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- Title
Hybrid de novo genome assembly and comparative genomics of three different isolates of Gnomoniopsis castaneae.
- Authors
Turco, Silvia; Mazzaglia, Angelo; Drais, Mounira Inas; Bastianelli, Giorgia; Gonthier, Paolo; Vannini, Andrea; Morales-Rodríguez, Carmen
- Abstract
The first genome assemblies of Gnomoniopsis castaneae (syn. G. smithogilvyi), the causal agent of chestnut brown rot of kernels, shoot blight and cankers, are provided here. Specifically, the complete genome of the Italian ex-type MUT401 isolate was compared to the draft genome of a second Italian isolate (GN01) and to the ICMP 14040 isolate from New Zealand. The three genome sequences were obtained through a hybrid assembly using both short Illumina reads and long Nanopore reads, their coding sequences were annotated and compared with each other and with other Diaporthales. The information offered by the genome assembly of the three isolates represents the base of data for further application related to -omics strategies of the fungus and to develop markers for population studies at a local and global scale.
- Subjects
NEW Zealand; COMPARATIVE genomics; BROWN rot; CANKER (Plant disease); GENOMES; CHESTNUT
- Publication
Scientific Reports, 2023, Vol 13, Issue 1, p1
- ISSN
2045-2322
- Publication type
Article
- DOI
10.1038/s41598-023-30496-0