, Yuan;
- Yang, Lili;
- Mu, Yongqi;
- Ding, Zixuan;
- Song, Yuqin;
- Sun, Yanmei;
- Zhang, Gang;
- Wei, Dawei;
- Li, Ming;
- Ma, Yingfei;
- Zhou, Haijian;
- Wu, Linhuan;
- Feng, Jie
Publication type:
Article
Allobacillus salarius sp. nov., and Allobacillus saliphilus sp. nov., isolated from shrimp paste (ka-pi) in Thailand.
Published in:
Archives of Microbiology, 2022, v. 204, n. 1, p. 1, doi. 10.1007/s00203-021-02694-9
By:
- Yiamsombut, Supalurk;
- Kanchanasin, Pawina;
- Phongsopitanun, Wongsakorn;
- Kuncharoen, Nattakorn;
- Savarajara, Ancharida;
- Shi, Wenyu;
- Wu, Linhuan;
- Ma, Juncai;
- Tanasupawat, Somboon
Publication type:
Article
Correction: Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01370-4
By:
- Liu, Chang;
- Du, Meng-Xuan;
- Abuduaini, Rexiding;
- Yu, Hai-Ying;
- Li, Dan-Hua;
- Wang, Yu-Jing;
- Zhou, Nan;
- Jiang, Min-Zhi;
- Niu, Peng-Xia;
- Han, Shan-Shan;
- Chen, Hong-He;
- Shi, Wen-Yu;
- Wu, Linhuan;
- Xin, Yu-Hua;
- Ma, Juncai;
- Zhou, Yuguang;
- Jiang, Cheng-Ying;
- Liu, Hong-Wei;
- Liu, Shuang-Jiang
Publication type:
Article
A database of glacier microbiomes for the Three Poles.
Published in:
Earth System Science Data Discussions, 2023, p. 1, doi. 10.5194/essd-2023-395
By:
- Yongqin Liu;
- Songnian Hu;
- Tao Yu;
- Yingfeng Luo;
- Zhihao Zhang;
- Yuying Chen;
- Shunchao Guo;
- Qinglan Sun;
- Guomei Fan;
- Linhuan Wu;
- Juncai Ma;
- Keshao Liu;
- Pengfei Liu;
- Junzhi Liu;
- Mukan Ji
Publication type:
Article
Ancylobacter moscoviensis sp. nov., novel facultatively methylotrophic bacteria from activated sludge and the reclassification of Starkeya novella (Starkey 1934) Kelly et al. 2000 as Ancylobacter novellus comb. nov., Starkeya koreensis Im et al. 2006 as Ancylobacter koreensis comb.nov., Angulomicrobium tetraedrale Vasil'eva et al. 1986 as Ancylobacter tetraedralis comb. nov., Angulomicrobium amanitiforme Fritz et al. 2004 as Ancylobacter amanitiformis comb. nov., and Methylorhabdus multivorans Doronina et al. 1996 as Ancylobacter multivorans comb. nov., and emended description of the genus Ancylobacter
Published in:
Antonie van Leeuwenhoek, 2023, v. 116, n. 2, p. 153, doi. 10.1007/s10482-022-01788-8
By:
- Doronina, Nina V.;
- Chemodurova, Alina A.;
- Grouzdev, Denis S.;
- Koziaeva, Veronika V.;
- Agafonova, Nadezhda V.;
- Shi, Wenyu;
- Wu, Linhuan;
- Kaparullina, Elena N.
Publication type:
Article
VarEPS-Influ:an risk evaluation system of occurred and virtual variations of influenza virus genomes.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D798, doi. 10.1093/nar/gkad912
By:
- Shu, Chang;
- Sun, Qinglan;
- Fan, Guomei;
- Peng, Kesheng;
- Yu, Zhengfei;
- Luo, Yingfeng;
- Gao, Shenghan;
- Ma, Juncai;
- Deng, Tao;
- Hu, Songnian;
- Wu, Linhuan
Publication type:
Article
gcPathogen: a comprehensive genomic resource of human pathogens for public health.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D714, doi. 10.1093/nar/gkad875
By:
- Guo, Chongye;
- Chen, Qi;
- Fan, Guomei;
- Sun, Yan;
- Nie, Jingyi;
- Shen, Zhihong;
- Meng, Zhen;
- Zhou, Yuanchun;
- Li, Shiwen;
- Wang, Shuai;
- Ma, Juncai;
- Sun, Qinglan;
- Wu, Linhuan
Publication type:
Article
Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D708, doi. 10.1093/nar/gkac926
By:
- Wang, Fang;
- Wang, Ke;
- Cai, Lei;
- Zhao, Mingjun;
- Kirk, Paul M;
- Fan, Guomei;
- Sun, Qinglan;
- Li, Bo;
- Wang, Shuai;
- Yu, Zhengfei;
- Han, Dong;
- Ma, Juncai;
- Wu, Linhuan;
- Yao, Yijian
Publication type:
Article
VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D888, doi. 10.1093/nar/gkab921
By:
- Sun, Qinglan;
- Shu, Chang;
- Shi, Wenyu;
- Luo, Yingfeng;
- Fan, Guomei;
- Nie, Jingyi;
- Bi, Yuhai;
- Wang, Qihui;
- Qi, Jianxun;
- Lu, Jian;
- Zhou, Yuanchun;
- Shen, Zhihong;
- Meng, Zhen;
- Zhang, Xinjiao;
- Yu, Zhengfei;
- Gao, Shenghan;
- Wu, Linhuan;
- Ma, Juncai;
- Hu, Songnian
Publication type:
Article
Genetic tracing of HCoV-19 for the re-emerging outbreak of COVID-19 in Beijing, China.
Published in:
Protein & Cell, 2021, v. 12, n. 1, p. 4, doi. 10.1007/s13238-020-00772-0
By:
- Yang, Jing;
- Niu, Peihua;
- Chen, Lijuan;
- Wang, Liang;
- Zhao, Li;
- Huang, Baoying;
- Ma, Juncai;
- Hu, Songnian;
- Wu, Linhuan;
- Wu, Guizhen;
- Huang, Chun;
- Bi, Yuhai;
- Tan, Wenjie
Publication type:
Article
Global catalogue of microorganisms (gcm): a comprehensive database and information retrieval, analysis, and visualization system for microbial resources.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-933
By:
- Linhuan Wu;
- Qinglan Sun;
- Hideaki Sugawara;
- Song Yang;
- Yuguang Zhou;
- McCluskey, Kevin;
- Vasilenko, Alexander;
- Ken-Ichiro Ken-Ichiro Suzuki;
- Moriya Ohkuma;
- Yeonhee Lee;
- Robert, Vincent;
- Supawadee Ingsriswang;
- Guissart, François;
- Philippe, Desmeth;
- Juncai Ma
Publication type:
Article
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01064-3
By:
- Liu, Chang;
- Du, Meng-Xuan;
- Abuduaini, Rexiding;
- Yu, Hai-Ying;
- Li, Dan-Hua;
- Wang, Yu-Jing;
- Zhou, Nan;
- Jiang, Min-Zhi;
- Niu, Peng-Xia;
- Han, Shan-Shan;
- Chen, Hong-He;
- Shi, Wen-Yu;
- Wu, Linhuan;
- Xin, Yu-Hua;
- Ma, Juncai;
- Zhou, Yuguang;
- Jiang, Cheng-Ying;
- Liu, Hong-Wei;
- Liu, Shuang-Jiang
Publication type:
Article
The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-13836-5
By:
- Liu, Chang;
- Zhou, Nan;
- Du, Meng-Xuan;
- Sun, Yu-Tong;
- Wang, Kai;
- Wang, Yu-Jing;
- Li, Dan-Hua;
- Yu, Hai-Ying;
- Song, Yuqin;
- Bai, Bing-Bing;
- Xin, Yuhua;
- Wu, Linhuan;
- Jiang, Cheng-Ying;
- Feng, Jie;
- Xiang, Hua;
- Zhou, Yuguang;
- Ma, Juncai;
- Wang, Jun;
- Liu, Hong-Wei;
- Liu, Shuang-Jiang
Publication type:
Article

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