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Disease pathways at the Rat Genome Database Pathway Portal: Genes in context - a network approach to understanding the molecular mechanisms of disease.
Published in:
Human Genomics, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s40246-014-0017-8
By:
- Petri, Victoria;
- Hayman, G. Thomas;
- Tutaj, Marek;
- Smith, Jennifer R.;
- Laulederkind, Stanley J. F.;
- Shur-Jen Wang;
- Nigam, Rajni;
- De Pons, Jeff;
- Shimoyama, Mary;
- Dwinell, Melinda R.;
- Worthey, Elizabeth A.;
- Jacob, Howard J.
Publication type:
Article
The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information.
Published in:
Human Genomics, 2013, v. 7, p. 1, doi. 10.1186/1479-7364-7-4
By:
- Hayman, G. Thomas;
- Jayaraman, Pushkala;
- Petri, Victoria;
- Tutaj, Marek;
- Weisong Liu;
- De Pons, Jeff;
- Dwinell, Melinda R.;
- Shimoyama, Mary
Publication type:
Article
The Rat Genome Database 2009: variation, ontologies and pathways.
Published in:
Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D744
By:
- Dwinell, Melinda R.;
- Worthey, Elizabeth A.;
- Shimoyama, Mary;
- Bakir-Gungor, Burcu;
- DePons, Jeffrey;
- Laulederkind, Stanley;
- Lowry, Timothy;
- Nigram, Rajni;
- Petri, Victoria;
- Smith, Jennifer;
- Stoddard, Alexander;
- Twigger, Simon N.;
- Jacob, Howard J.
Publication type:
Article
Transcriptional analysis of the multiple Sry genes and developmental program at the onset of testis differentiation in the rat.
Published in:
Biology of Sex Differences, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13293-020-00305-8
By:
- Prokop, Jeremy W.;
- Chhetri, Surya B.;
- van Veen, J. Edward;
- Chen, Xuqi;
- Underwood, Adam C.;
- Uhl, Katie;
- Dwinell, Melinda R.;
- Geurts, Aron M.;
- Correa, Stephanie M.;
- Arnold, Arthur P.
Publication type:
Article
Chromosome substitution modulates resistance to ischemia reperfusion injury in Brown Norway rats.
Published in:
Kidney International, 2013, v. 83, n. 2, p. 242, doi. 10.1038/ki.2012.391
By:
- Basile, David P;
- Dwinell, Melinda R;
- Wang, Shur-Jen;
- Shames, Brian D;
- Donohoe, Deborah L;
- Chen, Shaoying;
- Sreedharan, Rajasree;
- Van Why, Scott K
Publication type:
Article
The Rat Genome Database 2013—data, tools and users.
Published in:
Briefings in Bioinformatics, 2013, v. 14, n. 4, p. 520, doi. 10.1093/bib/bbt007
By:
- Laulederkind, Stanley J. F.;
- Hayman, G. Thomas;
- Wang, Shur-Jen;
- Smith, Jennifer R.;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Petri, Victoria;
- de Pons, Jeff;
- Dwinell, Melinda R.;
- Shimoyama, Mary;
- Munzenmaier, Diane H.;
- Worthey, Elizabeth A.;
- Jacob, Howard J.
Publication type:
Article
Online tools for understanding rat physiology.
Published in:
Briefings in Bioinformatics, 2010, v. 11, n. 4, p. 431, doi. 10.1093/bib/bbp069
By:
- Dwinell, Melinda R.
Publication type:
Article
The pathway ontology - updates and applications.
Published in:
Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-7
By:
- Petri, Victoria;
- Jayaraman, Pushkala;
- Tutaj, Marek;
- Thomas Hayman, G.;
- Smith, Jennifer R.;
- Pons, Jeff De;
- Laulederkind, Stanley J. F.;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Shur-Jen Wang;
- Shimoyama, Mary;
- Dwinell, Melinda R.;
- Munzenmaier, Diane H.;
- Worthey, Elizabeth A.;
- Jacob, Howard J.
Publication type:
Article
Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-36
By:
- Nigam, Rajni;
- Munzenmaier, Diane H.;
- Worthey, Elizabeth A.;
- Dwinell, Melinda R.;
- Shimoyama, Mary;
- Jacob, Howard J.
Publication type:
Article
The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-26
By:
- Smith, Jennifer R.;
- Park, Carissa A.;
- Nigam, Rajni;
- Laulederkind, Stanley J. F.;
- Thomas Hayman, G.;
- Shur-Jen Wang;
- Lowry, Timothy F.;
- Petri, Victoria;
- Pons, Jeff De;
- Tutaj, Marek;
- Weisong Liu;
- Worthey, Elizabeth A.;
- Shimoyama, Mary;
- Dwinell, Melinda R.
Publication type:
Article
Quantitative phenotype analysis to identify, validate and compare rat disease models.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz037
By:
- Zhao, Yiqing;
- Smith, Jennifer R;
- Wang, Shur-Jen;
- Dwinell, Melinda R;
- Shimoyama, Mary
Publication type:
Article
Integrated curation and data mining for disease and phenotype models at the Rat Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz014
By:
- Wang, Shur-Jen;
- Laulederkind, Stanley J F;
- Zhao, Yiqing;
- Hayman, G Thomas;
- Smith, Jennifer R;
- Tutaj, Monika;
- Thota, Jyothi;
- Tutaj, Marek A;
- Hoffman, Matthew J;
- Bolton, Elizabeth R;
- Pons, Jeffrey De;
- Dwinell, Melinda R;
- Shimoyama, Mary
Publication type:
Article
The Disease Portals, disease-gene annotation and the RGD disease ontology at the Rat Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw034
By:
- Hayman, G. Thomas;
- Laulederkind, Stanley J. F.;
- Smith, Jennifer R.;
- Shur-Jen Wang;
- Petri, Victoria;
- Nigam, Rajni;
- Tutaj, Marek;
- De Pons, Jeff;
- Dwinell, Melinda R.;
- Shimoyama, Mary
Publication type:
Article
PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease.
Published in:
2015
By:
- Shur-Jen Wang;
- Laulederkind, Stanley J. F.;
- Hayman, G. Thomas;
- Petri, Victoria;
- Weisong Liu;
- Smith, Jennifer R.;
- Nigam, Rajni;
- Dwinell, Melinda R.;
- Shimoyama, Mary
Publication type:
Product Review
OntoMate: a text-mining tool aiding curation at the Rat Genome Database.
Published in:
2015
By:
- Weisong Liu;
- Laulederkind, Stanley J. F.;
- Hayman, G. Thomas;
- Shur-Jen Wang;
- Nigam, Rajni;
- Smith, Jennifer R.;
- De Pons, Jeff;
- Dwinell, Melinda R.;
- Shimoyama, Mary
Publication type:
Product Review
Analysis of disease-associated objects at the Rat Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat046
By:
- Shur-Jen Wang;
- Laulederkind, Stanley J. F.;
- Hayman, G. T.;
- Smith, Jennifer R.;
- Petri, Victoria;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Dwinell, Melinda R.;
- Worthey, Elizabeth A.;
- Munzenmaier, Diane H.;
- Shimoyama, Mary;
- Jacob, Howard J.
Publication type:
Article
Pheno Miner: quantitative phenotype curation at the rat genome database.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat015
By:
- Laulederkind, Stanley J. F.;
- Weisong Liu;
- Smith, Jennifer R.;
- Hayman, G. Thomas;
- Shur-Jen Wang;
- Nigam, Rajni;
- Petri, Victoria;
- Lowry, Timothy F.;
- de Pons, Jeff;
- Dwinell, Melinda R.;
- Shimoyama, Mary
Publication type:
Article
Ontology searching and browsing at the Rat Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Laulederkind, Stanley J. F.;
- Tutaj, Marek;
- Shimoyama, Mary;
- Hayman, G. Thomas;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Petri, Victoria;
- Smith, Jennifer R.;
- Wang, Shur-Jen;
- de Pons, Jeff;
- Dwinell, Melinda R.;
- Jacob, Howard J.
Publication type:
Article
The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.
Published in:
Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar002
By:
- Laulederkind, Stanley J. F.;
- Shimoyama, Mary;
- Hayman, G. Thomas;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Petri, Victoria;
- Smith, Jennifer R.;
- Shur-Jen Wang;
- de Pons, Jeff;
- Kowalski, George;
- Liu, Weisong;
- Rood, Wes;
- Munzenmaier, Diane H.;
- Dwinell, Melinda R.;
- Twigger, Simon N.;
- Jacob, Howard J.
Publication type:
Article
The Rat Genome Database Pathway Portal.
Published in:
Database: The Journal of Biological Databases & Curation, 2011, v. 2011, n. 10, p. 1
By:
- Petri, Victoria;
- Shimoyama, Mary;
- Hayman, G. Thomas;
- Smith, Jennifer R.;
- Tutaj, Marek;
- de Pons, Jeff;
- Dwinell, Melinda R.;
- Munzenmaier, Diane H.;
- Twigger, Simon N.;
- Jacob, Howard J.
Publication type:
Article
The Power of the Heterogeneous Stock Rat Founder Strains in Modeling Metabolic Disease.
Published in:
Endocrinology, 2023, v. 164, n. 12, p. 1, doi. 10.1210/endocr/bqad157
By:
- Wagner, Valerie A;
- Holl, Katie L;
- Clark, Karen C;
- Reho, John J;
- Lehmler, Hans-Joachim;
- Wang, Kai;
- Grobe, Justin L;
- Dwinell, Melinda R;
- Raff, Hershel;
- Kwitek, Anne E
Publication type:
Article
The Rat Genome Database Curators: Who, What, Where, Why.
Published in:
2009
By:
- Shimoyama, Mary;
- Hayman, G. Thomas;
- Laulederkind, Stanley J. F.;
- Nigam, Rajni;
- Lowry, Timothy F.;
- Petri, Victoria;
- Smith, Jennifer R.;
- Shur-Jen Wang;
- Munzenmaier, Diane H.;
- Dwinell, Melinda R.;
- Twigger, Simon N.;
- Jacob, Howard J.
Publication type:
Opinion
High-Throughput Production and Phenotyping of Rat Knockout Models for Hypertension.
Published in:
FASEB Journal, 2007, v. 21, n. 6, p. A1236, doi. 10.1096/fasebj.21.6.a1236
By:
- Moreno, Carol;
- Dwinell, Melinda R.;
- Majewski, Rebecca R.;
- Kwitek, Anne E.;
- Jessner, Martin J.;
- Feroah, Thorn R.;
- Forster, Hubert V.;
- Mattson, David L.;
- Lombard, Julian H.;
- Macquestion, Gregory D.;
- Roman, Richard J.;
- Greene, Andrew S.;
- Cowley, Allen W.;
- Jacob, Howard J.
Publication type:
Article
Ndufc2 Gene Inhibition Is Associated With Mitochondrial Dysfunction and Increased Stroke Susceptibility in an Animal Model of Complex Human Disease.
Published in:
2016
By:
- Rubattu, Speranza;
- Di Castro, Sara;
- Schulz, Herbert;
- Geurts, Aron M.;
- Cotugno, Maria;
- Bianchi, Franca;
- Maatz, Henrike;
- Hummel, Oliver;
- Falak, Samreen;
- Stanzione, Rosita;
- Marchitti, Simona;
- Scarpino, Stefania;
- Giusti, Betti;
- Kura, Ada;
- Gensini, Gian Franco;
- Peyvandi, Flora;
- Mannucci, Pier Mannuccio;
- Rasura, Maurizia;
- Sciarretta, Sebastiano;
- Dwinell, Melinda R.
Publication type:
journal article
The phenotypic impact of the male-specific region of chromosome-Y in inbred mating: the role of genetic variants and gene duplications in multiple inbred rat strains.
Published in:
Biology of Sex Differences, 2016, v. 7, p. 1, doi. 10.1186/s13293-016-0064-z
By:
- Prokop, Jeremy W.;
- Tsaih, Shirng-Wern;
- Faber, Allison B.;
- Boehme, Shannon;
- Underwood, Adam C.;
- Troyer, Samuel;
- Playl, Lauren;
- Milsted, Amy;
- Turner, Monte E.;
- Ely, Daniel;
- Martins, Almir S.;
- Tutaj, Marek;
- Lazar, Jozef;
- Dwinell, Melinda R.;
- Jacob, Howard J.
Publication type:
Article
The emerging role for rat models in gene discovery.
Published in:
Mammalian Genome, 2011, v. 22, n. 7/8, p. 466, doi. 10.1007/s00335-011-9346-2
By:
- Dwinell, Melinda R.;
- Lazar, Jozef;
- Geurts, Aron M.
Publication type:
Article
Rare disease research resources at the Rat Genome Database.
Published in:
Genetics, 2023, v. 224, n. 4, p. 1, doi. 10.1093/genetics/iyad078
By:
- Kaldunski, Mary L.;
- Smith, Jennifer R.;
- Brodie, Kent C.;
- De Pons, Jeffrey L.;
- Demos, Wendy M.;
- Gibson, Adam C.;
- Hayman, G. Thomas;
- Lamers, Logan;
- Laulederkind, Stanley J. F.;
- Thorat, Ketaki;
- Thota, Jyothi;
- Tutaj, Marek A.;
- Tutaj, Monika;
- Vedi, Mahima;
- Wang, Shur-Jen;
- Zacher, Stacy;
- Dwinell, Melinda R.;
- Kwitek, Anne E.
Publication type:
Article
2022 updates to the Rat Genome Database: a Findable, Accessible, Interoperable, and Reusable (FAIR) resource.
Published in:
Genetics, 2023, v. 224, n. 1, p. 1, doi. 10.1093/genetics/iyad042
By:
- Vedi, Mahima;
- Smith, Jennifer R.;
- Hayman, G. Thomas;
- Tutaj, Monika;
- Brodie, Kent C.;
- De Pons, Jeffrey L.;
- Demos, Wendy M.;
- Gibson, Adam C.;
- Kaldunski, Mary L.;
- Lamers, Logan;
- Laulederkind, Stanley J. F.;
- Thota, Jyothi;
- Thorat, Ketaki;
- Tutaj, Marek A.;
- Wang, Shur-Jen;
- Zacher, Stacy;
- Dwinell, Melinda R.;
- Kwitek, Anne E.
Publication type:
Article
Physiological genomics: from bench to bedside.
Published in:
Experimental Physiology, 2007, v. 92, n. 6, p. 987, doi. 10.1113/expphysiol.2007.036335
By:
- Dwinell, Melinda R.
Publication type:
Article
Body Composition and Metabolic Changes in a Lyon Hypertensive Congenic Rat and Identification of Ercc6l2 as a Positional Candidate Gene.
Published in:
Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.903971
By:
- Clark, Karen C.;
- Wagner, Valerie A.;
- Holl, Katie L.;
- Reho, John J.;
- Tutaj, Monika;
- Smith, Jennifer R.;
- Dwinell, Melinda R.;
- Grobe, Justin L.;
- Kwitek, Anne E.
Publication type:
Article
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D731, doi. 10.1093/nar/gkz1041
By:
- Smith, Jennifer R;
- Hayman, G Thomas;
- Wang, Shur-Jen;
- Laulederkind, Stanley J F;
- Hoffman, Matthew J;
- Kaldunski, Mary L;
- Tutaj, Monika;
- Thota, Jyothi;
- Nalabolu, Harika S;
- Ellanki, Santoshi L R;
- Tutaj, Marek A;
- De Pons, Jeffrey L;
- Kwitek, Anne E;
- Dwinell, Melinda R;
- Shimoyama, Mary E
Publication type:
Article
The Rat Genome Database: Genetic, Genomic, and Phenotypic Data Across Multiple Species.
Published in:
Current Protocols, 2023, v. 3, n. 6, p. 1, doi. 10.1002/cpz1.804
By:
- Laulederkind, Stanley J. F.;
- Hayman, G. Thomas;
- Wang, Shur‐Jen;
- Kaldunski, Mary L.;
- Vedi, Mahima;
- Demos, Wendy M.;
- Tutaj, Monika;
- Smith, Jennifer R.;
- Lamers, Logan;
- Gibson, Adam C.;
- Thorat, Ketaki;
- Thota, Jyothi;
- Tutaj, Marek A.;
- de Pons, Jeffrey L.;
- Dwinell, Melinda R.;
- Kwitek, Anne E.
Publication type:
Article
Ontological Analysis of Coronavirus Associated Human Genes at the COVID-19 Disease Portal.
Published in:
Genes, 2022, v. 13, n. 12, p. 2304, doi. 10.3390/genes13122304
By:
- Wang, Shur-Jen;
- Brodie, Kent C.;
- De Pons, Jeffrey L.;
- Demos, Wendy M.;
- Gibson, Adam C.;
- Hayman, G. Thomas;
- Hill, Morgan L.;
- Kaldunski, Mary L.;
- Lamers, Logan;
- Laulederkind, Stanley J. F.;
- Nalabolu, Harika S.;
- Thota, Jyothi;
- Thorat, Ketaki;
- Tutaj, Marek A.;
- Tutaj, Monika;
- Vedi, Mahima;
- Zacher, Stacy;
- Smith, Jennifer R.;
- Dwinell, Melinda R.;
- Kwitek, Anne E.
Publication type:
Article
Genetic background in the rat affects endocrine and metabolic outcomes of bisphenol F exposure.
Published in:
Toxicological Sciences, 2023, v. 194, n. 1, p. 84, doi. 10.1093/toxsci/kfad046
By:
- Wagner, Valerie A;
- Holl, Katie L;
- Clark, Karen C;
- Reho, John J;
- Dwinell, Melinda R;
- Lehmler, Hans-Joachim;
- Raff, Hershel;
- Grobe, Justin L;
- Kwitek, Anne E
Publication type:
Article

Found: 34