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Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 5, p. 2856
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- Publication type:
- Article
Genome-wide detection of a TFIID localization element from an initial human disease mutation.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 6, p. 2175, doi. 10.1093/nar/gkq1035
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- Publication type:
- Article
Bidirectional Promoters as Important Drivers for the Emergence of Species-Specific Transcripts.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0057323
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- Publication type:
- Article
Unique Alterations of an Ultraconserved Non-Coding Element in the 3'UTR of ZIC2 in Holoprosencephaly.
- Published in:
- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0039026
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- Publication type:
- Article
Differential Analysis of Ovarian and Endometrial Cancers Identifies a Methylator Phenotype.
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- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032941
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- Publication type:
- Article
Tissue-Specific and Ubiquitous Expression Patterns from Alternative Promoters of Human Genes.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012274
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- Publication type:
- Article
The Emergence of Pan-Cancer CIMP and Its Elusive Interpretation.
- Published in:
- Biomolecules (2218-273X), 2016, v. 6, n. 4, p. 45, doi. 10.3390/biom6040045
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- Publication type:
- Article
Evaluating Stacked Methylation Markers for Blood-Based Multicancer Detection.
- Published in:
- Cancers, 2023, v. 15, n. 19, p. 4826, doi. 10.3390/cancers15194826
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- Publication type:
- Article
Word-based characterization of promoters involved in human DNA repair pathways.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S1-S18
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- Publication type:
- Article
Cross-species mapping of bidirectional promoters enables prediction of unannotated 5′ UTRs and identification of species-specific transcripts.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-189
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- Publication type:
- Article
Diversity of core promoter elements comprising human bidirectional promoters.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S2-S3
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- Publication type:
- Article
Prediction-based approaches to characterize bidirectional promoters in the mammalian genome.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-S1-S2
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- Publication type:
- Article
Multi-species sequence comparison reveals dynamic evolution of the elastin gene that has involved purifying selection and lineage-specific insertions/deletions.
- Published in:
- BMC Genomics, 2004, v. 5, p. 31, doi. 10.1186/1471-2164-5-31
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- Publication type:
- Article
Orthology-driven mapping of bidirectional promoters in human and mouse genomes.
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- BMC Bioinformatics, 2014, v. 15, n. Suppl 17, p. 1, doi. 10.1186/1471-2105-15-S17-S1
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- Publication type:
- Article
WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S6
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- Publication type:
- Article
Comparative analyses of bidirectional promoters in vertebrates.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S6-S9
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- Publication type:
- Article
Characterization and clustering of kinase isoform expression in metastatic melanoma.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 5, p. 1, doi. 10.1371/journal.pcbi.1010065
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- Publication type:
- Article
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d466
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- Publication type:
- Article
MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3518, doi. 10.1093/nar/gkg579
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- Publication type:
- Article
Pan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotype.
- Published in:
- Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0007-7
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- Publication type:
- Article
Differential gene expression identifies a transcriptional regulatory network involving ER-alpha and PITX1 in invasive epithelial ovarian cancer.
- Published in:
- 2021
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- Publication type:
- journal article
Comprehensive Annotation of Bidirectional Promoters Identifies Co-Regulation among Breast and Ovarian Cancer Genes.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 4, p. e72, doi. 10.1371/journal.pcbi.0030072
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- Publication type:
- Article
Assessing ZNF154 methylation in patient plasma as a multicancer marker in liquid biopsies from colon, liver, ovarian and pancreatic cancer patients.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80345-7
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- Publication type:
- Article
A Case of IL-7R Deficiency Caused by a Novel synonymous Mutation and Implications for Mutation screening in sCID Diagnosis.
- Published in:
- Frontiers in Immunology, 2016, v. 7, p. 1, doi. 10.3389/fimmu.2016.00443
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- Publication type:
- Article
Leveraging locus-specific epigenetic heterogeneity to improve the performance of blood-based DNA methylation biomarkers.
- Published in:
- Clinical Epigenetics, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13148-020-00939-w
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- Publication type:
- Article
A Systems Biology Comparison of Ovarian Cancers Implicates Putative Somatic Driver Mutations through Protein-Protein Interaction Models.
- Published in:
- PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0163353
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- Publication type:
- Article
The hypothesis of ultraconserved enhancer dispensability overturned.
- Published in:
- Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1433-1
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- Publication type:
- Article
CAGI experiments: Modeling sequence variant impact on gene splicing using predictions from computational tools.
- Published in:
- Human Mutation, 2019, v. 40, n. 9, p. 1252, doi. 10.1002/humu.23782
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- Publication type:
- Article
PhenCode: connecting ENCODE data with mutations and phenotype.
- Published in:
- 2007
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- Publication type:
- Other
MethylToSNP: identifying SNPs in Illumina DNA methylation array data.
- Published in:
- Epigenetics & Chromatin, 2019, v. 12, n. 1, p. 1, doi. 10.1186/s13072-019-0321-6
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- Publication type:
- Article
The functional relevance of somatic synonymous mutations in melanoma and other cancers.
- Published in:
- Pigment Cell & Melanoma Research, 2015, v. 28, n. 6, p. 673, doi. 10.1111/pcmr.12413
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- Publication type:
- Article
Aberrant DNA methylation defines isoform usage in cancer, with functional implications.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007095
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- Publication type:
- Article
SigSeeker: a peak-calling ensemble approach for constructing epigenetic signatures.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2615, doi. 10.1093/bioinformatics/btx276
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- Publication type:
- Article
Examining epigenetic aging in the post-mortem brain in attention deficit hyperactivity disorder.
- Published in:
- Frontiers in Genetics, 2024, p. 1, doi. 10.3389/fgene.2024.1480761
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- Publication type:
- Article
Significant associations between driver gene mutations and DNA methylation alterations across many cancer types.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 11, p. 1, doi. 10.1371/journal.pcbi.1005840
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- Publication type:
- Article