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Correction to: Piphillin predicts metagenomic composition and dynamics from DADA2- corrected 16S rDNA sequences.
Published in:
2020
By:
- Narayan, Nicole R.;
- Weinmaier, Thomas;
- Laserna-Mendieta, Emilio J.;
- Claesson, Marcus J.;
- Shanahan, Fergus;
- Dabbagh, Karim;
- Iwai, Shoko;
- DeSantis, Todd Z.
Publication type:
Correction Notice
Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-019-6427-1
By:
- Narayan, Nicole R.;
- Weinmaier, Thomas;
- Laserna-Mendieta, Emilio J.;
- Claesson, Marcus J.;
- Shanahan, Fergus;
- Dabbagh, Karim;
- Iwai, Shoko;
- DeSantis, Todd Z.
Publication type:
Article
Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21327-9
By:
- West, Kiana A.;
- Yin, Xiaochen;
- Rutherford, Erica M.;
- Wee, Brendan;
- Choi, Jinlyung;
- Chrisman, Brianna S.;
- Dunlap, Kaiti L.;
- Hannibal, Roberta L.;
- Hartono, Wiputra;
- Lin, Michelle;
- Raack, Edward;
- Sabino, Kayleen;
- Wu, Yonggan;
- Wall, Dennis P.;
- David, Maude M.;
- Dabbagh, Karim;
- DeSantis, Todd Z.;
- Iwai, Shoko
Publication type:
Article
Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21327-9
By:
- West, Kiana A.;
- Yin, Xiaochen;
- Rutherford, Erica M.;
- Wee, Brendan;
- Choi, Jinlyung;
- Chrisman, Brianna S.;
- Dunlap, Kaiti L.;
- Hannibal, Roberta L.;
- Hartono, Wiputra;
- Lin, Michelle;
- Raack, Edward;
- Sabino, Kayleen;
- Wu, Yonggan;
- Wall, Dennis P.;
- David, Maude M.;
- Dabbagh, Karim;
- DeSantis, Todd Z.;
- Iwai, Shoko
Publication type:
Article
Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 2, p. 279, doi. 10.1038/ismej.2009.104
By:
- Shoko Iwai;
- Benli Chai;
- Woo Jun Sul;
- Cole, James R.;
- Hashsham, Syed A.;
- Tiedje, James M.
Publication type:
Article
Development of a 60-mer oligonucleotide microarray on the basis of benzene monooxygenase gene diversity.
Published in:
Applied Microbiology & Biotechnology, 2007, v. 75, n. 4, p. 929, doi. 10.1007/s00253-007-0877-0
By:
- Iwai, Shoko;
- Kurisu, Futoshi;
- Urakawa, Hidetoshi;
- Yagi, Osami;
- Furumai, Hiroaki
Publication type:
Article
Strain level and comprehensive microbiome analysis in inflammatory bowel disease via multi-technology meta-analysis identifies key bacterial influencers of disease.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 01, doi. 10.3389/fmicb.2022.961020
By:
- Ravichandar, Jayamary Divya;
- Rutherford, Erica;
- Chow, Cheryl-Emiliane T.;
- Han, Andrew;
- Mitsuko Lynn Yamamoto;
- Narayan, Nicole;
- Kaplan, Gilaad G.;
- Beck, Paul L.;
- Claesson, Marcus J.;
- Dabbagh, Karim;
- Shoko Iwai;
- DeSantis, Todd Z.
Publication type:
Article
The Lung Microbiome of Ugandan HIV-Infected Pneumonia Patients Is Compositionally and Functionally Distinct from That of San Franciscan Patients.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095726
By:
- Iwai, Shoko;
- Huang, Delphine;
- Fong, Serena;
- Jarlsberg, Leah G.;
- Worodria, William;
- Yoo, Samuel;
- Cattamanchi, Adithya;
- Davis, J. Lucian;
- Kaswabuli, Sylvia;
- Segal, Mark;
- Huang, Laurence;
- Lynch, Susan V.
Publication type:
Article
Immune Response and Mortality Risk Relate to Distinct Lung Microbiomes in Patients with HIV and Pneumonia.
Published in:
2017
By:
- Shenoy, Meera K.;
- Iwai, Shoko;
- Lin, Din L.;
- Worodria, William;
- Ayakaka, Irene;
- Byanyima, Patrick;
- Kaswabuli, Sylvia;
- Fong, Serena;
- Stone, Stephen;
- Chang, Emily;
- Davis, J. Lucian;
- Faruqi, Ali Ahmad;
- Segal, Mark R.;
- Huang, Laurence;
- Lynch, Susan V.
Publication type:
journal article
Degradation of Mono-chlorinated Dibenzo- p-Dioxins by Janibacter sp. Strain YA Isolated from River Sediment.
Published in:
Current Microbiology, 2005, v. 51, n. 5, p. 353, doi. 10.1007/s00284-005-0099-6
By:
- Iwai, Shoko;
- Yamazoe, Atsushi;
- Takahashi, Ryosuke;
- Kurisu, Futoshi;
- Yagi, Osami
Publication type:
Article
Prevalence of depressive symptoms in Japanese male patients with chronic obstructive pulmonary disease.
Published in:
Psychiatry & Clinical Neurosciences, 2011, v. 65, n. 1, p. 82, doi. 10.1111/j.1440-1819.2010.02171.x
By:
- Hayashi, Yoshika;
- Senjyu, Hideaki;
- Iguchi, Asuka;
- Iwai, Shoko;
- Kanada, Rumi;
- Honda, Sumihisa;
- Ozawa, Hiroki
Publication type:
Article
Dysbiosis of the Gut Microbiota Is Associated with HIV Disease Progression and Tryptophan Catabolism.
Published in:
Science Translational Medicine, 2013, v. 5, n. 193, p. 1, doi. 10.1126/scitranslmed.3006438
By:
- Vujkovic-Cvijin, Ivan;
- Dunham, Richard M.;
- Iwai, Shoko;
- Maher, Michael C.;
- Albright, Rebecca G.;
- Broadhurst, Mara J.;
- Hernandez, Ryan D.;
- Lederman, Michael M.;
- Yong Huang;
- Ma Somsouk;
- Deeks, Steven G.;
- Hunt, Peter W.;
- Lynch, Susan V.;
- McCune, Joseph M.
Publication type:
Article
Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes.
Published in:
PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166104
By:
- Iwai, Shoko;
- Weinmaier, Thomas;
- Schmidt, Brian L.;
- Albertson, Donna G.;
- Poloso, Neil J.;
- Dabbagh, Karim;
- DeSantis, Todd Z.
Publication type:
Article
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay.
Published in:
PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157008
By:
- Chai, Benli;
- Tsoi, Tamara V.;
- Iwai, Shoko;
- Liu, Cun;
- Fish, Jordan A.;
- Gu, Cheng;
- Johnson, Timothy A.;
- Zylstra, Gerben;
- Teppen, Brian J.;
- Li, Hui;
- Hashsham, Syed A.;
- Boyd, Stephen A.;
- Cole, James R.;
- Tiedje, James M.
Publication type:
Article
Relationship Between Depression in Patients With COPD and the Percent of Predicted FEV<sub>1</sub>, BODE Index, and Health-Related Quality of Life.
Published in:
Respiratory Care, 2013, v. 58, n. 2, p. 334, doi. 10.4187/respcare.01844
By:
- Asuka Iguchi;
- Hideaki Senjyu;
- Yoshika Hayashi;
- Rumi Kanada;
- Shoko Iwai;
- Sumihisa Honda;
- Chika Kitagawa;
- Hiroki Ozawa;
- Naoto Rikitomi
Publication type:
Article
A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.595910
By:
- Yin, Xiaochen;
- Altman, Tomer;
- Rutherford, Erica;
- West, Kiana A.;
- Wu, Yonggan;
- Choi, Jinlyung;
- Beck, Paul L.;
- Kaplan, Gilaad G.;
- Dabbagh, Karim;
- DeSantis, Todd Z.;
- Iwai, Shoko
Publication type:
Article
Topic modeling for multi-omic integration in the human gut microbiome and implications for Autism.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38228-0
By:
- Tataru, Christine;
- Peras, Marie;
- Rutherford, Erica;
- Dunlap, Kaiti;
- Yin, Xiaochen;
- Chrisman, Brianna S.;
- DeSantis, Todd Z.;
- Wall, Dennis P.;
- Iwai, Shoko;
- David, Maude M.
Publication type:
Article
Improved detection of disease-associated gut microbes using 16S sequence-based biomarkers.
Published in:
BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04427-7
By:
- Chrisman, Brianna S.;
- Paskov, Kelley M.;
- Stockham, Nate;
- Jung, Jae-Yoon;
- Varma, Maya;
- Washington, Peter Y.;
- Tataru, Christine;
- Iwai, Shoko;
- DeSantis, Todd Z.;
- David, Maude;
- Wall, Dennis P.
Publication type:
Article

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