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Development of a comprehensive open access "molecules with androgenic activity resource (MAAR)" to facilitate risk assessment of chemicals.
- Published in:
- Experimental Biology & Medicine, 2024, p. 1, doi. 10.3389/ebm.2024.10279
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- Article
Long noncoding RNA LINC00844-mediated molecular network regulates expression of drug metabolizing enzymes and nuclear receptors in human liver cells.
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- Archives of Toxicology, 2020, v. 94, n. 5, p. 1637, doi. 10.1007/s00204-020-02706-5
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- Article
The landscape of hepatobiliary adverse reactions across 53 herbal and dietary supplements reveals immune-mediated injury as a common cause of hepatitis.
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- Archives of Toxicology, 2020, v. 94, n. 1, p. 273, doi. 10.1007/s00204-019-02621-4
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- Article
A testing strategy to predict risk for drug-induced liver injury in humans using high-content screen assays and the 'rule-of-two' model.
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- Archives of Toxicology, 2014, v. 88, n. 7, p. 1439, doi. 10.1007/s00204-014-1276-9
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- Article
The Estrogen Receptor Relative Binding Affinities of 188 Natural and Xenochemicals: Structural Diversity of Ligands.
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- Toxicological Sciences, 2000, v. 54, n. 1, p. 138, doi. 10.1093/toxsci/54.1.138
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- Article
Comprehensively identifying and characterizing the missing gene sequences in human reference genome with integrated analytic approaches.
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- Human Genetics, 2013, v. 132, n. 8, p. 899, doi. 10.1007/s00439-013-1300-9
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- Article
Five-Feature Model for Developing the Classifier for Synergistic vs. Antagonistic Drug Combinations Built by XGBoost.
- Published in:
- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00600
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- Article
Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences.
- Published in:
- 2018
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- Publication type:
- Editorial
Towards accurate and reliable resolution of structural variants for clinical diagnosis.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8
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- Publication type:
- Article
Author Correction: Towards accurate and reliable resolution of structural variants for clinical diagnosis.
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- 2022
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- Publication type:
- Correction Notice
Towards accurate and reliable resolution of structural variants for clinical diagnosis.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8
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- Publication type:
- Article
Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02579-6
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- Article
The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine.
- Published in:
- 2021
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- Publication type:
- Editorial
The emerging genomics and systems biology research lead to systems genomics studies.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S11-I1
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- Article
atBioNet- an integrated network analysis tool for genomics and biomarker discovery.
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- BMC Genomics, 2012, v. 13, n. 1, p. 325, doi. 10.1186/1471-2164-13-325
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- Article
Maximizing biomarker discovery by minimizing gene signatures.
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- BMC Genomics, 2011, v. 12, n. Suppl 5, p. 1, doi. 10.1186/1471-2164-12-S5-S6
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- Publication type:
- Article
Maximum predictive power of the microarraybased models for clinical outcomes is limited by correlation between endpoint and gene expression profile.
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- BMC Genomics, 2011, v. 12, n. Suppl 5, p. 1, doi. 10.1186/1471-2164-12-S5-S3
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- Publication type:
- Article
QA/QC issues to aid regulatory acceptance of microarray gene expression dataThis article is a US Government work and, as such, is in the public domain in the United States of America.This article is based on a presentation given at âImpact of Genomic Technologies on Regulatory Policies,â 37th Annual Meeting of the Environmental Mutagen Society, September 18, 2006, Vancouver, Canada.The views expressed in this article are those of the authors and not necessarily those of the U.S. Food and Drug Administration.
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- Environmental & Molecular Mutagenesis, 2007, v. 48, n. 5, p. 349, doi. 10.1002/em.20293
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- Article
Application of genome analysis strategies in the clinical testing for pediatric diseases.
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- Pediatric Investigation, 2018, v. 2, n. 2, p. 72, doi. 10.1002/ped4.12044
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- Article
Transcriptional Responses Reveal Similarities Between Preclinical Rat Liver Testing Systems.
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- Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00074
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- Publication type:
- Article
Evaluation of Bioinformatics Approaches for Next-Generation Sequencing Analysis of microRNAs with a Toxicogenomics Study Design.
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- Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00022
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- Publication type:
- Article
A comprehensive rat transcriptome built from large scale RNA-seq-based annotation.
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- Nucleic Acids Research, 2020, v. 48, n. 15, p. 8320, doi. 10.1093/nar/gkaa638
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- Publication type:
- Article
Toxicogenomics and Cell-Based Assays for Toxicology.
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- Interdisciplinary Bio Central, 2009, n. 1, p. 1, doi. 10.4051/ibc.2009.3.0010
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- Publication type:
- Article
The FDA's Experience with Emerging Genomics Technologies-Past, Present, and Future.
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- AAPS Journal, 2016, v. 18, n. 4, p. 814, doi. 10.1208/s12248-016-9917-y
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- Publication type:
- Article
Of text and gene - using text mining methods to uncover hidden knowledge in toxicogenomics.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0093-3
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- Publication type:
- Article
The role of the carboxylate ion in models of acyl-chymotrypsin.
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- Journal of Computational Chemistry, 1995, v. 16, n. 6, p. 705, doi. 10.1002/jcc.540160606
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- Article
Artificial redox enzymes. II. A computational chemistry study<sup>1</sup>.
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- Journal of Computational Chemistry, 1992, v. 13, n. 5, p. 614, doi. 10.1002/jcc.540130511
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- Publication type:
- Article
The Liver Toxicity Biomarker Study Phase I: Markers for the Effects of Tolcapone or Entacapone.
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- Toxicologic Pathology, 2012, v. 40, n. 6, p. 951, doi. 10.1177/0192623312444026
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- Publication type:
- Article
The Liver Toxicity Biomarker Study: Phase I Design and Preliminary Results.
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- Toxicologic Pathology, 2009, v. 37, n. 1, p. 8, doi. 10.1177/0192623308329287
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- Publication type:
- Article
Meta-analysis of microarray data using a pathway-based approach identifies a 37-gene expression signature for systemic lupus erythematosus in human peripheral blood mononuclear cells.
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- BMC Medicine, 2011, v. 9, n. 1, p. 65, doi. 10.1186/1741-7015-9-65
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- Article
DLI-IT: a deep learning approach to drug label identification through image and text embedding.
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- 2020
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- Publication type:
- journal article
RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system.
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- Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2023.1328613
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- Publication type:
- Article
Ultra-deep multi-oncopanel sequencing of benchmarking samples with a wide range of variant allele frequencies.
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- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01359-6
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- Publication type:
- Article
Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity.
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- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01276-8
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- Publication type:
- Article
Asymmetric author-topic model for knowledge discovering of big data in toxicogenomics.
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- Frontiers in Pharmacology, 2015, v. 6, p. 1, doi. 10.3389/fphar.2015.00081
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- Article
Sequencing XMET genes to promote genotype-guided risk assessment and precision medicine.
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- SCIENCE CHINA Life Sciences, 2019, v. 62, n. 7, p. 895, doi. 10.1007/s11427-018-9479-5
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- Publication type:
- Article
QuaPra: Efficient transcript assembly and quantification using quadratic programming with Apriori algorithm.
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- SCIENCE CHINA Life Sciences, 2019, v. 62, n. 7, p. 937, doi. 10.1007/s11427-018-9433-3
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- Publication type:
- Article
Significant variations in alternative splicing patterns and expression profiles between human-mouse orthologs in early embryos.
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- SCIENCE CHINA Life Sciences, 2017, v. 60, n. 2, p. 178, doi. 10.1007/s11427-015-0348-5
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- Publication type:
- Article
Erratum to: Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine.
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- 2013
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- Publication type:
- Correction notice
Critical role of bioinformatics in translating huge amounts of next-generation sequencing data into personalized medicine.
- Published in:
- SCIENCE CHINA Life Sciences, 2013, v. 56, n. 2, p. 110, doi. 10.1007/s11427-013-4439-7
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- Publication type:
- Article
An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era.
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- Genome Biology, 2014, v. 15, n. 12, p. 523, doi. 10.1186/s13059-014-0523-y
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- Publication type:
- Article
Comparing genetic variants detected in the 1000 genomes project with SNPs determined by the International HapMap Consortium.
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- Journal of Genetics, 2015, v. 94, n. 4, p. 731, doi. 10.1007/s12041-015-0588-8
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- Publication type:
- Article
Evaluating variations of genotype calling: a potential source of spurious associations in genome-wide association studies.
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- Journal of Genetics, 2010, v. 89, n. 1, p. 55, doi. 10.1007/s12041-010-0011-4
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- Publication type:
- Article
Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps).
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002310
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- Publication type:
- Article
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad690
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- Publication type:
- Article
Unraveling Gene Fusions for Drug Repositioning in High-Risk Neuroblastoma.
- Published in:
- Frontiers in Pharmacology, 2021, v. 11, p. N.PAG, doi. 10.3389/fphar.2021.608778
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- Publication type:
- Article
Identification of New SRF Binding Sites in Genes Modulated by SRF Over-Expression in Mouse Hearts.
- Published in:
- Gene Regulation & Systems Biology, 2011, n. 5, p. 41, doi. 10.4137/GRSB.S7457
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- Publication type:
- Article
Integrating Adverse Outcome Pathways (AOPs) and High Throughput In Vitro Assays for Better Risk Evaluations, a Study with DrugInduced Liver Injury (DILI).
- Published in:
- Altex, 2020, v. 37, n. 2, p. 187, doi. 10.14573/altex.1908151
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- Publication type:
- Article
In Vitro to In Vivo Extrapolation for Drug-Induced Liver Injury Using a Pair Ranking Method.
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- Altex, 2017, v. 34, n. 3, p. 399, doi. 10.14573/altex.1610201
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- Publication type:
- Article
Perspectives on Validation of High-Throughput Assays Supporting 21<sup>st</sup> Century Toxicity Testing.
- Published in:
- Altex, 2013, v. 30, n. 1, p. 51, doi. 10.14573/altex.2013.1.051
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- Publication type:
- Article