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Cohesin-Dependent Loop Extrusion: Molecular Mechanics and Role in Cell Physiology.
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- Biochemistry (00062979), 2024, v. 89, n. 4, p. 601, doi. 10.1134/S0006297924040023
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Cohesin Complex: Structure and Principles of Interaction with DNA.
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- Biochemistry (00062979), 2024, v. 89, n. 4, p. 585, doi. 10.1134/S0006297924040011
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- Article
Recurrent Translocations in Topoisomerase Inhibitor-Related Leukemia Are Determined by the Features of DNA Breaks Rather Than by the Proximity of the Translocating Genes.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 17, p. 9824, doi. 10.3390/ijms23179824
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Complex Curing Pathways and Their Influence on the Phthalonitrile Resin Hardening and Elasticity.
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- Macromolecular Theory & Simulations, 2017, v. 26, n. 4, p. n/a, doi. 10.1002/mats.201700015
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Quantitative analysis of genomic element interactions by molecular colony technique.
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- Nucleic Acids Research, 2014, v. 42, n. 5, p. e36, doi. 10.1093/nar/gkt1322
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Disclosure of a structural milieu for the proximity ligation reveals the elusive nature of an active chromatin hub.
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- Nucleic Acids Research, 2013, v. 41, n. 6, p. 3563, doi. 10.1093/nar/gkt067
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- Article
Mapping of the nuclear matrix-bound chromatin hubs by a new M3C experimental procedure.
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- Nucleic Acids Research, 2010, v. 38, n. 22, p. 8051, doi. 10.1093/nar/gkq712
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- Article
TMEM8 – a non-globin gene entrapped in the globin web.
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- Nucleic Acids Research, 2009, v. 37, n. 22, p. 7394, doi. 10.1093/nar/gkp838
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- Article
Spatial configuration of the chicken α-globin gene domain: immature and active chromatin hubs.
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- Nucleic Acids Research, 2008, v. 36, n. 14, p. 4629, doi. 10.1093/nar/gkn429
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- Article
The Role of Crowding Forces in Juxtaposing β-Globin Gene Domain Remote Regulatory Elements in Mouse Erythroid Cells.
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- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0139855
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Actual Ligation Frequencies in the Chromosome Conformation Capture Procedure.
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- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060403
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- Article
Inhibition of DNA topoisomerase II may trigger illegitimate recombination in living cells: Experiments with a model system.
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- Journal of Cellular Biochemistry, 2006, v. 99, n. 2, p. 598, doi. 10.1002/jcb.20938
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- Article
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09185-y
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- Article
Evolution of the Genome 3D Organization: Comparison of Fused and Segregated Globin Gene Clusters.
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- Molecular Biology & Evolution, 2017, v. 34, n. 6, p. 1492, doi. 10.1093/molbev/msx100
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Development of the New Method for Oxidized Nickel Ore Processing.
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- KnE Materials Science, 2019, p. 162, doi. 10.18502/kms.v5i1.3965
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- Article
Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure.
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- Epigenetics & Chromatin, 2017, v. 10, p. 1, doi. 10.1186/s13072-017-0142-4
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Spatial organization of the chicken beta-globin gene domain in erythroid cells of embryonic and adult lineages.
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- Epigenetics & Chromatin, 2012, v. 5, n. 1, p. 16, doi. 10.1186/1756-8935-5-16
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Non-coding RNAs in chromatin folding and nuclear organization.
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- Cellular & Molecular Life Sciences, 2021, v. 78, n. 14, p. 5489, doi. 10.1007/s00018-021-03876-w
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Quantitative differences in TAD border strength underly the TAD hierarchy in Drosophila chromosomes.
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- Journal of Cellular Biochemistry, 2019, v. 120, n. 3, p. 4494, doi. 10.1002/jcb.27737
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Distinct Patterns of Colocalization of the CCND1 and CMYC Genes With Their Potential Translocation Partner IGH at Successive Stages of B-Cell Differentiation.
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- Journal of Cellular Biochemistry, 2016, v. 117, n. 7, p. 1506, doi. 10.1002/jcb.25516
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SUBALGEBRAS OF THE POLYNOMIAL ALGEBRA IN POSITIVE CHARACTERISTIC AND THE JACOBIAN.
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- Journal of Algebra & Its Applications, 2011, v. 10, n. 4, p. 605, doi. 10.1142/S0219498811004756
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LASCA: loop and significant contact annotation pipeline.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85970-4
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A modified protocol of Capture-C allows affordable and flexible high-resolution promoter interactome analysis.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-72496-4
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Phase Diagrams of Polymerization-Induced Self-Assembly Are Largely Determined by Polymer Recombination.
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- Polymers (20734360), 2022, v. 14, n. 23, p. 5331, doi. 10.3390/polym14235331
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Polymerization-Induced Microphase Separation with Long-Range Order in Melts of Gradient Copolymers.
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- Polymers (20734360), 2020, v. 12, n. 11, p. 2637, doi. 10.3390/polym12112637
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Phase Diagram for Ideal Diblock-Copolymer Micelles Compared to Polymerization-Induced Self Assembly.
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- Polymers (20734360), 2020, v. 12, n. 11, p. 2599, doi. 10.3390/polym12112599
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Phase Behavior of Melts of Diblock-Copolymers with One Charged Block.
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- Polymers (20734360), 2019, v. 11, n. 6, p. 1027, doi. 10.3390/polym11061027
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Single-cell genome-wide studies give new insight into nongenetic cell-to-cell variability in animals.
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- Histochemistry & Cell Biology, 2016, v. 146, n. 3, p. 239, doi. 10.1007/s00418-016-1466-z
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Suppression of liquid–liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells.
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- Nucleic Acids Research, 2021, v. 49, n. 18, p. 10524, doi. 10.1093/nar/gkab249
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Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics.
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- Nucleic Acids Research, 2020, v. 48, n. 12, p. 6699, doi. 10.1093/nar/gkaa457
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- Article
Communication of genome regulatory elements in a folded chromosome.
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- FEBS Letters, 2013, v. 587, n. 13, p. 1840, doi. 10.1016/j.febslet.2013.04.027
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In vivo formaldehyde cross-linking: it is time for black box analysis.
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- Briefings in Functional Genomics, 2015, v. 14, n. 2, p. 163, doi. 10.1093/bfgp/elu037
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Sensitivity of cohesin–chromatin association to high-salt treatment corroborates non-topological mode of loop extrusion.
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- Epigenetics & Chromatin, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13072-021-00411-w
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- Article
RNA-DNA interactomes of three prokaryotes uncovered by proximity ligation.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04853-8
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Order and stochasticity in the folding of individual Drosophila genomes.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20292-z
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- Article