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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Published in:
Eurosurveillance (15607917), 2020, v. 25, n. 32, p. 7, doi. 10.2807/1560-7917.ES.2020.25.32.2001410
By:
- Alm, Erik;
- Broberg, Eeva K.;
- Connor, Thomas;
- Hodcroft, Emma B.;
- Komissarov, Andrey B.;
- Maurer-Stro, Sebastian;
- Melidou, Angeliki;
- Neher, Richard A.;
- O'Toole, Áine;
- Pereyaslov, Dmitriy
Publication type:
Article
Co-circulation of multiple enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20.
Published in:
Eurosurveillance (15607917), 2020, v. 25, n. 2, p. 7, doi. 10.2807/1560-7917.ES.2020.25.2.1900749
By:
- Midgley, Sofie Elisabeth;
- Benschop, Kimberley;
- Dyrdak, Robert;
- Mirand, Audrey;
- Bailly, Jean-Luc;
- Bierbaum, Sibylle;
- Buderus, Stefan;
- Böttcher, Sindy;
- Eis-Hübinger, Anna-Maria;
- Hönemann, Mario;
- Jensen, Veronika Vorobieva;
- Hartling, Ulla Birgitte;
- Henquell, Cécile;
- Panning, Marcus;
- Thomsen, Marianne Kragh;
- Hodcroft, Emma B.;
- Meijer, Adam
Publication type:
Article
Pervasive and non-random recombination in near full-length HIV genomes from Uganda.
Published in:
Virus Evolution, 2020, v. 6, n. 1, p. 1, doi. 10.1093/ve/veaa004
By:
- Grant, Heather E;
- Hodcroft, Emma B;
- Ssemwanga, Deogratius;
- Kitayimbwa, John M;
- Yebra, Gonzalo;
- Gomez, Luis Roger Esquivel;
- Frampton, Dan;
- Gall, Astrid;
- Kellam, Paul;
- Oliveira, Tulio de;
- Bbosa, Nicholas;
- Nsubuga, Rebecca N;
- Kibengo, Freddie;
- Kwan, Tsz Ho;
- Lycett, Samantha;
- Kao, Rowland;
- Robertson, David L;
- Ratmann, Oliver;
- Fraser, Christophe;
- Pillay, Deenan
Publication type:
Article
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing.
Published in:
Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vez007
By:
- Dyrdak, Robert;
- Mastafa, Monika;
- Hodcroft, Emma B;
- Neher, Richard A;
- Albert, Jan
Publication type:
Article
Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic.
Published in:
Scientific Reports, 2016, p. 39489, doi. 10.1038/srep39489
By:
- Yebra, Gonzalo;
- Hodcroft, Emma B.;
- Ragonnet-Cronin, Manon L.;
- Pillay, Deenan;
- Brown, Andrew J. Leigh
Publication type:
Article
A Direct Comparison of Two Densely Sampled HIV Epidemics: The UK and Switzerland.
Published in:
Scientific Reports, 2016, p. 32251, doi. 10.1038/srep32251
By:
- Ragonnet-Cronin, Manon L.;
- Shilaih, Mohaned;
- Günthard, Huldrych F.;
- Hodcroft, Emma B.;
- Böni, Jürg;
- Fearnhill, Esther;
- Dunn, David;
- Yerly, Sabine;
- Klimkait, Thomas;
- Aubert, Vincent;
- Yang, Wan-Lin;
- Brown, Alison E.;
- Lycett, Samantha J.;
- Kouyos, Roger;
- Brown, Andrew J. Leigh
Publication type:
Article
Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters.
Published in:
2016
By:
- Ragonnet-Cronin, Manon;
- Lycett, Samantha J.;
- Hodcroft, Emma B.;
- Hué, Stéphane;
- Fearnhill, Esther;
- Brown, Alison E.;
- Delpech, Valerie;
- Dunn, David;
- Leigh Brown, Andrew J.;
- United Kingdom HIV Drug Resistance Database
Publication type:
journal article
Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck.
Published in:
PLoS Pathogens, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.ppat.1009373
By:
- Braun, Katarina M.;
- Moreno, Gage K.;
- Halfmann, Peter J.;
- Hodcroft, Emma B.;
- Baker, David A.;
- Boehm, Emma C.;
- Weiler, Andrea M.;
- Haj, Amelia K.;
- Hatta, Masato;
- Chiba, Shiho;
- Maemura, Tadashi;
- Kawaoka, Yoshihiro;
- Koelle, Katia;
- O'Connor, David H.;
- Friedrich, Thomas C.
Publication type:
Article
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Published in:
Molecular Biology & Evolution, 2017, v. 34, n. 1, p. 185, doi. 10.1093/molbev/msw217
By:
- Ratmann, Oliver;
- Hodcroft, Emma B.;
- Pickles, Michael;
- Cori, Anne;
- Hall, Matthew;
- Lycett, Samantha;
- Colijn, Caroline;
- Dearlove, Bethany;
- Didelot, Xavier;
- Frost, Simon;
- Hossain, A. S. Md Mukarram;
- Joy, Jeffrey B.;
- Kendall, Michelle;
- Kuhnert, Denise;
- Leventhal, Gabriel E.;
- Liang, Richard;
- Plazzotta, Giacomo;
- Poon, Art F. Y.;
- Rasmussen, David A.;
- Stadler, Tanja
Publication type:
Article
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.
Published in:
PLoS Biology, 2021, v. 19, n. 5, p. 1, doi. 10.1371/journal.pbio.3001236
By:
- Vogels, Chantal B. F.;
- Breban, Mallery I.;
- Ott, Isabel M.;
- Alpert, Tara;
- Petrone, Mary E.;
- Watkins, Anne E.;
- Kalinich, Chaney C.;
- Earnest, Rebecca;
- Rothman, Jessica E.;
- Goes de Jesus, Jaqueline;
- Morales Claro, Ingra;
- Magalhães Ferreira, Giulia;
- Crispim, Myuki A. E.;
- Singh, Lavanya;
- Tegally, Houriiyah;
- Anyaneji, Ugochukwu J.;
- Hodcroft, Emma B.;
- Mason, Christopher E.;
- Khullar, Gaurav;
- Metti, Jessica
Publication type:
Article
Identification of resident memory CD8+ T cells with functional specificity for SARS-CoV-2 in unexposed oropharyngeal lymphoid tissue.
Published in:
Science Immunology, 2021, v. 6, n. 64, p. 1, doi. 10.1126/sciimmunol.abk0894
By:
- Niessl, Julia;
- Sekine, Takuya;
- Lange, Joshua;
- Konya, Viktoria;
- Forkel, Marianne;
- Maric, Jovana;
- Rao, Anna;
- Mazzurana, Luca;
- Kokkinou, Efthymia;
- Weigel, Whitney;
- Llewellyn-Lacey, Sian;
- Hodcroft, Emma B.;
- Karlsson, Annika C.;
- Fehrm, Johan;
- Sundman, Joar;
- Price, David A.;
- Mjösberg, Jenny;
- Friberg, Danielle;
- Buggert, Marcus
Publication type:
Article
Genetic Variants of SARS-CoV-2-What Do They Mean?
Published in:
JAMA: Journal of the American Medical Association, 2021, v. 325, n. 6, p. 529, doi. 10.1001/jama.2020.27124
By:
- Lauring, Adam S.;
- Hodcroft, Emma B.
Publication type:
Article
FROM PROMISE TO REALIZATION: SEQUENCING AND SURVEILLANCE FROM HIV-1 TO SARS-CoV-2.
Published in:
Topics in Antiviral Medicine, 2023, v. 31, n. 2, p. 37
By:
- Hodcroft, Emma B.
Publication type:
Article
Early unrecognised SARS-CoV-2 introductions shaped the first pandemic wave, Sweden, 2020.
Published in:
Eurosurveillance (15607917), 2024, v. 29, n. 41, p. 1, doi. 10.2807/1560-7917.ES.2024.29.41.2400021
By:
- Dyrdak, Robert;
- Hodcroft, Emma B.;
- Broddesson, Sandra;
- Grabbe, Malin;
- Franklin, Hildur;
- Gisslén, Magnus;
- Holm, Maricris E.;
- Lindh, Magnus;
- Nederby-Öhd, Joanna;
- Ringlander, Johan;
- Sundqvist, Martin;
- Neher, Richard A.;
- Albert, Jan
Publication type:
Article
Epidemiological and Clinical Insights into the Enterovirus D68 Upsurge in Europe 2021–2022 and Emergence of Novel B3-Derived Lineages, ENPEN Multicentre Study.
Published in:
Journal of Infectious Diseases, 2024, v. 230, n. 4, p. e917, doi. 10.1093/infdis/jiae154
By:
- Simoes, Margarida Pires;
- Hodcroft, Emma B;
- Simmonds, Peter;
- Albert, Jan;
- Alidjinou, Enagnon K;
- Ambert-Balay, Katia;
- Andrés, Cristina;
- Antón, Andrés;
- Auvray, Christelle;
- Bailly, Jean-Luc;
- Baldanti, Fausto;
- Bastings, Capser;
- Beard, Stuart;
- Berengua, Carla;
- Berginc, Natasa;
- Bloemen, Mandy;
- Blomqvist, Soile;
- Bosma, Froukje;
- Böttcher, Sindy;
- Bubba, Laura
Publication type:
Article
Importation of Alpha and Delta variants during the SARS-CoV-2 epidemic in Switzerland: Phylogenetic analysis and intervention scenarios.
Published in:
PLoS Pathogens, 2023, v. 19, n. 9, p. 1, doi. 10.1371/journal.ppat.1011553
By:
- Reichmuth, Martina L.;
- Hodcroft, Emma B.;
- Althaus, Christian L.
Publication type:
Article
Evolution, geographic spreading, and demographic distribution of Enterovirus D68.
Published in:
PLoS Pathogens, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.ppat.1010515
By:
- Hodcroft, Emma B.;
- Dyrdak, Robert;
- Andrés, Cristina;
- Egli, Adrian;
- Reist, Josiane;
- García Martínez de Artola, Diego;
- Alcoba-Flórez, Julia;
- Niesters, Hubert G. M.;
- Antón, Andrés;
- Poelman, Randy;
- Reynders, Marijke;
- Wollants, Elke;
- Neher, Richard A.;
- Albert, Jan
Publication type:
Article

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