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Integrating T cell receptor sequences and transcriptional profiles by clonotype neighbor graph analysis (CoNGA).
Published in:
Nature Biotechnology, 2022, v. 40, n. 1, p. 54, doi. 10.1038/s41587-021-00989-2
By:
- Schattgen, Stefan A.;
- Guion, Kate;
- Crawford, Jeremy Chase;
- Souquette, Aisha;
- Barrio, Alvaro Martinez;
- Stubbington, Michael J. T.;
- Thomas, Paul G.;
- Bradley, Philip
Publication type:
Article
Single-cell analysis at the threshold.
Published in:
Nature Biotechnology, 2016, v. 34, n. 11, p. 1111, doi. 10.1038/nbt.3721
By:
- Chen, Xi;
- Love, J Christopher;
- Navin, Nicholas E;
- Pachter, Lior;
- Stubbington, Michael J T;
- Svensson, Valentine;
- Sweedler, Jonathan V;
- Teichmann, Sarah A
Publication type:
Article
Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria.
Published in:
Science Immunology, 2017, v. 2, n. 9, p. 1, doi. 10.1126/sciimmunol.aal2192
By:
- Lönnberg, Tapio;
- Svensson, Valentine;
- James, Kylie R.;
- Fernandez-Ruiz, Daniel;
- Sebina, Ismail;
- Montandon, Ruddy;
- Soon, Megan S. F.;
- Fogg, Lily G.;
- Nair, Arya Sheela;
- Liligeto, Urijah N.;
- Stubbington, Michael J. T.;
- Lam-Ha Ly;
- Bagger, Frederik Otzen;
- Zwiessele, Max;
- Lawrence, Neil D.;
- Souza-Fonseca-Guimaraes, Fernando;
- Bunn, Patrick T.;
- Engwerda, Christian R.;
- Heath, William R.;
- Billker, Oliver
Publication type:
Article
Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1192-4
By:
- Braga, Felipe A. Vieira;
- Teichmann, Sarah A.;
- Stubbington, Michael J. T.
Publication type:
Article
An atlas of mouse CD4+ T cell transcriptomes.
Published in:
Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0045-x
By:
- Stubbington, Michael J. T.;
- Mahata, Bidesh;
- Svensson, Valentine;
- Deonarine, Andrew;
- Nissen, Jesper K.;
- Betz, Alexander G.;
- Teichmann, Sarah A.
Publication type:
Article
The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding.
Published in:
PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005251
By:
- Xie, Xin;
- Stubbington, Michael J. T.;
- Nissen, Jesper K.;
- Andersen, Kristian G.;
- Hebenstreit, Daniel;
- Teichmann, Sarah A.;
- Betz, Alexander G.
Publication type:
Article
The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding
Published in:
PLoS Genetics, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pgen.1005251
By:
- Xin Xie;
- Stubbington, Michael J. T.;
- Nissen, Jesper K.;
- Andersen, Kristian G.;
- Hebenstreit, Daniel;
- Teichmann, Sarah A.;
- Betz, Alexander G.
Publication type:
Article
The Human Cell Atlas: Technical approaches and challenges.
Published in:
Briefings in Functional Genomics, 2018, v. 17, n. 4, p. 283, doi. 10.1093/bfgp/elx029
By:
- Hon, Chung-Chau;
- Shin, Jay W;
- Carninci, Piero;
- Stubbington, Michael J T
Publication type:
Article
scHLAcount: allele-specific HLA expression from single-cell gene expression data.
Published in:
Bioinformatics, 2020, v. 36, n. 12, p. 3905, doi. 10.1093/bioinformatics/btaa264
By:
- Darby, Charlotte A;
- Stubbington, Michael J T;
- Marks, Patrick J;
- Barrio, Álvaro Martínez;
- Fiddes, Ian T
Publication type:
Article

Found: 9

Integrating T cell receptor sequences and transcriptional profiles by clonotype neighbor graph analysis (CoNGA).

Single-cell analysis at the threshold.

Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves T<sub>H</sub>1/T<sub>FH</sub> fate bifurcation in malaria.

Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments.

An atlas of mouse CD4<sup>+</sup> T cell transcriptomes.

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding.

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding

The Human Cell Atlas: Technical approaches and challenges.

scHLAcount: allele-specific HLA expression from single-cell gene expression data.