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Interactome of the HIV-1 proteome and human host RNA.
Published in:
EMBO Reports, 2024, v. 25, n. 9, p. 4078, doi. 10.1038/s44319-024-00222-6
By:
- Schynkel, Tinus;
- Snippenberg, Willem van;
- Verniers, Kimberly;
- Jang, Gwendolyn M;
- Krogan, Nevan J;
- Mestdagh, Pieter;
- Vandekerckhove, Linos;
- Trypsteen, Wim
Publication type:
Article
Replication competent virus as an important source of bias in HIV latency models utilizing single round viral constru.
Published in:
Retrovirology, 2014, v. 11, n. 1, p. 1, doi. 10.1186/s12977-014-0070-3
By:
- Bonczkowski, Pawel;
- De Spiegelaere, Ward;
- Bosque, Alberto;
- White, Cory H.;
- Van Nuffel, Anouk;
- Malatinkova, Eva;
- Kiselinova, Maja;
- Trypsteen, Wim;
- Witkowski, Wojciech;
- Vermeire, Jolien;
- Verhasselt, Bruno;
- Martins, Laura;
- Woelk, Christopher H.;
- Planelles, Vicente;
- Vandekerckhove, Linos
Publication type:
Article
IRF7 and RNH1 are modifying factors of HIV-1 reservoirs: a genome-wide association analysis.
Published in:
2021
By:
- Zhang, Zhenhua;
- Trypsteen, Wim;
- Blaauw, Marc;
- Chu, Xiaojing;
- Rutsaert, Sofie;
- Vandekerckhove, Linos;
- van der Heijden, Wouter;
- dos Santos, Jéssica Cristina;
- Xu, Cheng-Jian;
- Swertz, Morris A.;
- van der Ven, Andre;
- Li, Yang
Publication type:
journal article
ddpcRquant: threshold determination for single channel droplet digital PCR experiments.
Published in:
Analytical & Bioanalytical Chemistry, 2015, v. 407, n. 19, p. 5827, doi. 10.1007/s00216-015-8773-4
By:
- Trypsteen, Wim;
- Vynck, Matthijs;
- De Neve, Jan;
- Bonczkowski, Pawel;
- Kiselinova, Maja;
- Malatinkova, Eva;
- Vervisch, Karen;
- Thas, Olivier;
- Vandekerckhove, Linos;
- De Spiegelaere, Ward
Publication type:
Article
Impact of a decade of successful antiretroviral therapy initiated at HIV-1 seroconversion on blood and rectal reservoirs.
Published in:
eLife, 2015, p. 1, doi. 10.7554/eLife.09115
By:
- Malatinkova, Eva;
- De Spiegelaere, Ward;
- Bonczkowski, Pawel;
- Kiselinova, Maja;
- Vervisch, Karen;
- Trypsteen, Wim;
- Johnson, Margaret;
- Verhofstede, Chris;
- de Looze, Danny;
- Murray, Charles;
- Loes, Sabine Kinloch-de;
- Vandekerckhove, Linos
Publication type:
Article
Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals.
Published in:
Clinical Epigenetics, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13148-020-00829-1
By:
- Kint, Sam;
- Trypsteen, Wim;
- De Spiegelaere, Ward;
- Malatinkova, Eva;
- Kinloch-de Loes, Sabine;
- De Meyer, Tim;
- Van Criekinge, Wim;
- Vandekerckhove, Linos
Publication type:
Article
Evaluating predictive markers for viral rebound and safety assessment in blood and lumbar fluid during HIV-1 treatment interruption.
Published in:
2020
By:
- Scheerder, Marie-Angélique De;
- Hecke, Clarissa Van;
- Zetterberg, Henrik;
- Fuchs, Dietmar;
- Langhe, Nele De;
- Rutsaert, Sofie;
- Vrancken, Bram;
- Trypsteen, Wim;
- Noppe, Ytse;
- Gucht, Bea Van Der;
- Pelgrom, Jolanda;
- Wanzeele, Filip Van;
- Palmer, Sarah;
- Lemey, Philippe;
- Gisslén, Magnus;
- Vandekerckhove, Linos;
- De Scheerder, Marie-Angélique;
- Van Hecke, Clarissa;
- De Langhe, Nele;
- Van Der Gucht, Bea
Publication type:
journal article
Author Correction: Organ-specific genome diversity of replication-competent SARS-CoV-2.
Published in:
2022
By:
- Van Cleemput, Jolien;
- van Snippenberg, Willem;
- Lambrechts, Laurens;
- Dendooven, Amélie;
- D'Onofrio, Valentino;
- Couck, Liesbeth;
- Trypsteen, Wim;
- Vanrusselt, Jan;
- Theuns, Sebastiaan;
- Vereecke, Nick;
- van den Bosch, Thierry P. P.;
- Lammens, Martin;
- Driessen, Ann;
- Achten, Ruth;
- Bracke, Ken R.;
- Van den Broeck, Wim;
- Von der Thüsen, Jan;
- Nauwynck, Hans;
- Van Dorpe, Jo;
- Gerlo, Sarah
Publication type:
Correction Notice
Emerging PCR-Based Techniques to Study HIV-1 Reservoir Persistence.
Published in:
Viruses (1999-4915), 2020, v. 12, n. 2, p. 149, doi. 10.3390/v12020149
By:
- Lambrechts, Laurens;
- Cole, Basiel;
- Rutsaert, Sofie;
- Trypsteen, Wim;
- Vandekerckhove, Linos
Publication type:
Article
HIV-1 RNA and HIV-1 DNA persistence during suppressive ART with PI-based or nevirapine-based regimens.
Published in:
2015
By:
- Kiselinova, Maja;
- Geretti, Anna Maria;
- Malatinkova, Eva;
- Vervisch, Karen;
- Beloukas, Apostolos;
- Messiaen, Peter;
- Bonczkowski, Pawel;
- Trypsteen, Wim;
- Callens, Steven;
- Verhofstede, Chris;
- De Spiegelaere, Ward;
- Vandekerckhove, Linos
Publication type:
journal article
People with HIV have higher percentages of circulating CCR5+ CD8+ T cells and lower percentages of CCR5+ regulatory T cells.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-15646-0
By:
- van Eekeren, Louise E.;
- Matzaraki, Vasiliki;
- Zhang, Zhenhua;
- van de Wijer, Lisa;
- Blaauw, Marc J. T.;
- de Jonge, Marien I.;
- Vandekerckhove, Linos;
- Trypsteen, Wim;
- Joosten, Leo A. B.;
- Netea, Mihai G.;
- de Mast, Quirijn;
- Koenen, Hans J. P. M.;
- Li, Yang;
- van der Ven, André J. A. M.
Publication type:
Article
Organ-specific genome diversity of replication competent SARS-CoV-2.
Published in:
Nature Communications, 2021, v. 12, p. 1, doi. 10.1038/s41467-021-26884-7
By:
- Van Cleemput, Jolien;
- van Snippenberg, Willem;
- Lambrechts, Laurens;
- Dendooven, Amélie;
- D'Onofrio, Valentino;
- Couck, Liesbeth;
- Trypsteen, Wim;
- Vanrusselt, Jan;
- Theuns, Sebastiaan;
- Vereecke, Nick;
- van den Bosch, Thierry P. P.;
- Lammens, Martin;
- Driessen, Ann;
- Achten, Ruth;
- Bracke, Ken R.;
- Van den Broeck, Wim;
- Von der Thüsen, Jan;
- Nauwynck, Hans;
- Van Dorpe, Jo;
- Gerlo, Sarah
Publication type:
Article
Long non-coding RNAs and latent HIV – A search for novel targets for latency reversal.
Published in:
PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0224879
By:
- Trypsteen, Wim;
- White, Cory H.;
- Mukim, Amey;
- Spina, Celsa A.;
- De Spiegelaere, Ward;
- Lefever, Steve;
- Planelles, Vicente;
- Bosque, Alberto;
- Woelk, Christopher H.;
- Vandekerckhove, Linos;
- Beliakova-Bethell, Nadejda
Publication type:
Article
The Future of Digital Polymerase Chain Reaction in Virology.
Published in:
Molecular Diagnosis & Therapy, 2016, v. 20, n. 5, p. 437, doi. 10.1007/s40291-016-0224-1
By:
- Vynck, Matthijs;
- Trypsteen, Wim;
- Thas, Olivier;
- Vandekerckhove, Linos;
- De Spiegelaere, Ward
Publication type:
Article
Comparison of Methods for In-House Screening of HLA-B*57:01 to Prevent Abacavir Hypersensitivity in HIV-1 Care.
Published in:
PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123525
By:
- De Spiegelaere, Ward;
- Philippé, Jan;
- Vervisch, Karen;
- Verhofstede, Chris;
- Malatinkova, Eva;
- Kiselinova, Maja;
- Trypsteen, Wim;
- Bonczkowski, Pawel;
- Vogelaers, Dirk;
- Callens, Steven;
- Ruelle, Jean;
- Kabeya, Kabamba;
- De Wit, Stephane;
- Van Acker, Petra;
- Van Sandt, Vicky;
- Emonds, Marie-Paule;
- Coucke, Paul;
- Sermijn, Erica;
- Vandekerckhove, Linos
Publication type:
Article
Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs.
Published in:
2021
By:
- Lorenzi, Lucia;
- Chiu, Hua-Sheng;
- Avila Cobos, Francisco;
- Gross, Stephen;
- Volders, Pieter-Jan;
- Cannoodt, Robrecht;
- Nuytens, Justine;
- Vanderheyden, Katrien;
- Anckaert, Jasper;
- Lefever, Steve;
- Tay, Aidan P.;
- de Bony, Eric J.;
- Trypsteen, Wim;
- Gysens, Fien;
- Vromman, Marieke;
- Goovaerts, Tine;
- Hansen, Thomas Birkballe;
- Kuersten, Scott;
- Nijs, Nele;
- Taghon, Tom
Publication type:
Correction Notice
The RNA Atlas expands the catalog of human non-coding RNAs.
Published in:
Nature Biotechnology, 2021, v. 39, n. 11, p. 1453, doi. 10.1038/s41587-021-00936-1
By:
- Lorenzi, Lucia;
- Chiu, Hua-Sheng;
- Avila Cobos, Francisco;
- Gross, Stephen;
- Volders, Pieter-Jan;
- Cannoodt, Robrecht;
- Nuytens, Justine;
- Vanderheyden, Katrien;
- Anckaert, Jasper;
- Lefever, Steve;
- Tay, Aidan P.;
- de Bony, Eric J.;
- Trypsteen, Wim;
- Gysens, Fien;
- Vromman, Marieke;
- Goovaerts, Tine;
- Hansen, Thomas Birkballe;
- Kuersten, Scott;
- Nijs, Nele;
- Taghon, Tom
Publication type:
Article
FAVORABLE METABOLIC OUTCOMES 48 WEEKS AFTER SWITCH TO DTG/3TC.
Published in:
Topics in Antiviral Medicine, 2023, v. 31, n. 2, p. 265
By:
- Degroote, Sophie;
- Vanherrewege, Sophie;
- Tobback, Els;
- Caluwe, Els;
- Vincke, Lara;
- Trypsteen, Wim;
- Delporte, Mareva;
- Blomme, Evy;
- Vandekerckhove, Linos;
- De Scheerder, Marie-Angélique
Publication type:
Article
The Architecture of Circulating Immune Cells Is Dysregulated in People Living With HIV on Long Term Antiretroviral Treatment and Relates With Markers of the HIV-1 Reservoir, Cytomegalovirus, and Microbial Translocation.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.661990
By:
- Van de Wijer, Lisa;
- van der Heijden, Wouter A.;
- Horst, Rob ter;
- Jaeger, Martin;
- Trypsteen, Wim;
- Rutsaert, Sofie;
- van Cranenbroek, Bram;
- van Rijssen, Esther;
- Joosten, Irma;
- Joosten, Leo;
- Vandekerckhove, Linos;
- Schoofs, Till;
- van Lunzen, Jan;
- Netea, Mihai G.;
- Koenen, Hans J.P.M.;
- van der Ven, André J.A.M.;
- de Mast, Quirijn
Publication type:
Article
A specific microRNA profile as predictive biomarker for systemic treatment in patients with metastatic colorectal cancer.
Published in:
Cancer Medicine, 2020, v. 9, n. 20, p. 7558, doi. 10.1002/cam4.3371
By:
- Poel, Dennis;
- Gootjes, Elske C.;
- Bakkerus, Lotte;
- Trypsteen, Wim;
- Dekker, Henk;
- Vliet, Hans J.;
- Grieken, Nicole C. T.;
- Verhoef, Cornelis;
- Buffart, Tineke E.;
- Verheul, Henk M. W.
Publication type:
Article
A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling.
Published in:
Biotechnology Journal, 2022, v. 17, n. 9, p. 1, doi. 10.1002/biot.202100660
By:
- de Bony, Eric;
- Gysens, Fien;
- Yigit, Nurten;
- Anckaert, Jasper;
- Everaert, Celine;
- Vanden Eynde, Eveline;
- Verniers, Kimberly;
- van Snippenberg, Willem;
- Trypsteen, Wim;
- Mestdagh, Pieter
Publication type:
Article
Short-Course Toll-Like Receptor 9 Agonist Treatment Impacts Innate Immunity and Plasma Viremia in Individuals With Human Immunodeficiency Virus Infection.
Published in:
Clinical Infectious Diseases, 2017, v. 64, n. 12, p. 1686, doi. 10.1093/cid/cix201
By:
- Vibholm, Line;
- Schleimann, Mariane H.;
- Højen, Jesper F.;
- Benfield, Thomas;
- Offersen, Rasmus;
- Rasmussen, Katrine;
- Olesen, Rikke;
- Dige, Anders;
- Agnholt, Jørgen;
- Grau, Judith;
- Buzon, Maria;
- Wittig, Burghardt;
- Lichterfeld, Mathias;
- Petersen, Andreas Munk;
- Xutao Deng;
- Abdel-Mohsen, Mohamed;
- Pillai, Satish K.;
- Rutsaert, Sofie;
- Trypsteen, Wim;
- De Spiegelaere, Ward
Publication type:
Article
On the whereabouts of SARS-CoV-2 in the human body: A systematic review.
Published in:
PLoS Pathogens, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.ppat.1009037
By:
- Trypsteen, Wim;
- Van Cleemput, Jolien;
- Snippenberg, Willem van;
- Gerlo, Sarah;
- Vandekerckhove, Linos
Publication type:
Article
Recurrent chromosomal imbalances provide selective advantage to human embryonic stem cells under enhanced replicative stress conditions.
Published in:
Genes, Chromosomes & Cancer, 2021, v. 60, n. 4, p. 272, doi. 10.1002/gcc.22931
By:
- Mus, Liselot M.;
- Van Haver, Stéphane;
- Popovic, Mina;
- Trypsteen, Wim;
- Lefever, Steve;
- Zeltner, Nadja;
- Ogando, Yudelca;
- Jacobs, Eva Z.;
- Denecker, Geertrui;
- Sanders, Ellen;
- Van Neste, Christophe;
- Vanhauwaert, Suzanne;
- Decaesteker, Bieke;
- Deforce, Dieter;
- Van Nieuwerburgh, Filip;
- Mestdagh, Pieter;
- Vandesompele, Jo;
- Menten, Björn;
- De Preter, Katleen;
- Studer, Lorenz
Publication type:
Article
Benchmarking digital PCR partition classification methods with empirical and simulated duplex data.
Published in:
Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae120
By:
- Chen, Yao;
- Spiegelaere, Ward De;
- Trypsteen, Wim;
- Gleerup, David;
- Vandesompele, Jo;
- Lievens, Antoon;
- Vynck, Matthijs;
- Thas, Olivier
Publication type:
Article
Digital PCR as a tool to measure HIV persistence.
Published in:
Retrovirology, 2018, v. 15, p. 1, doi. 10.1186/s12977-018-0399-0
By:
- Rutsaert, Sofie;
- Bosman, Kobus;
- Trypsteen, Wim;
- Nijhuis, Monique;
- Vandekerckhove, Linos
Publication type:
Article
Interferon-Mediated Long Non-Coding RNA Response in Macrophages in the Context of HIV.
Published in:
International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7741, doi. 10.3390/ijms21207741
By:
- Schynkel, Tinus;
- Szaniawski, Matthew A.;
- Spivak, Adam M.;
- Bosque, Alberto;
- Planelles, Vicente;
- Vandekerckhove, Linos;
- Trypsteen, Wim
Publication type:
Article
Corrigendum: Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay.
Published in:
Scientific Reports, 2017, p. 41112, doi. 10.1038/srep41112
By:
- Trypsteen, Wim;
- Mohammadi, Pejman;
- Van Hecke, Clarissa;
- Mestdagh, Pieter;
- Lefever, Steve;
- Saeys, Yvan;
- De Bleser, Pieter;
- Vandesompele, Jo;
- Ciuffi, Angela;
- Vandekerckhove, Linos;
- De Spiegelaere, Ward
Publication type:
Article
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay.
Published in:
Scientific Reports, 2016, p. 36111, doi. 10.1038/srep36111
By:
- Trypsteen, Wim;
- Mohammadi, Pejman;
- Van Hecke, Clarissa;
- Mestdagh, Pieter;
- Lefever, Steve;
- Saeys, Yvan;
- De Bleser, Pieter;
- Vandesompele, Jo;
- Ciuffi, Angela;
- Vandekerckhove, Linos;
- De Spiegelaere, Ward
Publication type:
Article
HIV-1 Vpr N-terminal tagging affects alternative splicing of the viral genome.
Published in:
Scientific Reports, 2016, p. 34573, doi. 10.1038/srep34573
By:
- Baeyens, Ann;
- Naessens, Evelien;
- Van Nuffel, Anouk;
- Weening, Karin E.;
- Reilly, Anne-Marie;
- Claeys, Eva;
- Trypsteen, Wim;
- Vandekerckhove, Linos;
- Eyckerman, Sven;
- Gevaert, Kris;
- Verhasselt, Bruno
Publication type:
Article
The impact of nevirapine- versus protease inhibitor-based regimens on virological markers of HIV-1 persistence during seemingly suppressive ART.
Published in:
Journal of the International AIDS Society, 2014, v. 17, p. n/a, doi. 10.7448/IAS.17.4.19823
By:
- Kiselinova, Maja;
- Anna, Maria;
- Malatinkova, Eva;
- Vervish, Karen;
- Beloukas, Apostolos;
- Messiaen, Peter;
- Bonczkowski, Pawel;
- Trypsteen, Wim;
- Callens, Steven;
- Verhofstede, Chris;
- De Spiegelaere, Ward;
- Vandekerckhove, Linos
Publication type:
Article
Accurate episomal HIV 2-LTR circles quantification using optimized DNA isolation and droplet digital PCR.
Published in:
Journal of the International AIDS Society, 2014, v. 17, p. n/a, doi. 10.7448/IAS.17.4.19674
By:
- Malatinkova, Eva;
- Kiselinova, Maja;
- Bonczkowski, Pawel;
- Trypsteen, Wim;
- Messiaen, Peter;
- Vermeire, Jolien;
- Verhasselt, Bruno;
- Vervisch, Karen;
- Vandekerckhove, Linos;
- De Spiegelaere, Ward
Publication type:
Article
Evolution of Experimental Design and Research Techniques in HIV-1 Reservoir Studies: A Systematic Review.
Published in:
AIDS Reviews, 2020, v. 22, n. 1, p. 16, doi. 10.24875/AIDSRev.M20000028
By:
- De-Scheerder, Marie-A.;
- Depelseneer, Bram;
- Vandekerckhove, Linos;
- Wim, Trypsteen
Publication type:
Article
Evaluating lncRNA Expression Patterns during HIV-1 Treatment Interruption.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 2, p. 1031, doi. 10.3390/ijms24021031
By:
- Schynkel, Tinus;
- van Snippenberg, Willem;
- Van Hecke, Clarissa;
- Vandekerckhove, Linos;
- Trypsteen, Wim
Publication type:
Article
Digital PCR Partition Classification.
Published in:
Clinical Chemistry, 2023, v. 69, n. 9, p. 976, doi. 10.1093/clinchem/hvad063
By:
- Vynck, Matthijs;
- Yao Chen;
- Gleerup, David;
- Vandesompele, Jo;
- Trypsteen, Wim;
- Lievens, Antoon;
- Thas, Olivier;
- De Spiegelaere, Ward
Publication type:
Article
Digital Polymerase Chain Reaction for Assessment of Mutant Mitochondrial Carry-over after Nuclear Transfer for In Vitro Fertilization.
Published in:
Clinical Chemistry, 2021, v. 67, n. 7, p. 968, doi. 10.1093/clinchem/hvab021
By:
- Tytgat, Olivier;
- Mao-Xing Tang;
- van Snippenberg, Willem;
- Boel, Annekatrien;
- Guggilla, Ramesh Reddy;
- Gansemans, Yannick;
- Van Herp, Michiel;
- Symoens, Sofie;
- Trypsteen, Wim;
- Deforce, Dieter;
- Heindryckx, Björn;
- Coucke, Paul;
- De Spiegelaere, Ward;
- Van Nieuwerburgh, Filip
Publication type:
Article

Found: 36