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Predicting adverse drug reaction profiles by integrating protein interaction networks with drug structures.
- Published in:
- Proteomics, 2013, v. 13, n. 2, p. 313, doi. 10.1002/pmic.201200337
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- Publication type:
- Article
Pharmacogenomics of intravenous immunoglobulin response in Kawasaki disease.
- Published in:
- Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2023.1287094
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- Publication type:
- Article
Characterization and analysis of long non-coding rna (lncRNA) in In Vitro- and Ex Vivo-derived cardiac progenitor cells.
- Published in:
- PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0180096
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- Publication type:
- Article
Correction to: Association of CMV genomic mutations with symptomatic infection and hearing loss in congenital CMV infection.
- Published in:
- 2020
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- Publication type:
- corrected article
Association of CMV genomic mutations with symptomatic infection and hearing loss in congenital CMV infection.
- Published in:
- 2019
- By:
- Publication type:
- journal article
A method for developing regulatory gene set networks to characterize complex biological systems.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S11-S4
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- Publication type:
- Article
C<sup>2</sup>Maps: a network pharmacology database with comprehensive disease-gene-drug connectivity relationships.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 6, p. 1, doi. 10.1186/1471-2164-13-S6-S17
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- Publication type:
- Article
Predicting adverse side effects of drugs.
- Published in:
- BMC Genomics, 2011, v. 12, n. Suppl 5, p. 1, doi. 10.1186/1471-2164-12-S5-S11
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- Publication type:
- Article
PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D589, doi. 10.1093/nar/gkaa1094
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- Publication type:
- Article
BEERE: a web server for biomedical entity expansion, ranking and explorations.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. W1, p. W578, doi. 10.1093/nar/gkz428
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- Publication type:
- Article
PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D668, doi. 10.1093/nar/gkx1040
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- Publication type:
- Article
Linking clinotypes to phenotypes and genotypes from laboratory test results in comprehensive physical exams.
- Published in:
- 2021
- By:
- Publication type:
- journal article
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis.
- Published in:
- Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2024.1336135
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- Publication type:
- Article
PAGER Web APP: An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics.
- Published in:
- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.820361
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- Publication type:
- Article
PAGER: constructing PAGs and new PAG--PAG relationships for network biology.
- Published in:
- Bioinformatics, 2015, v. 31, n. 12, p. i250, doi. 10.1093/bioinformatics/btv265
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- Publication type:
- Article
Identifying the key regulators that promote cell-cycle activity in the hearts of early neonatal pigs after myocardial injury.
- Published in:
- PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0232963
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- Publication type:
- Article
Pharmacogenomics of coronary artery response to intravenous gamma globulin in kawasaki disease.
- Published in:
- NPJ Genomic Medicine, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41525-024-00419-7
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- Publication type:
- Article
Semantic web for integrated network analysis in biomedicine.
- Published in:
- Briefings in Bioinformatics, 2009, v. 10, n. 2, p. 177, doi. 10.1093/bib/bbp002
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- Publication type:
- Article
HAPPI-2: a Comprehensive and High-quality Map of Human Annotated and Predicted Protein Interactions.
- Published in:
- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3512-1
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- Publication type:
- Article
A method for identifying discriminative isoform-specific peptides for clinical proteomics application.
- Published in:
- BMC Genomics, 2016, v. 17, p. 239, doi. 10.1186/s12864-016-2907-8
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- Publication type:
- Article
PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-13-S15-S2
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- Publication type:
- Article
Reordering based integrative expression profiling for microarray classification.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 2, p. 1, doi. 10.1186/1471-2105-13-S2-S1
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- Publication type:
- Article
New threats to health data privacy.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S7
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- Publication type:
- Article
HOMER: a human organ-specific molecular electronic repository.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-12-S10-S4
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- Publication type:
- Article
PEPPI: a peptidomic database of human protein isoforms for proteomics experiments.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1
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- Publication type:
- Article
HPD: an online integrated human pathway database enabling systems biology studies.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S11-S5
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- Publication type:
- Article
ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.
- Published in:
- 2008
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- Publication type:
- Product Review
A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis.
- Published in:
- JAMA Network Open, 2022, v. 5, n. 9, p. e2227423, doi. 10.1001/jamanetworkopen.2022.27423
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- Publication type:
- Article
Analysis of cardiac single-cell RNA-sequencing data can be improved by the use of artificial-intelligence-based tools.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-32293-1
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- Publication type:
- Article
Simulation Study of cDNA Dataset to Investigate Possible Association of Differentially Expressed Genes of Human THP1-Monocytic Cells in Cancer Progression Affected by Bacterial Shiga Toxins.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00380
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- Publication type:
- Article
Systems-Scale Analysis Reveals Pathways Involved in Cellular Response to Methamphetamine.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018215
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- Publication type:
- Article
A SYSTEMS BIOLOGY APPROACH TO THE STUDY OF CISPLATIN DRUG RESISTANCE IN OVARIAN CANCERS.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2007, v. 5, n. 2a, p. 383, doi. 10.1142/S0219720007002606
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- Publication type:
- Article
A systematic simulation-based meta-analytical framework for prediction of physiological biomarkers in alopecia.
- Published in:
- Journal of Biological Research, 2019, v. 26, n. 1, p. 1, doi. 10.1186/s40709-019-0094-x
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- Publication type:
- Article
DMAP: a connectivity map database to enable identification of novel drug repositioning candidates.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S13-S4
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- Publication type:
- Article
SLDR: a computational technique to identify novel genetic regulatory relationships.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. Suppl 11, p. 1, doi. 10.1186/1471-2105-15-S11-S1
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- Publication type:
- Article
Semantic Web meets Integrative Biology: a survey.
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 1, p. 109, doi. 10.1093/bib/bbs014
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- Publication type:
- Article
Vitamin D and lumisterol derivatives can act on liver X receptors (LXRs).
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87061-w
- By:
- Publication type:
- Article
Vitamin D and lumisterol derivatives can act on liver X receptors (LXRs).
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87061-w
- By:
- Publication type:
- Article
Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d675
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- Publication type:
- Article
Breast cancer subtyping from plasma proteins.
- Published in:
- BMC Medical Genomics, 2013, v. 6, n. Suppl 1, p. 1, doi. 10.1186/1755-8794-6-S1-S6
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- Publication type:
- Article
Genome-wide meta-analysis of genetic susceptible genes for Type 2 Diabetes.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-6-S3-S16
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- Publication type:
- Article
An integrated proteomics analysis of bone tissues in response to mechanical stimulation.
- Published in:
- BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S7
- By:
- Publication type:
- Article
Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2656-1
- By:
- Publication type:
- Article
WIPER: Weighted in-Path Edge Ranking for biomolecular association networks.
- Published in:
- Quantitative Biology, 2019, v. 7, n. 4, p. 313, doi. 10.1007/s40484-019-0180-y
- By:
- Publication type:
- Article
MicroRNA Expression Profiling of Human Respiratory Epithelium Affected by Invasive Candida Infection.
- Published in:
- PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136454
- By:
- Publication type:
- Article
A new approach to construct pathway connected networks and its application in dose responsive gene expression profiles of rat liver regulated by 2,4DNT.
- Published in:
- BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-S3-S4
- By:
- Publication type:
- Article
Discovery of pathway biomarkers from coupled proteomics and systems biology methods.
- Published in:
- BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-S2-S12
- By:
- Publication type:
- Article
Repositioning drugs by targeting network modules: a Parkinson's disease case study.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 17, doi. 10.1186/s12859-017-1889-0
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- Publication type:
- Article